Array 1 1079-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOL01000112.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00323 CFSAN00323_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1078 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 1017 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 956 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 895 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 834 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 773 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 712 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 651 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 590 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 529 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 468 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 407 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 346 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 285 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 224 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 163 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 102 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 41 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GCGTTCATCGGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30835-30214 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOL01000050.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00323 CFSAN00323_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 30834 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30773 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30670 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30609 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30548 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30487 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30426 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30365 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30304 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30243 29 96.6 0 A............................ | A [30216] ========== ====== ====== ====== ============================= ========================================================================== ================== 10 29 99.3 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTACCGGCACTTTCTG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 570-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOL01000114.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00323 CFSAN00323_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 569 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 508 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 447 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 386 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 319 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 258 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 197 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 136 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 75 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GCCGCTGACGCACTGGATCAACCTGACGCAACGGTGTTCCCCGCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //