Array 1 227294-228419 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBS01000004.1 Salmonella enterica subsp. enterica serovar Oslo strain 02-0012 NODE_4_length_258652_cov_1.98574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227294 29 100.0 32 ............................. CGCCATCATCGCGCAGCACTGGCTGGTGGATA 227355 29 100.0 32 ............................. TACGTTGACGCTGGCAAACGGCTCGATTTCGT 227416 29 100.0 32 ............................. CTGTTAACTCAGCGATGGGGAGTGTCGGTGGC 227477 29 100.0 32 ............................. CCTGGCGGCACACTCTACCGCCCGTGGTGGCA 227538 29 100.0 32 ............................. GCGGAAGGATTCGTCCATCTCACCGCGATCAA 227599 29 100.0 32 ............................. CGTGTTTTCATTCCCCGCCTCGCCTATTTTAT 227660 29 100.0 32 ............................. CCCCGTTAAGGGGCTTTTTTATGCCCGCCGTC 227721 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 227782 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 227843 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 227904 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 227965 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 228026 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 228087 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 228148 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 228209 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 228270 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 228331 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 228392 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 244677-247393 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBS01000004.1 Salmonella enterica subsp. enterica serovar Oslo strain 02-0012 NODE_4_length_258652_cov_1.98574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 244677 29 100.0 32 ............................. CAGCGCACTACCCGGCAATAAATCTCCGAATA 244738 29 100.0 32 ............................. GCGGTATTCACGGATGTATCAGCGAGCAGATC 244799 29 100.0 32 ............................. GCCCGCCAATTTGGCAGCGCGATGACGCAAAT 244860 29 100.0 32 ............................. CTGATATCGCCTCGTTAATTTCTTTTACAGCT 244921 29 96.6 32 ............................A TCCAGTCGGCGATGTTAAACAGTGACGCGACC 244982 29 100.0 32 ............................. GTTGCCGGGATATGGCGGAGAATTATATATCG 245043 29 100.0 32 ............................. CAGAAAGCGGTCATCACCTCCGTAATTGGTGT 245104 29 100.0 32 ............................. AAATCGACCGAAAATTCGGACAGTACAACGTC 245165 29 96.6 32 .................C........... TCCAGTGTTTATTTTAGACTCGCAACAATTAA 245226 29 100.0 32 ............................. GCGATTCCGTTGTCGGCCAGCTTCAGGCGGTT 245287 29 100.0 32 ............................. CTCCAGGCGGCCCCGACATATAGCGCTCATGC 245348 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 245409 29 100.0 32 ............................. GCCTTAGAAGATGACGACCTGATTTCAATTGA 245470 29 100.0 32 ............................. TAAATTTTCAAAACCAGCTTGTGATGGTTATA 245531 29 100.0 32 ............................. GGGATTTTGGATCGCCCGGTGATAGAGAATTA 245592 29 100.0 32 ............................. CGGTTCCATTGACCCGCGCTGCGGGCTGTCCT 245653 29 100.0 32 ............................. CACGTTTCCTGCCTAATAAATGGATGATGTCG 245714 29 100.0 32 ............................. GACAGTGCCCTGCTGTTGGGCGGTGTCAGCAC 245775 29 100.0 32 ............................. CGTGGAACTTTATCCGCACAGATTTCCTGCGC 245836 29 100.0 32 ............................. GACGCAGGGGTTACTGATGAACTGAAAAAGCA 245897 29 100.0 32 ............................. CAGCGGGAGGAAATTAACAGCCTGAAATCAGG 245958 29 100.0 32 ............................. GGAAACGCATATGAGCACACAAACAACCGGCA 246019 29 100.0 32 ............................. TACCGTTAACCAGCTCAATAAAAACCAGGTGA 246080 29 100.0 33 ............................. GTTGCCAGCGCAATTCCGTGAACACCCACAATT 246142 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTACGTGAAAC 246203 29 96.6 32 C............................ TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 246264 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 246325 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 246386 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 246447 29 96.6 32 ............................C GGATGAAAGAAGGGCAGGAAAAAATCTACTAC 246508 29 100.0 32 ............................. CAAACGCCAACGCAACCACAACCCGCCATTAC 246569 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 246630 29 100.0 32 ............................. CAATTGACGAGCCTTCCATATAGGACGCCCGC 246691 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 246752 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 246813 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 246874 29 96.6 32 .................T........... TCATTCAGCGAACGCAGGAGAACCAGCCGCCG 246935 29 100.0 32 ............................. TTCGGGAATTTATTCAGCCAGACGACAGCCGA 246996 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 247058 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 247119 29 100.0 33 ............................. ACCGCTTTGTCGAACTCTCCGAACTGCGCCAGC 247181 29 100.0 32 ............................. CAAACTGTGATTATGTGCTGACTCAATCTTTT 247242 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 247303 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 247364 29 100.0 0 ............................. | A [247391] ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //