Array 1 34218-31808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATB01000014.1 Streptococcus uberis 6736 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34217 36 100.0 30 .................................... TGTTAGACAAAGATTGAAAATAGCTGAGAA 34151 36 100.0 30 .................................... AAAGAGCGCTAAAGTGCATGTATTTTTACT 34085 36 100.0 30 .................................... ATTTCTTTTCTAATGGCTTTTAAGGGTAAG 34019 36 100.0 30 .................................... ACATTACGGCTATCATATTGTCGTTTCTGT 33953 36 100.0 30 .................................... AGCCTTTACAGTTCAAATAAATATTTTGAT 33887 36 100.0 30 .................................... CCTTTAAACTCAACTCCGCCAAGTGATCCT 33821 36 100.0 30 .................................... GAAGTGAATGGGGATTCACAAGACAGAGCA 33755 36 100.0 30 .................................... TTATCAAGTGAAGCAGATACACCAGCACTT 33689 36 100.0 30 .................................... TCTGTGAATACTCCATCATCTAAATTGACT 33623 36 97.2 30 .......................C............ AGCATCAGGTTTTGGATCATCCTTTGTCAG 33557 36 100.0 30 .................................... GACAATGAATCAAGTGAATCTGATAATGTA 33491 36 100.0 30 .................................... TGAAATTTCAAAATATATGATTACTGGGTT 33425 36 100.0 30 .................................... TTTACGGTGAAAGCGCAACTTTCCCGCACT 33359 36 100.0 30 .................................... TTTAAAAGGTGCTTGTAGCTTTGCCACAAT 33293 36 100.0 30 .................................... TGTAACTCTAGAAACTCATCAGCAGTAAGC 33227 36 100.0 30 .................................... TCATCAGGACTAAGTAATACAATGTCATAC 33161 36 100.0 30 .................................... GCTTCATTTTCTACCTCATTTAAATCTCTT 33095 36 100.0 30 .................................... CGTTTTTAACGCTACGTTCTTTGGAAAACC 33029 36 100.0 30 .................................... GCATTCAGCTTACTATTGACATCATTTAGA 32963 36 100.0 30 .................................... TATTTCATTGCTTATGGCCAGACACGGCTT 32897 36 100.0 30 .................................... ATAAAGATGAAAAACTAGTCAAAATAGTTA 32831 36 100.0 30 .................................... TAACAACAAATCAAACTATTACTGATTTAA 32765 36 100.0 29 .................................... ATAGACTGAAAGAAAAGTTCGAAGCTCAG 32700 36 100.0 30 .................................... ATAAAGATAATTTAGCTCAATTCTTGACCT 32634 36 100.0 30 .................................... TGGAATTAAAATGGGAAAAAGTGCTTTGTC 32568 36 100.0 30 .................................... TTACTAGCTAAGAAGTTCCTAACGCCTAAA 32502 36 100.0 30 .................................... TTTCAGGCCATACATCAGCAATCTCTCAAA 32436 36 100.0 30 .................................... AAATCTCTATGTTGTTGACTTGCGTTCTGA 32370 36 100.0 30 .................................... AACTGCTTTCCAGCCATGGCAAATACACCA 32304 36 100.0 30 .................................... TAGTCATCGTCCCACTCACCTACCCTAATT 32238 36 100.0 30 .................................... CCTTCAATTGCTAAATCATTGATATAAAGT 32172 36 100.0 30 .................................... CCTTCAATTGCTAAATCATTGATATAAAGT 32106 36 100.0 30 .................................... GACAATGAATCAAGTGAATCTGATAATGTA 32040 36 100.0 30 .................................... TGCTTATAGTCAATATGTGCGTAATCATCT 31974 36 100.0 30 .................................... TTTTGACCATTTCCTTGCAGTTAGCAGCAT 31908 36 100.0 30 .................................... AAGATACCTTTGATAAAATTACTCGTTCGT 31842 35 91.7 0 ....................-.............TT | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : AGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAATCTATTGTTTAAAATGTATAATTATTAATAAAATAGCCTTAAAAATGTATATCGAGAAATACGTTTTCAGGTTTTTTCTTGTTTTTTTGATGCTTTTAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGCCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //