Array 1 37756-39290 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWI01000013.1 Campylobacter sp. RM13119 contig00013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37756 30 100.0 37 .............................. AAAAATAAAAAGAGAGGATTAAGAAGCAAGGAGGGGG 37823 30 100.0 35 .............................. TTTTCAACAATCTAATGTTGTTTTGGGGCAGAAAG 37888 30 100.0 35 .............................. AACACAATAGTCGGAACAGAGTTATAGGTATCTTT 37953 30 100.0 36 .............................. CTGAAAATCAGGTTCAAACAGATAGTATTCGTAAAA 38019 30 100.0 37 .............................. ATGCTTTATATTCAAAAGCAAGAGCAAGCTCTTCATT 38086 30 100.0 36 .............................. TATAAAAAATCATCGACGGGATAAGTATCGGAGGGA 38152 30 100.0 35 .............................. TTTCACCGTTGGTATAAACGGAGATCTTGGCGAGT 38217 30 100.0 35 .............................. ATCCCTCTGATTTTCAGGGATTAAGTCTTGTCGAT 38282 30 100.0 35 .............................. GTTGGTTTTACTGCTTTTATTCTTACCTACCGTCC 38347 30 100.0 36 .............................. AACATCGAAGAGCAAACACAGAAGATAAATCACGTG 38413 30 100.0 34 .............................. TAGGGCTTGATAGAAGGGGCAGTAATGAGCTAGC 38477 30 100.0 37 .............................. CCATCACTACTACCACAGAGCTCACAAGGCTCGTGCC 38544 30 100.0 34 .............................. TAGCTAAAAAAGCAACCTATATAAAGCAAGTAAG 38608 30 100.0 35 .............................. GGTGTAGGGGCAGACCCATTAAAGGGAAATACTAT 38673 30 100.0 35 .............................. CTCAAGATACGAGAACGAACTAAGATATACAGGGG 38738 30 100.0 36 .............................. AAACGTTTAAACAAAGAAATTATATAAAAAACAAAA 38804 30 100.0 35 .............................. AATGATTATGAAGAACGCGCGCAACCTTACTATTC 38869 30 100.0 36 .............................. GTAGGTTCAGACTATGAGTGCATAGACTTTGATAAG 38935 30 100.0 36 .............................. CTAGAGAAGAAGAGAAACTAGACAAAGTCAAAGAGA 39001 30 100.0 36 .............................. TACCAACGGTGAAATAAGAAGCTATGCCATAAGCAA 39067 30 100.0 34 .............................. GATTGTTGAAAATAATCACTTTCAGACCGTTTAC 39131 30 100.0 34 .............................. CGTCTAAATTCACCCCGCAAGATAAAGAGATAAT 39195 30 100.0 36 .............................. TCATAAGGAAAATACTCGCCAAGATCTCCGTTTATA 39261 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 100.0 35 GTTAAAATTTAAGCCGTTGGCTTTTGAAAC # Left flank : TGAGATTTATAAGACCGAGCTAGATCCAAGGATCGGCTTTTTACACGAGCCAAACTACCGTGCGCTTAGCTTGCATCTTGATATTGCTGAGATTTTTAAGCCGATTTTGGGCGATACGCTGATCTTTACAATGCTAAATCGTCGTGAGATCACGGCAAAGGACTTTGAGACGAACGCCGGACGGATCAAATTTAGCAACGAAGCCGTGCAAAAGATCGAGATAAAGATAATCGGCAAACTCACCGAGCAAGTAGAAGTAGCGGGGCAAAAGCTCACGTGGAGGCAGGTGATCCGCCGCGAAGCTAATAGGCTTAAAAAGTGTATTTGTGAGGACGCGCCTTATGAGGGGTTTGTATGGAGATAAAGCTTGTTTTAAGCTTTATGATGACCCGATATTTTGGGCACTTGGCTGTTTGATGTGAGTAAAATTTAGCCTTTTATAAGGTAAATAGATATAGACTTTATCTTGCAAACAGCCCTAAAATGTGTGTTTTGGTGCT # Right flank : TGTATTTTTTCTATTTTTTGTGGAATATTCCTTATGTTAAAATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTAAGCCGTTGGCTTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 78124-76327 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWI01000010.1 Campylobacter sp. RM13119 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 78123 30 100.0 34 .............................. GGTAGAAGTATATACGTCCAGCTTCATCCACCCA 78059 30 100.0 35 .............................. TGAAGATATAACAGAATCACCACCACGAGGATTAT 77994 30 100.0 37 .............................. AGGTCGGTATGCTTGCAAATGTTCTTGGCGTTTCAAC 77927 30 100.0 37 .............................. TTCTGATTTGCCGTATTCTCCGATGACGCATGATAAT 77860 30 100.0 35 .............................. ATTCTAAAGCCATATTGGATTTTAAAGATAATTCA 77795 30 100.0 36 .............................. ATCAATTTGATTTTTAAAAACGATATTTTAGCTCGC 77729 30 100.0 35 .............................. AACGGACGAACCGCTGTTAAAACGCCTAATTTTAG 77664 30 100.0 34 .............................. TGAGGCTAGAAGAGATCACGTCAGAGCTAAAAGC 77600 30 100.0 34 .............................. CCCTAAGCTTTTGCCGTCTATGCTTTGAGGCACT 77536 30 100.0 33 .............................. TCTCTTTTTCGTGGTTGCCTGGTAAATACGCTG 77473 30 100.0 36 .............................. CCCTCTAGTAGCCACTCTATGCAAGCGTTCGCGATA 77407 30 100.0 36 .............................. CCCTCTAGTAGCCACTCTATGCAAGCGTTCGCGATA 77341 30 100.0 37 .............................. AACAAAAAGCTAGATTCAAACGAAAATGCAGCAAGTG 77274 30 100.0 34 .............................. CTTCTAAACAGCCTTGCATGTATATCTGCTTGAG 77210 30 100.0 34 .............................. GGTAGAAGTATATACGTCCAGCTTCATCCACCCA 77146 30 100.0 34 .............................. CAGGATTAATGCTACTACTTGATGACTTATTTAC 77082 30 100.0 37 .............................. ATAAGCCTTTCATAGCTTATATTTTCGATTAGGGCTT 77015 30 100.0 34 .............................. AAGAGGGATGAGAAATGAGTATAAAGGTAATGAG 76951 30 100.0 35 .............................. GAATGATCAGAAATAATATAATTACCACCTGTTGG 76886 30 100.0 35 .............................. ATATAATCTTAGCATTATCTTCCGGTGTATATACT 76821 30 100.0 36 .............................. GCTAATTCTAAGCTATCATTTGATAACATTTCTCTG 76755 30 100.0 36 .............................. CCGTTTTCCTTTAAATAGTTATCATACTTTTGAATA 76689 30 100.0 36 .............................. TCTATCAAGGCAAGGAGTATAAGGTAATGGATTGGG 76623 30 100.0 35 .............................. CTTCAACTCTTGAAGCCAAATCGGTTGCTAGTGTT 76558 30 100.0 37 .............................. AAAATAGAGGCTTTAAATAAAAATGGGATACGATCGG 76491 30 100.0 38 .............................. TCTCTCTACCTTGTGCTTTAATATAGTAAGGCTTGCCA 76423 30 96.7 37 .............................T TGCAATGGTGGGCGGATTGGTTGGATAGCCTACTAGG 76356 30 86.7 0 ...............A....T.......TT | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 99.4 35 GTTAAAATTTAAGCCGTTGGCTTTTGAAAC # Left flank : GA # Right flank : GAAATGAATGAAGGCAGGTAAGGCTGGAATTTATTTTAAACGTAAAGGAGAAAGAAAATGCAAGATGTAAAACAACTCAAAGTTATGCTTGATAGATACGAAGCCTTAATTTGCCTTATTGTGTAAGATGAGTATAAAAAAGTTATTAATAGTTAGTTGTGCCCGCTCTTTTGTATCTTAATAAAGTTGCATGACTGTTATGGTGGCTAGTGGGTGATAAATGTGGCATAAAGACAAAGAATGACAAATAAATCCCGGAGAGCTTTAGCTAAAACATGAGCTGCACACAAAAACGCATGACAGTTGAGACAATTACTTAAATGCTTATCTTTTAAGTTATGGTAATTTAACCAAAATGTTAGCTAAATATATAAAATGGTGTGTTTTTTGTTGCAAGGAAGTAATTATAGTATTATGCTGTTTGTTGTATTGAAGTAAGTGGCCGGGAGATAGGAACATCGAAACACTATAAAATCGGTATTCCAAGCCATTTTGAACTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTAAGCCGTTGGCTTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //