Array 1 77025-82130 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSLD01000001.1 Bifidobacterium pseudocatenulatum strain AM26-14LB AM26-14LB.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================= ================== 77025 33 100.0 34 ................................. ATTGAGCACGCGGAATGTGTCGCGGCTGACGTAA 77092 33 100.0 33 ................................. GCTGAGTGAATTATTTGACACTATAATGTCACG 77158 33 100.0 33 ................................. CCATTAAGCGGCATGATGCACCCGACACGCCGT 77224 33 100.0 33 ................................. ATCATCGTATTACGTCAGGTGTGACCAACATAA 77290 33 100.0 33 ................................. AGTGATTTTAATGATTTGATGACTAAGAATAAT 77356 33 100.0 34 ................................. ACGTTAACGCTGTTACCAAGTCGCAGCATGTTTG 77423 33 100.0 36 ................................. AAAAAGGAAAACCTTTACTGGGGTAGCACCGTACAG 77492 33 100.0 33 ................................. AAGAAATCGCAGTCAAGTGGATTAAGGCGCACG 77558 33 100.0 33 ................................. TATAAGCCGTATCAGTTCCTCACGCAAGACGGA 77624 33 100.0 35 ................................. TAGATAACGTTCGTCGATATACGGCGGGAGGTTAA 77692 33 100.0 35 ................................. GCTTACGTATTGATGTATGGTGCCGTCTGCGCCGA 77760 33 100.0 35 ................................. CGTACTCGCGTTGGGTTTTTCAATGCTACCGCCTT 77828 33 100.0 37 ................................. GCCAATGTAGTGCGCCCAAATGTACCCGTCTGCGATG 77898 33 100.0 33 ................................. GAAAGTGGCGTAACGGTATGGACTGACCCCGAC 77964 33 100.0 35 ................................. GTTTTACGGCGTGTCGTTGTTTTGTTTGTACTATA 78032 33 100.0 34 ................................. TACGCCACCGAAGCGGTGTCCGAGTACGGACTTG 78099 33 100.0 34 ................................. CGCACGCGCGTGTATGCCGTGCTCAAGGGCATGG 78166 33 100.0 35 ................................. AGTGAATTTTACAATACTGTTGACCGTTGGCAGGA 78234 33 100.0 33 ................................. GATGCGGTTGAGGTGCGTTTCGAGCGTAGTGTC 78300 33 100.0 34 ................................. AGCGTTTGATCGGCTTGTACGTCCAGCATGCCGA 78367 33 100.0 36 ................................. TAAACTATGACACCGGACTACCGAAGGCGCGTGAGG 78436 33 100.0 34 ................................. AAACTGCAAAACGGCCTTATCGTCGCGGACGGGC 78503 33 100.0 34 ................................. GCAAAAAGTCTCGATGAATGAGGAAACTTTTTAC 78570 33 100.0 33 ................................. TACAGAACCACCGCGAACAATTTTTCCGAAAAA 78636 33 100.0 34 ................................. GCCGATGATCAACCCAAAGTCGGCCTTGACCTGT 78703 33 100.0 34 ................................. TTTTTCTGCTGGGACGAAATGCTGGAAACCACCA 78770 33 100.0 34 ................................. ACGTACTGGAAACTGCACGAACTCTATGTACGCA 78837 33 100.0 34 ................................. GTGAGCACGGTGCATTTGCCGGTATCAAGTCCTT 78904 33 100.0 34 ................................. ATATACTGATTGATACGTAAGCTTTGCCGCATTT 78971 33 100.0 36 ................................. ACCCCACTGTACAGGCTTACGGCGGCAGTACGCAAT 79040 33 100.0 35 ................................. ACCTATTGGCAGACCACCGACATATGGACGATATG 79108 33 100.0 34 ................................. GATGGCTCCCGTCTTCCAGCCGCCGAGCCAAGAG 79175 33 100.0 32 ................................. TTCTTCTGCTGGGACGAAATGCTCGAAACCTC 79240 33 100.0 35 ................................. TCGCACCTATTATTATTTGAGGAGGACTTTATGAG 79308 33 100.0 35 ................................. GCGCATTTTGTTGAGCACTTGCAAGCGCCGTCCGA 79376 33 100.0 34 ................................. ACCGCCGTGTGCTTGCCGGTGTATTCGCCATGCT 79443 33 100.0 34 ................................. ACCTTCGGGGTGGAGATTGAAATGGAATCCGAAA 79510 33 100.0 34 ................................. GTGCGATTAGGTGGGTGTAGTCGGAGATGATTAC 79577 33 100.0 35 ................................. TTCCGGACATGTCGAGCTGCGCACGTACAATTCAT 79645 33 100.0 33 ................................. CAAAAAGGGAAAATTTTTTAGCTTTACCGTCCG 79711 33 100.0 33 ................................. TGTCCGGCGATGGCACCGATCCGAATCTCAATG 79777 33 100.0 32 ................................. CACACGCATACTGCCAAGCATGGAGACAGCGT 79842 33 100.0 34 ................................. CGCGCCATCAACACGGAATACTCGCCGAGCACCA 79909 33 100.0 35 ................................. ACCCAGCCGGGCGCAGTGCATCGCGGCGAGGTCGA 79977 33 100.0 32 ................................. ATTGCGGCGAACGTTCTGCACGCTCTCCCGTG 80042 33 100.0 35 ................................. GCCGTACGGTCGAGGCCAATGTCAGGGCTTCGCGT 80110 33 100.0 34 ................................. AAGCGGGATTTCTGTGATCTCACCGAGGAACGGG 80177 33 100.0 81 ................................. GCCTCCAGGTCCTGGAAGCCAGAGACGCGCAAGAGCGTGGATTGAAATGACGCGGGCTGGGCCACCAAGGCCGACATCGAC 80291 33 100.0 33 ................................. GTATGCTGCGGGTCCTCGGCCTTCAACGCGCCG 80357 33 97.0 34 ...............T................. GGCTTTGCGTGCGGCAGCTGCGCGGTGTGCCGCG 80424 33 100.0 32 ................................. TCACCAATAATCATCAACCATGTGGCGCATGT 80489 33 100.0 33 ................................. CATTATGCGCGATATACCCTCTATCGGTGCGGA 80555 33 100.0 33 ................................. ATCGAGGTGTGCCGTGAGCTCTCGCATGCCGCT 80621 33 100.0 37 ................................. ACGGTCTGGCCGTTGGTATTGATGCTGGACGTGAAGG 80691 33 100.0 36 ................................. TTAAACACCCTCAACCGCTCTCCATCCCACCAACTG 80760 33 100.0 34 ................................. TGGATTGTAGCGTTTGAGCTTGCTGATTGCCTGA 80827 33 100.0 32 ................................. ATGCGCCACACCTTGTGGTACATCATGCGTTG 80892 33 100.0 34 ................................. CGCATCTACCATGCTGCCGGCGGCGAGGCGATAT 80959 33 100.0 34 ................................. CCGCCCTACTGGAGCTTATTGAGCGTATCCCCGA 81026 33 100.0 34 ................................. ACCGTGTACAAGCTCGCCAACTATAACGACGTCG 81093 33 100.0 35 ................................. GGCATCAGCGTGGTCAACAGCATGGGCCGTCTGGC 81161 33 100.0 34 ................................. CGTGAGGTGGGCGATGAGGGACTCGAACCCTTTG 81228 33 100.0 34 ................................. TGTCTGCCACGAAACCGGATTCGGCATACACGTT 81295 33 100.0 33 ................................. TTCGAGACAATAGTGAGGGGTATCAGCGCTCAA 81361 33 100.0 36 ................................. CGCACAAGAGTGTACGCCGTGCTCAAGGGCATGGAG 81430 33 100.0 33 ................................. GCGCAATCTCCAGCACGCACGTCTCATACTTGC 81496 33 100.0 35 ................................. CAGCTTCAGCAGTCGAGCCTGAGCCAAGTCACGCT 81564 33 100.0 36 ................................. TGCGCTGCGGTCAGACTGCGGAACTGCTTGAGTCGT 81633 33 100.0 32 ................................. GTGCTTGACCTCGACCCATTGCAGCAGCTCGA 81698 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 81766 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 81833 33 97.0 33 .............................G... AAGGCCGCGTCCGTGCAGGTGCAGGCAGCTCAG 81899 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 81965 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 82031 33 100.0 34 ................................. GATACGATTAAGATGATTTTCGAGCGTCGTATCA 82098 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================================================================= ================== 76 33 99.9 35 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATAATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAACGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //