Array 1 378-2126 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 378 30 100.0 40 .............................. TTGCTCCTGCATTAGATGGAGGAGCGTATGTAGCGTATTA 448 30 100.0 37 .............................. TTTGCAGAGTTGTATTCTGGCAGTGCGGATATTATAA 515 30 96.7 37 .............................A ATCTAATACAAACAGTGAAGATACTGAATACTGCGGA 582 30 96.7 40 .............................A ACTGTCTCTTAACATATTCTGCAGTTTTACAACTTTCGAA 652 30 96.7 37 .............................G CATAATTGATGAGGCTAATAGAATAGCACCTAATAGA 719 30 96.7 37 .............................G ATTAATGTAATACTTTTTTATAAATTTATAATGCAAA 786 30 96.7 40 .............................G TAATTTCTACGACTTGGATTACTTCACGATGGAAATCAAA 856 30 96.7 37 .............................G ATAGAAGAATTTGATGCTTTATTTGGATGTTTGAAGA 923 30 96.7 42 .............................G CAGCTTGTGGCGATACCTTCAAGTTCAAAATTTTTCCCCATA 995 30 96.7 40 .............................G ACTAACTTTAATTATATCCCTTTCAGCTTCCTCATCATAA 1065 30 96.7 38 .............................G TAGAAATTGTCTCAATAACTGCGTTTGTTGATGGAACA 1133 30 96.7 38 .............................G CAAACAGCATTATAACAATTGATAGACAGAAATTCAGA 1201 30 100.0 36 .............................. ATTGGTGAAGTAGTTGCTTATGACTTAGATAGTGGA 1267 30 100.0 41 .............................. GACATAATTAAAGCATAATAATACTTTAACGCTTCTTTTAA 1338 30 100.0 41 .............................. TATATCTCCCTCCTTAACCTTTTTTTATTTAACATTCCCAT 1409 30 100.0 38 .............................. ATCTACTTGGAACTACAACACTCACAGGTAAATCTAAT 1477 30 100.0 40 .............................. AAGTTAAAACAATGGTTAATGTTAAGGGGGATTAAGCTGT 1547 30 100.0 41 .............................. GACATAATTAAAGCATAATAATACTTTAACGCTTCTTTTAA 1618 30 100.0 41 .............................. TATTACCACCCTCTTGCTTTTAAAAAGCTTTCTAATTCTTC 1689 30 100.0 38 .............................. AATCCAGATTTGAATTGTTCCCAAGCATTACCGAGCCA 1757 30 100.0 40 .............................. TTTTTATCGAAACCTTCTAAAATCATATCTCATCCCCCCA 1827 30 100.0 38 .............................. CTTATTTTAAGTTACAAAAAAGTTTATAGTGGTTAATG 1895 30 100.0 38 .............................. CTTATTTTAAGTTACAAAAAAGTTTATAGTGGTTAATG 1963 30 100.0 38 .............................. CTTATTTTAAGTTACAAAAAAGTTTATAGTGGTTAATG 2031 30 100.0 37 .............................. CTATGTCTGTGATAGTTACAATATTATTTCCTATTTT 2098 29 80.0 0 ..............AA.....G..-A...C | ========== ====== ====== ====== ============================== ========================================== ================== 26 30 98.0 39 ATTAAAATCAGACCGTTTCGGAATGGAAAT # Left flank : TACATTAGTGTTTATTACATTGAGAAACTTTATAATTAAAAAAGATTCATGTAAATTTCTTATTTGTTTATTTAGAGGTTTTAAATTTAATTTCTAAGGGTTTGCTGGTTTGATTGTTTAGAATATTTAACTTAATCAAATTATTTGAATTTTTGAAAATTAGGATTAATTAGGTAAGTAAATAAAATTTCTCTAACAAATAAGTTAAATTTTTAAATTTAAGGAGATAAAAATACTCTGTTTTATTATGGAAAGAAAGATTTAAATACTAAAGGGTTTATATTATGAAGTAGTTACTTACCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAGTATATTATGTTGTGAATGATTGCCCTAA # Right flank : CGTTTTTCTTTATTAAACTCAATTACTCTTTTCTACACTCTTTTATTAAAATCAGAAGAGAAATGAGCATTAAAATAAAATACTAAAAATTCACTCAAAAATCTCTTTTATAATCCCTAAAGCTTTCTCTATATCTTCATATTTTGTAGCATAGCTGAACCTAATATAGTTAGCTCCATTCTCACCAAATGCAACTCCAGGAACACATAAAACCTTATTCTCAATCAATTTCTTAGCTACCTCTACCCCATCTCCATACTCAGAAACATCTGGGAATATATAGAATGCCCCATCTGGCTTATTGACTTTAAAGATATCCTTCAATCCATTATAGATTAAATCTCTCCTCATTTTAAACTCTCTAACCATATCCTCAACACACTTTTGACTACCTCTTAAAGCTGCTAATGCCCCATATTGAGCAAAGGTTGTAGCACATGCAAAGCTATACTGATGAATCTTAATCATATTGTTGATTAAATCTAACTCCTTATTTAGTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGACCGTTTCGGAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 49116-48796 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 49115 30 100.0 40 .............................. CCAGTTGTTATGCTGGGGGTAATGGAGGTTTTTGGCGTTA 49045 30 100.0 39 .............................. TTATCTGTTATTGATACTTTTCCCTTTTCCCAAATAATT 48976 30 86.7 38 ..............TC..G..G........ AGATAAGATTGAAGGCATTAAAACAGTATTTACTGAAG A [48956] 48907 30 80.0 51 A.............TC..A........T.G AGGATGGAAACGGATGAGTATTATATTTCAATGCTTTTAATTTATAAGATA A [48887] 48825 30 90.0 0 A.........................G.T. | ========== ====== ====== ====== ============================== =================================================== ================== 5 30 91.3 42 GTTAAAATCAGACCGTTTCGGAATGGAAAT # Left flank : TGGAGCTTGCATTATAGCAAACTCCAAAGGAGCTGTAGTTGGTGGAGACACAACAGGGCCTGAGCTTTTAATCATTGAAGATGCTTTAGGCCTGATTTAATAACTTATTTTCAATTTTGTTGTTTGGTTAATGGATTGTCTTGTTGAATATGTTTGAAATTTGAAAATAAGAGTATTTAGAAGTTATTAATTAGTTCAAAGGATTTTTATTTAATTTCTAAGGGTTTGCTGGTTTGATTGTTTAAAATATTTAACTTAATTAAATTATTTGGATTTTTGAAAATTAAGATTAATTAGGTAAGTAAATAAGATTTCTCTAACAAATAAGTTAAATTTTTGAATTTAGGAAGATAAAAATGCTTAGTTTTAGTAAAGAGATAAAATTTTAAATACTAAAAGGTTTATATTGTAAGATGGTTATTTACCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAGTATATTATGTTGTGAATGATTGCCCT # Right flank : CTGTTTTAATTAAAATCAGCTTATTGTTATTTTGTTTTTATCTTTATCAATATATTTGAATATAACAATTAATATTTTATAAAAAGTATTTAATAGCAAAAATAACAGAAATTAAAAATTGAATAAAAATGGTGGTATCATGGAAATTATATTTAGAGGAGCGGCGTTAGAAGTTGGAAGAAGTTGTATAGAAATAAAAACTGATAAAAGCAAAATACTATTAGATTGTGGGGTTAAGCTTGGAAAAGAAATAGAATATCCTATATTGGACAACTCCATAAGAGATGTTGATAAAGTTTTTATCTCACATGCCCATTTAGACCATTCAGGGGCTTTACCAGTCCTATTTCATAGGAAGATGGATGTTCCAGTAATTACAACAGAATTATCAAAAAAATTAATTAAGGTTTTATTAAAAGATATGGTAAAAATAGCTGAAACAGAAAATAAAAAAATCCCCTACAACAACCATGATGTAAAAGAAGCTATAAGGCATACAA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTTCGGAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 3 92532-92300 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 92531 30 100.0 39 .............................. TTAGGTAGAGAAATCACGGCAAAAACAGGTAGAGTAACA 92462 30 100.0 38 .............................. TCTTTATCCTTATCAATCTTCTGTTTTGGCATGATTTT 92394 30 96.7 36 ..................A........... CTAATTTTATTATATGGGAATTCTGCTTGCAAATTT 92328 29 80.0 0 ........C.....GT..C.-.A....... | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 94.2 38 ATTAAAATAAGACCTCTTGGAGGATGGAAA # Left flank : AACCCAATGCCCTATTAATGTAATTTATATGGATGAGGATTATAATGTAGTATTCAAAGAAGAGGACTGTGTCGGCTGTAAAAACTGTTTAAAAGCCTGTCCATTTAAAGCAATTGAGATTTTTGAGTAATATATTTATCACGCTGAAAGAGTTTAGACTTATGTTTAATAAATTTAAAGGCTTTATTTCTTTATTTAAATAATATTTATTTAATTTCTAAGGGTTTGCTGGTTTGATTGTTTAGAATATTTAACTTAATCAAATTATTTGAATTTTTGAAAATTAGGATTAATTAGGCAAGTAAATAAGATTTCTCTAACAAATAAGTTAAATTTTTGGATTTAAAAAGATAAAAATACTCTGTTTTAGTAAAGAGATAAAATTTTAAATACTAAAAGGTTTATATTGTAAGATGGTTATTTATCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAATATATTATGTTGTGAATGATTACCCT # Right flank : CAATTTAAACAAAATATCGCAAAATCAGATTTCTGGAATAAAATACTAATTAAATTCTATTTTTTAAATATTTATAAATAAATTTATAACTTCAATAATAGGACTTTTGTAGGAGTAAATATTTCTTGACTTATATCTACCTTCATATAAATTCTATAATGTTTTGAAAGATACTACAATTCTCATATAAAGATAATAGTATATAAACTGCTAAAGTCCTATTCAAAGAAGGTAAAGTTTAAATAGCATAATCTGCTATTATAGTCAATCAATGTTTTTATAACAACAAAAAGAGGATATATGGTTTTTTGCAAAAGTTATTAAATTGACGAAGGAAGATTGACCGCCTTCTATAAGAAGGCGTTCATTATATGCCTTAATGTATTCTAAATATTTGCAAAAACTATAAAAACACAAATTAAAGATTTTAAGGTGATAACTTATGTCAAAAGGAACTCCATCAATGGGTAAAAGAAACAAAGGTTCATATCACATAAGAT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATAAGACCTCTTGGAGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 132922-134001 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 132922 30 100.0 35 .............................. CAGGGAGGTAGGAGGGAGGTTCTCCTTGGATTTCT 132987 30 100.0 47 .............................. CTATTAAGTCCCATGCAGACCTACCAATACGTTCATAGTAAGGCCTA 133064 30 100.0 37 .............................. TATGTTACAAAAGTTGGAGAGGAAGATTTAAAACTTG 133131 30 100.0 36 .............................. TTAATTCTAATGCCTTGTTTTTTACATCTTCTGGAA 133197 30 100.0 40 .............................. GTCTTTAATTTCATCTCTATAGCTTCTTCTATTGCTTTAA 133267 30 100.0 36 .............................. AATGTAAATTTAAAAATATAACGTTGCAAATAAGGA 133333 30 100.0 38 .............................. CAGTAGTTAAAACTTAAAGCACAAAACACCTTCATTCC 133401 30 100.0 42 .............................. GAAGTATTTTTATCTTTTGCGATATTTTCTATAATCTCATCA 133473 30 100.0 38 .............................. TATTTTTGTTGTTTAAATCTATTGTGTATAATGTGGTA 133541 30 96.7 40 .............................C TTTTTGCTTCATTTTCATTTAAATTAACTATAAAACAGTA 133611 30 96.7 43 .............................C ATGGAGCAAAACAACATATTGTTTTAATAGTGGATGATTTTTA 133684 30 96.7 37 .............................C GCATTACAGAATTTATATTATTTATATACTGTTTATG 133751 30 96.7 38 .............................C AAAACACCACCTTCAATAAACTTATCAATTTGATATTT 133819 30 96.7 47 ...............A.............. TGTATTAATTCCAGTTGTAATATTTGATAATGAGACATTAAAATCAG 133896 30 96.7 45 .............................C TTTATCTAATTTAACCCGCTTATGGTTTTAGATGAACCCCGCTCC 133971 30 93.3 0 ...............A.............A | T [133996] ========== ====== ====== ====== ============================== =============================================== ================== 16 30 98.3 40 ATTAAAATCAGACCGTTTCGGAATGGAAAT # Left flank : CAAACAGCTTTATGAATGGTGGCCCTTACTCTTTCCTATACAATGGAGAGCCATTGAGTATGGGGCAGAGAATTGCAAGAGAGATAAAGATGGCTCTACAATTAGATATGATTGATAAGATTATTTCATAAGTTAGTATCTTGTGAAAAATTTAATATTGCTTAGCTTTATTTCTTTAAAACTTTATTCGTTTATTTAGAGGTTTTAAATTTAATTTCTAAGGGTTTGCTGGTTTGATTGTTTAGAATATTTAACTTAATCAAATTATTCAGATTTTTGAAAATTAAGATTAATTAGGCAAGTAAATAAAATTTCTCTAACTAATAAGTTAAATTTTTGGATTTAAAAAGATAAGAATGCTCTGTTTTATTAAAGGGAGAAAATTTTAAATATTAAAAGGTTTATATTATGGAGTAGTTACTTACCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAGTATATTATGTTGTGAATGATTGCCCT # Right flank : ATCCCTTAGCTTTTTTTATATTGTCTTATTAATAGGATAGAAATCTGTAAAAATAGAGTTATTTAGATTTAATGATAATTGCAACATAAAAAAGTATAATGTAATTAATTATTCTATTTAGCCCCATTCTCCTGTTTTACTGGATATGGCATAAATTCAACTGTTCCCCTTTGTCTTACTGGTTGCTTATACAATTCCATTAATGTATAAACCTCTTCAGGAACATTCGTATCTACATCTAAACCAAGTTCTTTAGCTTCTTCAACAGTTATTGGATAGTCATGAGTCCATCTTCCTTCTGTTAATATCTTAGACAATTCTTTGGCTTTTTCTTCTCCATACTTATCCTTCAATAAATTATATACAAAATTTTGAACTTGATTTATTGCTTTTTTAGCAATATCTGCCAATATTAATGTTTGGTCGTCTGCTTTATCAGCCCCTTTCTGCTCTACAGCTTTAACTATACTTGGAGCAGGATATTGCCCAAGTTGTGGGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGACCGTTTCGGAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 236564-238184 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 236564 30 100.0 42 .............................. GATATTATTAAACAACATAATCAGTGTAATTGTATAGATATG 236636 30 100.0 36 .............................. ATTTGATGATTTGGTGGATTATACAAATAGAAATTA 236702 30 100.0 39 .............................. TACTGTTAAATATTCAGATTTATTAATCAGTTATTTCCT 236771 30 100.0 38 .............................. GATTTTCTTATGTTTAAAATCCTTATGAACGCTCGGAT 236839 30 100.0 36 .............................. TCTTTATCTCTCTTTACAGTATCGTATCTTAATTTT 236905 30 100.0 51 .............................. TTTTCAACAAGCATTTCTAACAAGTTTGGAGGTAATACTGCAACAATTTCA 236986 30 93.3 38 G............................C GTGATTGTAGAATTCTCATCTTCTTCTTGGGAGAGCCG 237054 30 100.0 38 .............................. GATTGGATGAGGGATATATCCAAAACTCAAAAGGATTG 237122 30 100.0 37 .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237189 30 100.0 37 .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237256 30 100.0 37 .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237323 30 100.0 37 .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237390 30 100.0 37 .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237457 30 100.0 37 .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237524 30 100.0 37 .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237591 30 100.0 43 .............................. TCATTTGCATCATTTGTGCTGGGTCTGGCTGACTCTGTGTGTC 237664 30 96.7 35 .............T................ TTCTTGGAATTGCTAAGTGGTTTATGCATAGTTGC 237729 30 100.0 37 .............................. ATGAGATTCATTCTTTGATCGAGGGCGATAGAGGTTC 237796 30 100.0 39 .............................. GAATTTTCGCACACGCGCTACATCTAATAAACAGATTTG 237865 30 100.0 38 .............................. GATGAAAAGAAAGCAATTGAAACAGCTATTATAACTTA 237933 30 100.0 47 .............................. ATACCATTAACAATTTCATATATTCTGTTTTTGTATTCAATCTTTTT 238010 30 96.7 47 .............................C GCATAGATTATTTTTAAGCTGTTTTTTGGATTTTCTAATTTTAAATT 238087 30 93.3 37 ............................CA ATGTTCTAAATTCTCCTTGTAATTCTCCTAATGTTGT G [238111] 238155 30 96.7 0 ........................A..... | ========== ====== ====== ====== ============================== =================================================== ================== 24 30 99.0 39 ATTAAAATCAGACCGTTTCGGAATGGAAAT # Left flank : AAGTCCAGCTACCGTTGTTAAGTGTTTAACATGTGGGAAGGTTTTAGTTGAGCCAAGAGGAGGAAAAGGAAAAGTTAAAGCCAAGATATTGGAGATTTTAGGATAAATCTTCCATCCATTTTTTAATAATTTGTTTATCACGTTGGAAAAGTTTTATATTTGATAATAATTAATTTGAAATTTTTATTTGGTTATTTAATATAATTTTATCTTATTTCTAAGGGTTTGCTGGTTTGATTATTTGGAATATTTAAGTTTATTGAATTATTTAGATTTTTAAAAATTAGGATTAATTAGAAGAATAAATAAAATTTCTCTAACAAATAAGTTAAATTTTTGAATTTAAAAAGATAAAAATGCTTTGTTTTAGTAAAGGGAGAAAGATTTAAATACTAAAAGGTTTATATTATGAGATAGTTACCCAACCTTAGAAAAATAAGGTATAGGAAAGCTTAAATATTAGAAAAGTAAAAGTATGTTATGTTGTTGATGATTGTCCT # Right flank : TCCTCCTCCCTCACCAGATTTTTCTAATCTTAAAAATTATCTATTATCAAAAATAAAAGTTTAAAAATAGCAAAGTTCTCTTTTTAAGATTTCCATCTTCAATTCCTACGAGGTATTTTTTCATCTGGGAATATTATAGCGTTGTTTTCACAGCACATTATAGAGCAAGCATTACAATTTACTATGCAACTATATGGATATTTAACTACAACCTTTCCGTTTTCTGCATCATAAACTCCTCTTGGACAAAAAGAGATACATTTTTCACAATTTTTGCATCTATTATAATCAATTTTGGGATACCAAGAGATATCTTTTCTTTTTTTACCATATTCTTCATAAAACATCTCTTTTATTGCATCATAATACTGTCTATATAGCTTAATATTTGGCTCTCTAACAATTTTTGTAACTTTTTCATAAGCTTCGTAAATATCACTATCTACATTTAACTCCTGCATTAACTTTTTAATTTCTAAATTTAAGATAAGAAACTCTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGACCGTTTCGGAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 6 352469-351694 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 352468 30 100.0 36 .............................. TGCTCCTCAAAATGTACAAAATACTCAGATTAAATC 352402 30 100.0 36 .............................. CAAATATTACCCTATAACCTCTTTTACCTCTATTGT 352336 30 100.0 41 .............................. ACAAATCAACATAAAAATAACTTCAATAAAAGTTGAGTTAA 352265 30 100.0 37 .............................. TTATTCATTTTGGGAACTGTATTATCTCTATTATTAT 352198 30 100.0 39 .............................. TTCTACAACTTTAACACTTACATAAATAACTCTCTCATC 352129 30 100.0 37 .............................. AATCCACTACCTAATCCCATATCAGCTGGTAATCCAC 352062 30 100.0 36 .............................. GAAGGGAGGACTTTCCCCTGAACAATTGGAAAAATA 351996 30 100.0 40 .............................. AATGCTTACACTGATGAACCAGATGGGGAAGAGCAATATG 351926 30 100.0 36 .............................. ACCGTATTAAAATACATACAACAAATAGAAGATGAC 351860 30 96.7 39 .................A............ CTTAAATAAGATTTTTTATCTTATTTTTTTTTATTGAAT 351791 30 100.0 38 .............................. AAATCGACATCTTGGACAATTTTATGAGCTTCAACTCC 351723 30 93.3 0 .................A...........C | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 99.2 38 GTAAAATCAGATCCCTCGGGGAATGGAAAT # Left flank : TCAAACCCAAAGATAACTATAATTACTGAAGAGGGAACAGACCCTTTAGAAGTTTTAAAGGAAGGGTTGAGAGATATTATTAAAATGTGCGATACTTTACTGGACGAACTAAAGGAAAAGAAGTAATTTGAATAGTATCACGTTAAAAGATTTTATATTTGGAATTAATTTCTTTAACTCTTTTCTTAACTTATTTAATAGAAGTTTAAATTTGATTTCTAAGGGTGGCTTATTTTAAACATTTTATTAATTTGGATGTATTAAATTATTTAGGTTTTTGGGAGTAAGGGCTAAATACATTTAGGAGTAAGATTTCCCCAATAAATAACAAACACTTTCAAATTTAAAGTGATAAAAATGATTATTTTTATTAAAGAAATAAGAATTTAACTACCATAAGGTTTATATTGCAAAACGGTTATTTATCCTTAAGAAATTATGGTATAGAAAAGCTTAAATATCAGGAGAGTTAAGGTATAATATATTGAAAAAGTCCCCCT # Right flank : AACAGATGAATAGGGAGAAGGGAATGGAAACTCATTAGAAGATAATCAATGTTAAAAAAAGAATGGGACTATGTAAATAAAATCTTGAAGAAAATTAAAAATATAAGAAACCTTCTTCAAGATGAGAGTATGTATGTTATTATTGTCTATGATGTGAATGTTTCAAGAGTAAATAAGATAAAAAGCTTTTTGAGAAAGCACTTAAATTGGGTTCAGAATAGTGTTTTTGAGGGAGAAGTTACAAAGGCAGAGTTTGAAAGAATAAAAGATGGAATTTTGAGAATTATTGATGAAGATGAAGATTCAGTAATTATCTACCAATTTCCATTAAATTTTATGCCAAAAAGAGAGATTTTAGGTTTAGAAAAGAATCCAATTGATGATATTATTTAATAAAAATTTCCAAACCATTCCAAAATACTCTGAATAATTAGAGGAGATATTCTTACACTTTTTAACTTTCTTATAGCTGAATATACTGCATCTAAGTCATCATAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATCAGATCCCTCGGGGAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 7 428572-429572 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 428572 30 100.0 41 .............................. TAACATAACAAAAATTCATCAAGTGTTTTACATTTTATGTG 428643 30 100.0 39 .............................. TTAATTCTATTTTTTATTTCAGTTTTGTCAATTTCTGAT 428712 30 100.0 40 .............................. AATAATATAAGTTGGCCAATCATTTCTCGGATGGTCAACA 428782 30 100.0 36 .............................. CGAAACAGATATATTAGGAAATTATATTGATGATAT 428848 30 100.0 38 .............................. TTTGGCAATTTATATAGCTCAATTGCGTATTCTTTCTT 428916 30 100.0 45 .............................. ATGAACTCTTTTAAATTATCTCTTTTACTACCCCTACAAATTCCC 428991 30 100.0 37 .............................. TATTTACCTAATATTTTGATTAAATACTAAAAATTCT 429058 30 100.0 36 .............................. TTTTTAGGTAGGATACTGAGGGCTGTAAGTTTTTTT 429124 30 100.0 46 .............................. TCAGAATTCTCATCTGCATATTGCTTCATTATTCTCTTTAACGTTA 429200 30 100.0 43 .............................. GAGTGTGGATATGTTGAAGATTTTGGAGTTGATTATTGTGGTG 429273 30 100.0 38 .............................. TTATAACATAAGATTTTTATGTGTTCTTTTTGTTTTCT 429341 30 100.0 38 .............................. ATACTCAGATTTTGTTGTATGATTTGCATCTTTATTTT 429409 30 100.0 36 .............................. TTCGGTTATCAAAAAGTTTAAATTTATGATAGGAAT 429475 30 100.0 38 .............................. TTTTTAACGAGAGTTTTCAGAGCATTTAGCTTTTTTGA 429543 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 15 30 100.0 39 GTTAAAATCAGACCGATTCGGAATGGAAAC # Left flank : AGTAAAAATCCTTACGGAGAGGATAACCTTTAAATATTATTTCAAAAAAGACAATATATATTTAGTATTTATTGATACTACCTTGATAATTTTATTATAGGCATAGGATTTTCAATTTTGTTAATTGATTTATGGATTGTCTTGTTGAATATGTTTGAAATTTGAAAATAAGAGTATTTAGGATTTATTAATTAGTTCAAAGAATTTTTATTTAATTTCTAAGGGTTAGCTGGTTTGATTATTTAGAATATTTGAGTTTATTGAATTATTTAGATTTTTGAAAATTAAGATTAATTAGATAAGTAAATAAAATTTCTCTAACAAATAAGTTAAATTTTTAAATTTAAGGAGATAAGAATGCTCTGTTTTATTAAAGGGAGAAAATTTTAAATACTAAAAGATTTATATTATGAGATAGTTATTTATCCTTAGAAAAATGTGGTGTAGAAAAGCTTAAATATTAGGAGAGTAGTATAAATTATATTGTGGATAAGCCTCCT # Right flank : CTAAGCTTCACCTTTTAACAAATAATAAGCACTTGATTAAAATCATATCTCTTAGAGAATAAATTATGCTCTTTTTAGTACAAAATAGTTATTAATAAAAAAGATTATCTAAAAAATCTTGCTCCTTGCTTAGTTCCTCTTTTTTTCAATATCTCACTCACTTTATTCATAATCTTCAATCTACCTAAATACCATTCTGGAGACACCTTAATACTTTCAGGAACTTTATCCTTAGACAATCTTTGAATTAACACATAAGGAGAGAGATGTTCTAAAAAATCACAAACTAAGCTTATATACTGATTTTCATCTAATGTCCTATATTCTCCTTTCCAATACATCTCCTCTAATTTTGTCCCTTTAACAACAACTAAGGGATATATCTTAACTGCTTCAATCTCTAACAGAGATAAAATTTTTGCTGTCTCCATCATCTCTTTCCAACTCTCTCCAGGAAGACCCAAAATCACATGCCCACAGACCTTTATTCCTCTTTTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGATTCGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 8 501491-501990 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 501491 30 100.0 37 .............................. GTTGAAAATATTTTGATGATTTCTTACATACTTTTTA 501558 30 100.0 42 .............................. GGATAGTGGGGGCTGGTATTGGGATTGTGGAATATGGACGGG 501630 30 100.0 36 .............................. GTTAAAGGAGGTAATCTAACGATGAGGGAGGGCAGA 501696 30 100.0 29 .............................. GGTGTGTGTGCGTGTGTTGGGGGAGGCAG Deletion [501755] 501755 30 100.0 37 .............................. GTTATTTCGATAGCTTCCTTGGCATCCTCTGCTTCAA 501822 30 100.0 38 .............................. ACTTGATGCCGTAAAAAATCTTAGATTGCTAACCCAAT 501890 30 100.0 40 .............................. CTTTTCAAATACTTCTACTTTCAAATTGTAACTATCATAA 501960 30 83.3 0 A.......A..............C.AC... | A [501984] ========== ====== ====== ====== ============================== ========================================== ================== 8 30 97.9 37 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Left flank : GTAAGTAGCTATAATTTTATAAGTTATATTTAAATATTAATTTTCATAAGAAAGAAGACAAAAATGTTTGTATATGAATTTGCCTATAATCTATTGTAGGTTTGGAATTTCTGATTTTGTTGTTTGGTTTATGGATTGTCTTGTTGGATAAGTTTAGAATTTGAAAATAAGAGCATTTAGGAATTATTTCTTTATTTAAATAATATTTATTTAATTTCTAAGGGTTAGCTGATTTGATTGTTTAAAATATTTAACTTAATTAAATTATTTAGATTTTTAAAAATTAAGATTAATTAGGTAAGTAAATAAAATTTCTCTAACAAATAAGTTAAATTTTTGGATTTAAAAAGATAAAAATGCTCAGTTTTATTAAAGGGAGAAAATTTTAAATACTAAAAGGTTTATATTGTAAGATGGTTATTTATCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAGTATATTATGTTGTGAATGATTGCCCT # Right flank : AAACTATTTTAAAAACTAAAAATAGCAACTAAAAAATAATTATTTTTCTTCTCTATGTTGTAGATGATGAGATAATTTTAGCTATTCTGTATGGAATTATCGCAAGCATTCCTAAAACTAAATATACAGTTAAATCGTTAAAAAATCCCCAATCTGCCCAATCCTCAAACCCCAATAAAAATCCAATAGCATCAGATATTAAAATCAAAAATGCAATAACCCCAATTCCCAAACCAATAATAGAAGCAGTAAATAAATAAGAAACTGCTTTTATATCCCTATCCACAGCTTTTTTTACACCTAAAAAATATGCTATTCCAACAGCTAATAAAGCTAAACCACCAAATACATCTCCTACAAATAATGGCAATTCAATTTTAAAGCCCAATATTGAGTAAAGCCCAATTATTATTTCAATAATCCCAGAAACTGTGAATAGTAATCCAAATACCAAAGACAAGCTAACAATTACATTTCTCATATTCTTTATGTCCATAATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTGGAGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 9 507264-508116 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 507264 30 100.0 48 .............................. TCTGATTTTAACTACCGAAATTTTTATATATGGATTTATATATAAATT 507342 30 100.0 35 .............................. TTTTATCCCTCCAAAAAATAAAAGAATAAATAAAA 507407 30 100.0 38 .............................. AGTGTAAATGAAGATTTCTTAACTATATTGCAACAAGC 507475 30 100.0 32 .............................. AATTCTCTACAGAAACTAAATACAAATGACTT 507537 30 100.0 39 .............................. CAAAACATGAGTGCAGAAGAGGCAAATAACATTCTACAA 507606 30 100.0 35 .............................. CCCCCGAAAAGGTTGGAAACTCAGCAAAACTAATC 507671 30 96.7 43 .............................T ATGGAACAAGAATGAGAATCTCTGGAGTGGATGTTATTAAAGT 507744 30 100.0 42 .............................. CTTATTGCCTCTTCAAATCTATAAACTATAGCATCAACACCG 507816 30 100.0 38 .............................. TTTTTATTTTAATAATGTTTCTATCATCTTAATTTTGA 507884 30 100.0 38 .............................. TTTTTATTTTAATAATGTTTCTATCATCTTAATTTTGA 507952 30 100.0 36 .............................. AACTAAATCTAATTGAGATTTTTTTGGTTCATGTCT 508018 30 90.0 38 A............T.A.............. ATAGTTCTTTTTCCTTCTACCTCCCAAAATTGTTTATA 508086 30 76.7 0 A.............TC.AA..G...A.... | A [508105] ========== ====== ====== ====== ============================== ================================================ ================== 13 30 97.2 39 GTTAAAATCAGACCGTTTCGGAATGGAAAC # Left flank : AAACAGCGACTTTCATACAATCACCATAAAATTGGTTGGTTATAAAAATATAGAGTAAAGTATATATTTTTTGTTACCATAATTTTATTATAGATATAGGTTTGGAATTTCTGATTTTGTTGTTTGGTTTATTGATTGTCTTGTTGGATAAGTTTAGAATTTGAAAATAAGAGCATTTAGAAGTTATTAATTAGTTCAAAGGATTTTTATTTAATTTCTAAGGGTTTGCTGGTTTGATTATTTAGAATATTTAAGTTTATTGAATTATTCAGATTTTTGAAAATAAAAATTAAATAATTATCTAAATAAGATTTCTCTAACAGACAAGTTAAATTTTTGAATTTAAAAAGATAAAAATGCTTAGTTTTAGTAAAGAGATAAAATTTTAAATACTAAAAGGTTTATATTGTAAGATGGTTATTTACCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAGTATATTATGTTGTGAATGATTGCCCT # Right flank : CTAAGAAAAATTATATTTCACTATTTTTTCAAATATTTTTAGTATAAAGAATAAAAATAATTAAACTTCTTTAAGAGAAAGCTTTTCCTAAATAGTTTTAATCAAATTTAAAAATAGAACATTATATTCTCTTTTTAGCTTATGAACTAAAAATATAAAAGGTTAATAAAAAGATGCTCCAATAACTCCTAACTCCCCAATAAAGAAAAATTTTAAATATACATGGTCTAAAATTTTGTGTGGTTAATCTTATCAATTATAAAATAATTTTTGGTGTAAGTTATGACAACAGTAATGAAGTTTGGAGGAACTTCTGTAGGTTCTGGAGAAAGAATTAGGCATGTGGCGAAAATAGTAACAAAGAGAAAAAAAGAGGATGATGATGTGGTTGTTGTAGTTTCAGCAATGAGTGAAGTAACTAACGCATTGGTGGAGATATCTCAGCAAGCTTTAGATGTTAGAGATATCGCAAAAGTAGGAGATTTTATAAAATTTATTAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTTCGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 10 858344-858112 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 858343 29 100.0 40 ............................. AAACATCCTCTCACCTTAAAAAGTTAAAAAAAGAATTTAG 858274 29 100.0 38 ............................. CGATATTAGGAGTCAGTGTAGGAGAAAGATACTCTTTA 858207 29 96.6 38 .......A..................... TAACTATCTTATACTTTTGGTATCTATTCATCTTTTTA 858140 29 82.8 0 ................AA....T.TT... | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 94.9 39 TTAAAATCAGACCTCTTGGAGGATGGAAA # Left flank : CCAATTAATTGCTAATGATTTTTATAGTTTGATGTTTATTTAAAAAAGCATTTTCAGAAAATTACTTATAGAAGTCTGTTTATAATTTATTATTTGGGTTTTAGGATTTTTAATTTTGTTGTTTGGTTAATGGATTGTCTTGTTGAATATGTTTGGATTTTGAAAATAAGAGCATTTAGAAGTTATTAATTAGTTCAAAGGATTTTTATTTAATTTCTAAGGGTTTGCTGGTTTGATTATTTAGAATATTTAAGTTTATTGAATTATTCAGATTTTTGAAAATAAAAATTAAATAATTATCTAAATAAGATTTCTCTAACAGACAAGTTAAATTTTTGAATTTAAAAAGATAAAAATGCTTAGTTTTAGTAAAGAGATAAAATTTTAAATACTAAAAGGTTTATATTGTAAGATGGTTATTTACCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAGTATATTATGTTGTGAATGATTGCCCTG # Right flank : CTTGGATATATTGGAATAAACTCAACTTTTTATTTTATTACTGTAAATCCACATATTTAAAAATATAATAACAAAATTTAAAATCCTCAACTCACATAATTCTTCTTGGTGAGAATTAATGATAATTGAGATAGAAGGAATTAAACTAAAACTACATCCCGAAGTTTATGAACCTGCTGAAGATTCAATTTTATTACTAAAAAACCTTGTAGATGTTAAAAATAAAGATGTTTTAGAGATAGGTGTGGGAACTGGATTAATATCAATTGCATGTGCAAAAAAGGGAGCTAAAAAAATTGTTGGTGTTGATATAAATCCTTATGCTGTAAAATTAGCTAAAGAAAATGCCAAACTAAATAATGTTAATATCTCATTTTTTGAGAGTGATTTATTTGAAAATGTTACTGGAAAGTTTGATGTTATATTATTTAACCCTCCCTATTTACCAACATCTGAAGATGAAAAAATAGACAGCTATCTAAATTTTGCATTTGATGGAG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAAATCAGACCTCTTGGAGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 11 1034820-1035753 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 1034820 31 100.0 43 ............................... CCTTTATATTTCTCTTTCAAATAATCAACCCTTTTTAAACCTA 1034894 31 100.0 37 ............................... GAGCTTTTTATTATCAGATATAGTTAGAGAGTTATTT 1034962 31 100.0 36 ............................... AAAGAATAAAATCTCGTTTTTAGTGCTATTTATTGA 1035029 31 100.0 40 ............................... ACTGCTTGGGGAGATGCTGAGAGAAAAGCAATGAAAGATG 1035100 31 100.0 37 ............................... TCATATAAAAATTCATCACTATATTTTTCAATTAAAT 1035168 31 100.0 42 ............................... TTAACAGTATATTCAAACCGTGAATATTCCGTTTCATCAAAT 1035241 31 96.8 36 ..................T............ CTTTTTTACAGTTGTATATCGATAGATTTAAATTTA 1035308 31 100.0 35 ............................... TTGAATCCTGTTTTTTTAAGTTCTTCTATGAATAT 1035374 31 100.0 39 ............................... GGGGGTCTTTGAAATTAAGAGGGTGGGGCGTGGAATTCA 1035444 31 100.0 46 ............................... TTTTTCTACAGTTGTAGGTAATGCAGATTTGTTTATTCCTTTATTT 1035521 31 100.0 38 ............................... ATTCTGATTTTCAATTTATGTTCAGCTCTTAATTTCAT 1035590 31 96.8 36 ..............................C TTTATTTTTTAACCTTCTCCGCCTCCTCTGGAGAGG 1035657 30 80.6 37 A.............GT..C.-.A........ AAAATTGAGAGATTATTAGAGGAATTATATCCAGATG 1035724 30 77.4 0 A.............GA..C.-.A.......C | ========== ====== ====== ====== =============================== ============================================== ================== 14 31 96.5 39 GTTAAAATCAGACCTCTTGGAGGATGGAAAT # Left flank : TCTGTATCATCAATGCCAATAAACATCATAACCACCTTTAAGTTATTACGAAGTGTGGCAAATTACTTATAGAAGTCTGTTTATAATTTATTATTTGGGTTTTAGGATTTTTAATTTTGTTGTTTGGTTAATGGATTGTCTTGTTGAATATGTTTGGATTTTGAAAATAAGAGTATTTAGAATTTATTAATTAGTTCAAAGGATTTTTATTTAATTTCTAAGGGTTAGCTGGTTTGATTGTTTAAAATATTTGAGTTTATTGAATTATTCAGATTTTTAAAAATTAGGATTAATTAGGTAAGTAAATAAGATTTCTCTAACAGACAAGTTAAATTTTTGAATTTAAGGAGATAAAAATACTCTGTTTTAGTAAAGAGATAAAATTTTAAATACTAAAAGGTTTATATTGTAAGATGGTTATTTATCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAGTATATTATGTTGTGAATGATTGCCCT # Right flank : CTTGTTGTAGTGGTAGCAATTATAAAATAGGAGTTATTTTCTTAATATTGAAGATAAAATATACTTAATACATCGCCAAAAAATATTAAAAATAATTATGGATTTAACCCTACATCAAATAACCCCTCTTTTTCATCAAATCCAAACATTATATTCATGTTTTGTATTGCTTGCCCACTCGCTCCTTTAACTAAATTATCTATTGCTGAGATAACTACCAATCTACCATGCTCATCAATCTCAAATCCTCCGATATCACAGAAGTTTGTTCCTCTAACCCATGTTAATTTTGGAATCTCTTCTGAAAATATCCTAACAAAAACCTCACTCCCATAGAATTTTTCATAAATCTTAATTATCTCCTCTCTATCAACATCTTTAGCTAAGAATGTGTGTGCAGTTGTTAAAATTCCTCTTGTTATTGGAGCTAAGTGAGGAGTGAATGAAACCTTAGCCTTTCCAAGCTTTTTTAACTCCTTCTCAATCTCTGGAGTGTGTCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTGGAGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 12 1049373-1050236 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1049373 30 80.0 42 TGCCCT........................ CAATTTTTGTTAAAGATTTGGATGAGTTCTTCTTTGATATTG 1049445 30 93.3 43 .CA........................... CAATTTGGGCATTTCCCAACATAAACATATAATGAATCCATAC T [1049448] 1049519 30 100.0 39 .............................. AGAAGTTTTTCTTGGACAAATCTTACAGGGTGTTGTCCC 1049588 30 100.0 36 .............................. TTGTGTCCATTGTAAGCGTTAAAAATAATGCAAATT 1049654 30 100.0 41 .............................. TATTTTATCACCCGTTTATGTTTTTTACGGTTAATACTATA 1049725 30 100.0 37 .............................. AACTACTTTGTAGATGATTTTTTAGAGGATTTGGAGA 1049792 30 100.0 46 .............................. GATACATAGTATTCTCCATTTTTCTTTTCAATAACTACATTACATC 1049868 30 100.0 41 .............................. TTGAGTGTGGAATTAGAAGAAATAAACTTTAGGAAAGGTTA 1049939 30 100.0 36 .............................. ATAAAATCTCTAACCTCTCCAGCGTTATCAAAAGTA 1050005 30 96.7 45 .............................T TCGTTATCTGGTCTCATGTATGGTTCCAAAAACTTCAATGTGAGA 1050080 30 93.3 43 ......................G......T TATAGTCATTTGATTTACATACACTAACTCTGTAAGCTCTTGT 1050153 30 86.7 23 ..............TC..G..........T TAGATAGATTATTATTTTTAGTG A [1050173] Deletion [1050206] 1050207 30 90.0 0 ........C......A..T........... | ========== ====== ====== ====== ============================== ============================================== ================== 13 30 95.4 39 ATTAAAATAAGACCGTTTCGGAATGGAAAC # Left flank : TAAAGCTTTATTATCACAAAATGTTTATATACGAGTCTGTAGATAATTTTAATTATAGTTTGTTTAATAATATTCTATCGTTATTCTATCATTACATTATTAGGGTTTTAGGATTTTCAATTTTGTTAATTGATTTATTGATTGTCTTGTTGTATAAGTTTGGAATTTAGAAATGAGAGTATTTAGGAATTATTTATTTATTTAGAGGTTTTAAATTTAATTTCTAAGGGTTAGCTGGTTTGATTATTTAGAATATTTGAGTTTATTGAATTATTCAGATTTTTAAAAATTAAGATTAATTAGTAAAGGAAATAAGATTTCTCTAACAGACAAGTTAAATTTTTGAATTTAAGGAGATAAAAATACTCAGTTTTATTATGGAAAGGAAGATTTAAATACTAAAGGGTTTATATTATGGAGTAGTTACTTACCCTTAGAAAAATGTGGTGTAGAAAAGCTTAAATATTAGGAGAGTTGAAGTATATTATGTTGTGAATGAT # Right flank : CAATAGGGTTTTATCTCTTTTTCATAAATTTCTATTGATTAAAATCAGCCTCTTAGAAGTATAAAACGGGATTTTATATCTTTTAAAGCTGAAAATTATAAATTTGAAAGTAAGAATAATTTTTAACCTTAATAGTAAGATATTAAATAGACAAAACTTTTTTTATCTTAAGCTACAGAATTATAGAAACTTTTTTAAAAGAATTAAACAAATCTTAAAGAGCAGAGTATATACAATTTGGTGATATTATGGACAAAAAATCCAAATTAATAAACCTGCTAAAAGAGGTTGGTTGTATAAGATTTGGAGAATTTATCTTAGCCTCTGGTAAAAAAAGTAACTACTACATAGACATAAAAAAAGCCACCACAAACCCAGAAATTTTAAAGTTAGTTGGAGAAATTATTGCTGAGCAAATAAAGGATGAAGATGTAAAAGTTGCTGGAGTAGAGCTTGGTTCTGTCCCTATAGCTACAGCTGTCTCAATTATTGCTCAAAAA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATAAGACCGTTTCGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 13 1220166-1219844 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 1220165 31 100.0 43 ............................... CAATTGTCTAACTGCTTCCCCTAATCCTTCCTTTATATCCTCC 1220091 31 100.0 37 ............................... GTTAATTGCATTCTGATAGTTCATAAATGACACCATT 1220023 31 100.0 42 ............................... TTAATAAATTATTATTATTATTGTAATATATTAGTTCTCCTC 1219950 31 96.8 45 ..............................T TATAGCTAAAAATATCAATATAATTGGGAATAAATTAATCTCCTG 1219874 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================= ================== 5 31 99.4 42 GTTAAAATCAGACCTCTTGGAGGATGGAAAC # Left flank : GCTGTATTAAGATATGATTAATAGAGATTTCTTTATGCTTATTGTATTTTTTACATAATATTTTTATTACCAATTTATAATTTTGTCGTAATACACTAGGACTAGGATTTTTAATTTTATATGGATTTGGAAAGTTTATCTCGTTCAATACATTTATAATTAGGAAAAACCCATTTAAAATCTGATATCATTATTTTTAACCTTTTTTATCTAATTTCTAAGGGTAGCTTATTTTAAAAATTTTATTTATTTGGATTTGTTAAATTATAGGGATTTTTAAAAAATTCTACTTAATTGTTTTTATTTTGAGATTTCTCCAATGATTAATTTTTATTTTGAAAATCAAATATTTTAAAAACCAAGTTTATACCATAGAGAAAAGTTTAAATATTGGTTAATGGTATATAAATAAAAGGTGAAACCTACCCATCGGTAAAATGTGGGTAGTAAAATATAAATATCAGAAAGATTATAAAATAAATCATCTGATATGACCGCCT # Right flank : CTTTATGAACTCTAAATCACTCTCATTGAGATTTCCTGTAGTTAAAATCAGGAATGGATGATATTAAGATTTAAAAAAATTAATTTTTAGCTTTTTTATTACATTTTGCAACAAATATATGCTTCACCACTATTGGAGTTATTGTAGCTGTTATTACAGAGAGAGCTACAATTGTTACAAATATTTCATTTCCTATTAAACCAAGTTCTCTTCCAATTGATGCTGCTACTAACGAAGCTGAAATTTTTGGAACTGTTAATAAACCTCCAATAGTATTTTTTATTCTATCAAAACCTAAAATTCTTAAAGCGATAAAACCAGAGATAAATTTTAACGCCACTGCTGAAATTAGTGTGATTAATAAAAGCTCTAAGTTACTTAAATTAAATATAACTCTTATATTTGTCTCCATTCCTAAAACTAAGAAGAATATTGGTATAAAGAAACCATAACCAATTGCATTCAAATTTTTGTTTAGAAGTTCATCATGCTCTTCTTTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTGGAGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 14 1267046-1267754 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 1267046 30 100.0 40 .............................. CTTATATTCACTTGTATAATTGTTTTCTATTGCATTCAAA 1267116 30 100.0 36 .............................. CCGCATTCTTTTTGTATTTTTAACTCTTCTAAAATA 1267182 30 100.0 49 .............................. CAAAGCTGAAATTACTGAGGAAGATACTGAGAAAGTTATAATTAAAATA 1267261 30 100.0 37 .............................. CGAAAAAGAGGGTAAATTAACAATCTATAATATTGAG 1267328 30 100.0 47 .............................. CGCATTCCATTACCTATATATATACCGTTTATATAGCCGTTTCCATT 1267405 30 100.0 37 .............................. CTTTAATTCTTCAATGCTATTAACAGTTTCATCCCTA 1267472 30 100.0 46 .............................. CTGAGTATGGCCTATTGGGATGACAACATACTTAATTAGCCCATTT 1267548 30 100.0 37 .............................. TTAAACTCTTTTTTCTTATCTTCTGACAATTGTAAAT 1267615 30 100.0 39 .............................. TTATGTGGTTTTAGAGGATGGGAAGATTGTAGAAAAGGA 1267684 30 96.7 11 ..........................A... CTTTAGCATTC Deletion [1267725] 1267725 30 73.3 0 A.......A....G.A..A...A..AA... | ========== ====== ====== ====== ============================== ================================================= ================== 11 30 97.3 38 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Left flank : AAATAGTGAATCCTAATCATGCTTTATTTTTTTTTGCATCATTATATATTTATATGGATTCCATAGATATTATATTTTAGAATTTTACTATTAAGGTTTTTATGGGATTTTTAATTTTGTTGTTTGGTTAATGGATTGTCTTGTTGAATATGTTTGGATTTTGAAAATAAGAGTATTTAGAATTTATTAATTAGTTCAAAGGATTTTTATTTAATTTCTAAGGGTTAGCTGGTTTGATTGTTTAAAATATTTGAGTTTATTGAATTATTCAGATTTTTAAAAATTAGGATTAATTAGGTAAGTAAATAAGATTTCTCTAACAGACAAGTTAAATTTTTGAATTTAAGGAGATAAAAATACTCTGTTTTAGTAAAGAGATAAAATTTTAAATACTAAAAGGTTTATATTGTAAGATGGTTATTTATCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAGTATATTATGTTGTGAATGATTGCCCT # Right flank : AAGCTTATAACTGGAATTTTTTATAAACAAAATAAAAATATTATACCATTCCAAAAATCTCAAAATATTTTTTCTGTCTAACAACCATCACTGGGATGTTATTTTCCATTAATTTTTCCTTAAGTTCTTTATCGTTTGTTGCTACTATAACGTTTTCATTTTCCTTTGCATAATTTAAAATTGCTTCATCTGCATAATTGGCAGTGTAATCAACTAACTTATAGTTTTTTATCTTTGCAAGAGCTAAATTAACAGCCAATTTTTCTTTACCTTTTAAATCTCTACTTTTTAATAACCTTTCCAACTCCTCTTTTATTGGAGATAAAATAACAATTTCAAATTTTGTATTTAAAGCCCTCTCTATCTCATAATCAAAGTTTATCTTATGCTTAAAAACGTAAATTAAAAAGTTGGTATCTGGAACTATTTTATACATATCTTAGATTCACCTCTTTTTTATATGAAATATAAGAATCCATGCTTTAGCAGTTCTTCATCTA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTGGAGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 15 1457336-1456716 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 1457335 30 100.0 39 .............................. TTTAAATGCTTTTACTAAATATTTTGTTAAATAATTCGT 1457266 30 100.0 41 .............................. TACAAGTATATTATAAGTGTATTGGTAGTATATAAATTTTT 1457195 30 100.0 47 .............................. TCTGTTTTATCAATTTTTCAGCTTCATCTGGTGTTATTATGAATAAT 1457118 30 100.0 42 .............................. TCTGCCCGCTCTTACCTTTCACGGCAATATAAGCATTAAACG 1457046 30 100.0 41 .............................. CGTTAAACAATCTGCTATGATAATCATAACTAAATTCATTT 1456975 30 100.0 49 .............................. CGAAGTATCTTCATTTACTATTACTAATTGATAACCTTGTGCATCTTTA 1456896 30 100.0 48 .............................. CTTATCTCCTCCATTTTTATCTGTAAAAATTTTATTAAAATTAAAATA 1456818 29 76.7 45 A.......A.....GT..C.-.A....... TATAATTTAACTAAAAACTTGTATGCAACTGCAACGTCATTTATT 1456744 29 73.3 0 A.......A.....GT..C.-.A.....G. | ========== ====== ====== ====== ============================== ================================================= ================== 9 30 94.4 44 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Left flank : GAAAGCCAAATGCAAAGGTTGGTAGAAGAATGGGAGTTGCTTTAGCTTATGCCGATTCTGTAGAGAAGGCAAGGGAATTGGCTGAAAAATGTGCTCATGCAGTTAGAATTGAATGATTGGATATTTAGATAATATTTGTCTTGTTGAAAAAATTTAAATCTATGTTTAATTAGCTTATAAAATCTATTTCTTCATTTGAGAATTTTTTATTTAATTTCTAAGGGTTTGCTGGTTTGATTATTTAGAATATTTGAGTTTATTAAATTATTTAGATTTTTAAAAATTGAGATTAATTAGGTAAGTAAATAAGATTTCTCTAACTAATAAGTTAAATTTTTGAATTTAAGGAGATAAAAATGCTTAGTTTTAGTAAAGAGATAAAATTTTAAATACTAAAAGGTTTATATTGTAAGATGGTTATTTATCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAATATATTATGTTGTGAATGATTGCCCT # Right flank : TTAGCAGTTTTGTCAGCTATTCATATATAAAATAAAAATCTTTTGAAGATTTAGACTTAAACATTTAGTTTATTTTTTTAAAAGTCTCAGAGTTTTAAAATACAAAGTAGCAAATAAAACAAGCACTGGGATAATTTCCAATCTACCAATCCACATTGCTATAATTCCAGCTATTTTTCCAATTACTGGAGTTTTTAAAGTAACTACCCCTAAAGATATGCCTATATTTGAGGTAAAAGAAACAGCATCAAATATTGAATCGTAAGGGTTATAACCTAAAGCTATAAATATTAAAGCTGTTAAGAACGAAGATAAACAGTATAAAAAGAATACAACAAATGCTTCCCTAATTATTCTATAATTTAAGTCCATATCATCAAGATGTTCATGAATCACTGCTGATTTTGGATAAATAATTTCTTTTATTTCATATAAAAGTGCCTTCAGTATAACTAAAAATCTAATTATCTTAACCCCTCCAGTTGTTGTCCCTGCCCCTC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTGGAGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 16 1570374-1570894 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1570374 30 100.0 45 .............................. TGCTGTAAGCACATCTGGACTAGAAAAGTCAGAATTTTTAACCTA 1570449 30 100.0 39 .............................. TGTTTTTATTATCTTAATTTTTTTTCTTAAAATCAGACC 1570518 30 100.0 36 .............................. CATAAGCACTTTTTTAGCTCTTTTACTTCATTTTCT 1570584 30 100.0 41 .............................. TTTTTTGGTGGGGAATATGGAAATTGACAATAACACAATAA 1570655 30 100.0 39 .............................. CGAAATAAACCAATGTTTAACTTGTGGCTGTTTTAAGAA 1570724 30 100.0 43 .............................. TGAAAATAAATAAACCCTCCAATGCCAAACCAAAATTTTTGCA 1570797 29 76.7 40 A.......A.....GA..C.-.T....... CTGGAACAATCCGTTTAAAACTTCATACTCTTCTTTTGTG 1570866 29 83.3 0 ..............GA..C.-.A....... | ========== ====== ====== ====== ============================== ============================================= ================== 8 30 95.0 41 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Left flank : TCTAAGATTCTATTAATATGCTAAAATAATTTATTTTTTGCGTCATTATATATTTATATGAGTTCGTAGATATTATATTTTAGAATTTTATTATTTGGGTTTTAGGATTTTTGATTTTGTTGTTTGGTTAATGGATTGTCTTGTTGAATATGTTTGAAATTTGAAAATAAGAGTATTTAGAAGTTATTAATTAGTTCAAAGGATTTTTATTTAATTTCTAAGGGTTTGCTGGTTTGATTATTTAGAATATTTGAGTTTATTGAATTATTCAGATTTTTAAAAATTAAGATTAATTAGGAAAGGAAATAAGATTTCTCTAACAGACAAGTTAAATTTTTGGATTTAAAAAGATAAAAATGCTTAGTTTTAGTAAAGAGATAAAATTTTAAATACTAAAAGGTTTATATTGTAAGATGGTTATTTATCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGATGAAGTATATTATGTTGTGAATGATTGCCCT # Right flank : ACACGAAATACCATTTTCAGATACGATTTTTTAGTTAAACCGAAATCCTTGAAAAATAGAAATTATTGAAAATAGCATTACAATAATAATTATTTTATTTGAAAATTTTAAAAATAAATTGCTTTATTCTTTATACCACTCATAAAACTTATTTTCTATAAACTCCCTTATTTTCGTTGGTTCCAAATCATTAACTATACTATAAACTGCTATTCCTCCAGCCCCTACTCCTTCTTTTACTGAACCTTTGCAATAATTTTTTAATCCCTCAATCTTTGCTTTTTCAAAATAAAACTTAGATGCTAAAACTGGAACATTTCCTATCTGCTCAACTATTCCCTTTAAATCTCCTTTTTTATCATTTAAAACAAATTCAGTTGTTCCTATGGCTATTAAGTTTTTATCTAAAACCTTTTTGTTAATCTCTTTTATAACTGCTAAGACAGCACTCATCTGTGTTCCTCCAGCTAAAATAACTGGCTTATTTCTTTCAGCAAAAC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTGGAGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 17 1575519-1576382 **** Predicted by CRISPRDetect 2.4 *** >NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1575519 30 100.0 38 .............................. CGTAAATGGTTCGTCTTTATTGACTAAAAACACAGTTT 1575587 30 100.0 35 .............................. TGGGAAATATAAGTCAGAGATTGATGCTTTGGCAG 1575652 30 100.0 43 .............................. AAAAGATGTTGAGAGATGCATTTATTCATAAGAAATTTATTAG 1575725 30 100.0 36 .............................. TCCTTATGAAGTATTTAACTATGACGACATGAAGTT 1575791 30 100.0 39 .............................. AAACTACCGTCTGCACAAACAGCTACCATTAATCTTAAT 1575860 30 100.0 43 .............................. GATATTTCAGCAGATGTTTATCTGCTTCATTTAATTGAACCTC 1575933 30 100.0 43 .............................. TGGAGGGATTTTCATTTTTTAAATTTGATAATGTATTTGAAGA 1576006 30 100.0 35 .............................. AGTTTTCACCCCAAAAAACACTATTGTCCTTTCTT 1576071 30 100.0 42 .............................. TTTAATTAAGCTTAGATAATCTTGAATATTTTTTCTTGTAAA 1576143 30 96.7 41 ........C..................... ACACATATTGATAAGGTAGAAGTATCAGTAAATGGACATTT 1576214 30 100.0 38 .............................. CGCAATCATTAATAAATCCCAATACATCGATACAAAAA 1576282 30 100.0 42 .............................. AATTGTAATATAATCATCGAAACTCCAACCATAATCCCTATA 1576354 29 76.7 0 ........C.....AA.....G..-A...C | ========== ====== ====== ====== ============================== =========================================== ================== 13 30 98.0 40 ATTAAAATAAGACCGTTTCGGAATGGAAAT # Left flank : CATATCTACAATTCTACTAAAAAATAATTTAATTTTTTGTGTTACATATTTATATGGGTTCCGTAGATATTATATTTTAGAATTTTACTATTAAGGTTTTTATGGGATTTTCAATTTTGTTAATTGATTTATTGATTGTCTTGTTGTATAAGTTTGGAATTTAGAAATGAGAGTATTTAGGAATTATTTATTTATTTAGAGGTTTTAAATTTAATTTCTAAGGGTTAGCTGGTTTGATTATTTAGAATATTTGAGTTTATTGAATTATTCAGATTTTTAAAAATTAGGATTAATTAGGCAAGTAAATAAAATTTCTCTAACAAATAAGTTAAATTTTTGGATTTAAAAAGATAAAAATACTCTGTTTTATTATGGAAAGAAAGATTTAAATACTAAAGGGTTTATATTATGGAGTAGTTACTTACCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTGGGAGAGTTGAAGTATATTATGTTGTGAATGATTGCCCT # Right flank : CACAAAAATAATATTATTTTCTTTTTCTTCATTATATTTATATATTTAAATCTATAAATTACAAAAACTTTTTATAACATTCTTAATACAGGACTTTCACAGTCTATATATTGAGTTTGGAATTTTGATGCCAAAGGCATCTTTTTACATTAAATAATATCTTATCCTCTGTGAAAGTCCTGTAATATTTCAATAACAACCACAAAGCCAGAAAAGAGGGATATAGTGTCAAATGAAGATTTAAAATTAAAAGTAGCTAAGGAAGCAGTGAAGTTAGTTAAAGATGGAATGGTTATTGGATTAGGAACCGGTTCAACAGCAGCTTTATTCATCAGAGAACTTGGAAATAGAATTAGAGAAGAGGAGCTAACAGTCTTCGGAATTCCAACATCATTTGAAGCTAAAATGCTGGCTATGCAGTATGAAATTCCATTAGTTACATTAGATGAGTACGATGTTGATATTGCCTTTGATGGAGCTGATGAAGTTGAGGAAACAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATAAGACCGTTTCGGAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //