Array 1 1993-6949 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNOE01000711.1 Xanthomonas oryzae pv. oryzae strain PX0124 scaffold710, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1993 31 100.0 34 ............................... CAACCTTGCGCCCCCTGCTGGTGCAACAATCCTG 2058 31 100.0 34 ............................... TTGGCGGAATCGGTGGCGGTGCAGGCAGTGCTAC 2123 31 100.0 34 ............................... CCACCAACGCTAGGGCAAGTCGCCCTGCTTGAGG 2188 31 100.0 34 ............................... GCAGTTATGTTGCCCTCAGCCTGGGTCACTCTGG 2253 31 100.0 33 ............................... TGCAAGAGGAGCTAGAGCAAGCAGGTGCACCAC 2317 31 100.0 37 ............................... AACAAGATCACTGAGAGGAGTTCCGCGAAATGAGCGA 2385 31 100.0 35 ............................... GCAGTCTGTATTGCCGCCTGTCTGTCAAGCTGCTC 2451 31 100.0 34 ............................... TCATTGTCAAAGAACAGATCAACATCTCCTTGGT 2516 31 100.0 36 ............................... TTCTAGACAATTTTCACGGGCACAGGAGCGCTCACC 2583 31 100.0 33 ............................... TCTTGCTCTTGCCCATGTTCTGGTTGTTCTGGG 2647 31 100.0 36 ............................... TTGTGCTTCCTTGATCTTCTCATAGCGATTGGTATT 2714 31 100.0 36 ............................... ACATAGTTCCAAAATTCAGCCGATTCAGGCACAACA 2781 31 100.0 37 ............................... ATCACATTGTTCAGATCAAGGCTACCTGGCTCTGGCC 2849 31 100.0 34 ............................... TTCTTAATCCGGTAGTCGGAGGTGGAGAACGAGA 2914 31 100.0 34 ............................... GCAAAGTAATGACTGATGGCCGAATTGAGAGCCT 2979 31 100.0 35 ............................... CTGATCACAGGTGCAAACCGGTTTGGTTATGACAA 3045 31 100.0 35 ............................... TACGGGAGAGCTAGTCCCAATGATGCTCATTGGAG 3111 31 100.0 35 ............................... TGCCTGAGCCTTGTTTGGTTTTGTACCCAGTGGCT 3177 31 100.0 35 ............................... AGAAAATAGTTTGAAAAGGGGCTTGACAGCCGTCA 3243 31 100.0 34 ............................... GTCATCCTCATACAACTCAGCCTGCAAGTGCCTC 3308 31 100.0 34 ............................... ACCACACTGCCTCATCAATACAAGATCCCCGTCG 3373 31 100.0 34 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGC 3438 31 100.0 35 ............................... AAACACACCAAGATTTTGTGCACCCTGGAACCAAC 3504 31 100.0 35 ............................... ACCATGAACAACCAAGTATTCGCCAACGCCACCCA 3570 31 100.0 33 ............................... CCATTTACAGACAGGCCTGGGGGCGAGGTTGCA 3634 31 100.0 35 ............................... ATAATCAGAATAGCCCCGGCGTTATAAATGGTGTG 3700 31 100.0 34 ............................... CCGATCTTAAACCCGCCAATATAGTTGTTGGCAT 3765 31 100.0 33 ............................... GGGATCGATTTGCCGGGCCTGCTCTTGCTGCGC 3829 31 100.0 34 ............................... GGCCTCTAGTATCTTCTGTCCCCGGGCGGTGCTG 3894 31 100.0 34 ............................... TGCGCCGCGTGTTTAACAAAATTACTGAGAGGAG 3959 31 100.0 36 ............................... ATACAACCGCCGATTTGCTACGCTGGCTCGGCGGTC 4026 31 100.0 34 ............................... TACAAGTACGCGCCTGCGCGCGCAGCGGCGCCGG 4091 31 100.0 35 ............................... TGTAGCGCGGCGTTCTCTGCGTCGGTCGCTGCTGC 4157 31 100.0 35 ............................... CAGGCCTCTGCCGGGCGTTGGAATGACCGTTCGGC 4223 31 100.0 34 ............................... ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGT 4288 31 100.0 35 ............................... TTGCACCAGCGCGTACACGCTGTATTCGCTACCCG 4354 31 100.0 36 ............................... CGCTTCTCCGGATCAATAGGTCTGGCGGAGTAGAAA 4421 31 100.0 35 ............................... AGGAAACGGTCGCCATTCGGCAGGCTGCGGCGCAG 4487 31 100.0 34 ............................... AGGCCACGGATCAGGCGGTTATTCATGTACGAGG 4552 31 100.0 35 ............................... TTCAGCGCTGCGGACTCCATCACCAAGATGTGGTC 4618 31 100.0 34 ............................... ACAGTGGCTGTTAGCTCCAGGACTGTGCTTGCAG 4683 31 100.0 36 ............................... CGCAATATCCGAGACGGTGTAGTTGTGGATAGACGA 4750 31 100.0 36 ............................... ATGGAGGAGGCAGGCCTGCATGGGCTGCAATTGGAC 4817 31 100.0 34 ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 4882 31 100.0 35 ............................... CCAGTTTGCAGGCTTTTGGCCTGACTTGCGCTGGC 4948 31 100.0 33 ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 5012 31 100.0 36 ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 5079 31 100.0 35 ............................... TACGAAGTGACGCGCGTACCGTCCGCACGCTCCGC 5145 31 100.0 34 ............................... GGGCAGAACAAGGGTGGCCGCGACGCGCTCTATG 5210 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 5275 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 5341 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 5407 31 100.0 34 ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 5472 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 5538 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 5603 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 5668 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 5733 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 5800 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 5866 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 5933 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 5999 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 6067 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 6132 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 6197 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 6262 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 6328 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 6393 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 6459 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 6525 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 6592 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 6657 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 6722 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 6789 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 6854 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 6919 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 76 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //