Array 1 65597-63798 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJXY01000003.1 Escherichia coli strain MOD1-EC1985 MOD1-EC1985_3_length_304052_cov_79.3292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65596 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 65535 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 65474 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 65413 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 65352 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 65291 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 65230 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 65169 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 65108 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 65047 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 64986 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 64924 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 64863 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 64802 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 64741 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 64680 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 64619 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 64558 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64497 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 64436 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 64375 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 64314 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 64253 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 64192 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 64131 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 64070 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 64009 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 63948 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 63887 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63826 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91571-91298 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJXY01000003.1 Escherichia coli strain MOD1-EC1985 MOD1-EC1985_3_length_304052_cov_79.3292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91570 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 91509 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 91448 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 91387 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 91326 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //