Array 1 208814-207886 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVW01000003.1 Pasteurella multocida strain HNA17 Contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 208813 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 208753 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 208693 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 208633 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 208573 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 208513 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 208453 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 208393 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 208333 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 208273 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208213 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208153 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208093 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208033 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 207973 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 207913 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 92608-91380 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVW01000005.1 Pasteurella multocida strain HNA17 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92607 28 100.0 33 ............................ CTGTATTGATGAAACTTGCCTATGGATTTGGTT 92546 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 92486 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 92426 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 92366 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 92306 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 92246 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 92186 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 92126 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 92066 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 92006 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 91946 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 91886 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 91826 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 91766 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91706 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91646 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91586 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91526 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91466 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91406 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //