Array 1 621218-620919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 621217 32 100.0 34 ................................ TTAAAATGTGGCGTCCTAGCGGCGCCTTATACAC 621151 32 100.0 36 ................................ GCTAGTTTAGCTCGCTCAGACAGAGATAGAAATACG 621083 32 100.0 35 ................................ GAATGCTGAAAAGTAGTAATTCCAAGCGGGTAATC 621016 32 96.9 33 ........................G....... TCCTTCTGAGGCTGAACAGCTGGCGTCTGCCAT 620951 32 93.8 0 ..............................TC | A [620923] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.1 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGACAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCGCACATGAAATCCCAGGGAGGTTCGCACCAAAATGCACTTTTAATATGTAATAATGTGTGTAAAAATGAATTAATGTGAGTGGGACCACATGGTAAAATAGGAGAGAAAAACGAAATTCACGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAATTCGCT # Right flank : GCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCACCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGTTTGTTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATCACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGATCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCATTAGAGGATTCG # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 685969-685804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 685968 32 100.0 34 ................................ AGCAGGGAGAACCTTTTCAATCGATATTCCCATA 685902 32 100.0 35 ................................ ATAATATATTCCCACCAATCTGTATCATTGACTAT 685835 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TATTTTTCCACTTGTCAAACGATAAACGGAATCGTTCAGGAAACCTATTTGCTTCGCAATCGTAGCAACTAAGAAGATAGAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCACCGGAAGAAGCGGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTTTTAATCAGGCGAGAATCAGGCCCAAATTCACACATATATCAAACAATAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGAAATGGTTAGAGGAGCTCCATCAATCGTTTCCTTGTGAGCATTCAGTATGATTAAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTGTCTGTATGCCATGATAGAATAAAAGAAAGGAGCGGCATTTTCCTATACTTGTTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : CAACAACAGGTCAAGTTGGGCATGGTACTGTCTTTGTCGCACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGTGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGGAGAACCCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGCAGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGAGGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATAAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 699102-698604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 699101 32 93.8 34 .........T.A.................... GATGACAGGGTTTAATGATACAAATATCCTCCCT 699035 32 93.8 35 .........T.A.................... ACCGAACTCGGTAAAGAATGAAACAATCGCTTTTC 698968 32 100.0 34 ................................ AACGATTTCCTCTTGATTGATTTTAATAATCATT 698902 32 100.0 34 ................................ TTCGCTCACGTCAGGCTTCAATGATTTTGACTGG 698836 32 100.0 34 ................................ ATTAAACAATATATCGTCGGAAATAATGCGGGTT 698770 32 100.0 37 ................................ TCAGCGCAAGTCTTTCCGTAGCCCCTACGCTGGCTAA 698701 32 100.0 34 ................................ AGGATTACCAGTCTACAAAAGATTGGACGCTTGA 698635 32 84.4 0 ........TT.A........A..........C | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 96.5 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TATCTCTCCTTTCAAATCTTAACATTCTAATGAATTTTAGCAGCAGTCAATGAGAATGAATAGTCTATAATAACTTGTGTCTATATGCTATAATTAATCTAGGGAAAGTGTAACTTTTTTAACATAGCTAACCGTACTGTAAACGGGTGACCCGTTTCAACCTCTAGAAAGCAATTCATACCTCCTTTCGTCCACAACGAATATCGTTAAAACCCGATTTTAAGAACAGCCTTGATGAACAAGCGCATGTAAAAGAGCAGAAGAGAATGACATTGATTGCCCTTCTTAGTATTTAAAAGAATAGAAGTGGTGTTTTTTTGGTGCGAACCCTAAGCGCACATAAAACCCCTAGATCACCCGCACCAAAAAAGAGCCTAATTATGAAAAAGCATGTGTAAAAATGGTGAAATGTTGTCTGTGTGCCATGATAGAATAAAGGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTACTTCCAATAATTACGGGGATTTCGCT # Right flank : ACGCTGCTGCCGTAGCAAATGAATTTAGCTCAATGGAAGAAAGAGGACGAATTATCAATTTTTTCACTTCTGTCGTCGGTCAAATGTTTCCAACGTATAGTGGGTACGCTGATTGGCTTGAATGCTGGCGCCTTATTGTTTGTTGTTGTCGCGTTTACGTTTCTGGCGGTTTCGTCATTCCTGTTTGGCTGCAACCAGCGATAGTCATTTCCGACAAGGGCACATCTTCTGGTTATGGCGTTTTTATTTTAAAATCGACACCGAGGCACTGGTTTTTACCGCTTGGCGCTAACCAATGCTGACGCCTTTCATTCAATAAAAATCATCTTTAGTAAAGCCATTAATCAAATCGATCAATCTAGATAAATGGATTGTATGCGCGTCTTCTTTACGGGTACAAAGGTAAACAGGCCGTTTAATCTCGATATCTTTTACAAGAACTTTGCCTAGTTCATTTCGGTGAATATGGTCTTTGACGGCAAGTGAGGGGGCAAGCATCG # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 703451-703019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 703450 32 100.0 35 ................................ CAAAAAGGATCAGCGATGAAGCGTTTTGCCAGATA 703383 32 100.0 34 ................................ AACTAGCAAGGAAAAATGCAAAATCTCAATTACT 703317 32 100.0 34 ................................ TGTCTCTGACATTACTACCCCCCTGTTAGCTAGG 703251 32 100.0 34 ................................ ATACGCCCTTGGCGCGGCATGGCGCTTTTTGTTA 703185 32 96.9 36 ........C....................... CATTTTAGGAGTTGACGCAGCGAACATCCGTTTATC 703117 32 96.9 33 ............A................... CCGTCTACGCACCCAATCACCAGGGTCGCCATC G,TC [703091,703108] 703049 31 75.0 0 ...A....CC.G.C....A.....G..-.... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.5 34 GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAATATCCGAACCAAACCGATGCATGGAGTCTTGTTCATTTGGGGAAGGTCAGTTCATGGCTTTTATTAGTGATTGTTAGTTTTCTGATCGTCGCGACATTAAAACAGGTGAAGGGGAAAAGGCGCACTGGAGTAGATGCTAGTCAATCTTTATAAAAAGCAGTGCTTTAGTTTAGTAAGGAACTTTGCGTTTTTACGATTCTTATTATTTTGCCAGTGCAAACAGGTGCTTTTTTGAAGAAACCTATAGATGGCACAAGTATAATAGTAGTAAAGTTGAGGAGGCAACATTTACTTCGTATTATACGCAGTTCTTTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAATTATGAAAAAATATGTATGAAAATGGCGAAATGTTGCTCGTTGTCCATGATATGATAAGTGAAAGAGCGGTTTTTACCTATTATTGATTGTTCTTCTTCCAATAATTAGGGGAATTTCGCA # Right flank : AAAGGCGGGAGTAAGCCCCTCGCGCTTGCTCCCTTGTCACACGAGTGCGTCGCTAAGTTTCTAGCTATAGAATTCCGACCCCAGCTTGCATAAAAAATCCCCTTTTCTCGGAATCTCCCCAATTTCCCGCGCCCCAAAAATGTAGCCACATTTTTATTGCTCATAAAATTTTCCTAAATGGTAATATGTTTAAAAAGACTAGATACGGGGGGAGCGAAATTGGAAATTCGTACAGTGAAAGACTCTGACTACTTATGTAATTTCTCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCTGATAAGTTGCCCAAATTATTTTTCGACCACTTTAGCAATACAAGTTTCATTGCTGAAAAGGATGAAAAACTTATTGGCTTTCTAATAGGATTCCTTTCTCAATCACATCAAAAAGTAGCCTATATACATTTTGTTGGAGTTCACCCTGATTACAGAAAGCAAAGCGTTGGCAAACATTTATACAATCAATTTTTTC # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 707760-707462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 707759 32 100.0 35 ................................ CCATCTTACAATTACCGCGTTTCTTTTGTTGGACG 707692 32 100.0 36 ................................ TACCAGTATTCAAACATAGTGCCATCACGAACAATT 707624 32 100.0 33 ................................ TCGAACAGTTGTTACATCAAAACGGTGTGGAGC 707559 32 100.0 34 ................................ TCGCGTTGCTCTTGTCTACAATTTGCCGCCTCAT 707493 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : AAAGCAAAAGAAGCAGCGAAAGAAATGGCGAAATCAAAAATTCGCATGGTTGGCAGTGAAAACACGGTTGTGCCAGCGTTTGCGTGAAAAGTGTGAGCCCGGACTGTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTTTTCATTAATTGGGGAGGAAGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACCTCCTTACGCAAATAGAAGCTTTTTAATGGAAAGAGTAAAGTAGAGATAGACACAATTGAGCCAAGGAGATTAACTTTACAATTATTCATCTTTTGAGCCGTGATTCTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGGACTTTAATGTGGGATAATATGTGGAAAAGTGGCAAAATGTTGTTGGTGTCCCATGGTATTATATAGAAGAAGAGCGGCTTTTCTCTATTATTTATTAATGGGTTTCCAATAAATAGGGGAATATCGCT # Right flank : TTTACCCCATACGACAACGCTAGTGAAGCTTGGAATTGGTTACTGTCCAGTTCCCTAATTTAGGGCTCCATTAGAATTAGGGGAAAAAGTAATGCAGAAATTAATAAAGGAACGAAAACAAGAAAAAGTTTATAGTTTAAAAAATAAAAAACGCACTTCTTGAAAAGTGCGTCTAAAAAACAAAGATATTTATTTTTCCTCAAGGGTTGTAAAAAAAATTTTCTCTTAGATTAATGAACGGTATCTCCTTTATCTCGAGTTTCAATTGTCGGAGAATCACGATCAATGACGACATTTGTTTGGAGGGTAAAAGAAACACACAATAATGCTGCAAATAGGGAAAACCATATTTTTTTCAAGGTTGATCGACTCCTATGTTTGATAGATTTTGGCGTGCACGATAGGCGACGTTTAAATACTTCCACGCTAGTTCTTGTTCTCCTTTTTGTTTAAAAAACGTTGCTGCTTCCTCTGCGATCTCCTCAATTTCAAAGTTCATA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 714711-714347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 714710 32 100.0 35 ................................ ACACACAGCCCATTGTCTCTTCGTTTCACAGCTTC 714643 32 100.0 34 ................................ AATCACCTAATTTCTGTTGCCTTATAATCTCTTG 714577 32 100.0 34 ................................ AACCATGTGTTTGTAATCGGCAGAACTAATACCG 714511 32 100.0 35 ................................ CGTCCGGGGCATATAAATTGAATTCTTGGACTAGG 714444 32 96.9 34 ...........C.................... TTGCATTTCCCGTAAACGGGCAAAAAAAGGCGGC 714378 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATTTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGCCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGATAAGGTATTTCGTGGATCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAATGCTTTCTAACCTATTATTTTGGTGCGAACCCTAAGCGAACATAAAATTCCTGGATCACCCGCACCAAAAAAGAGCCTAAATATGAAATAATATGTGTAATAATGTATAAATCTCGTTTACGTCCTATGATATGATAGAAGAAAAGGGTGATTTTTCCCTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : CCATAGTCTTTGGATAGGGCATCGATAGGGTTAGCCGGAGAACTCTATGTTTATGCCATTTCCATTAGGCCACACGGCAGTTTTCTTTTGTGGGTTGTGAAAATAGTGTCCACGTAAAACGAGAGCCAGGAGTTTTCCTCCTGGCTCTGTCTGCTTTTTTCAAGAATTGCTTTGCTAAAATGCATGACTAAACAGCTGAACCAATCCGTTCGATGTGGATTTTTTGCTGATACTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTTGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAGTTAGGGTAAGGGCTGTTTTTTAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 722228-721666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 722227 32 93.8 34 ..........AT.................... CCTACAAGGGCAACAATAGTTTCACTATGATAAT 722161 32 100.0 35 ................................ CTACTTTGGTCATTTATAATCCCTACCTGCCAAGG 722094 32 100.0 34 ................................ AAAAGGATTCCTCCATTCTCTGCATAAAATCTTC 722028 32 100.0 35 ................................ GTCGAGATTATATAGGTATCGTCCAATTCCAAATT 721961 32 100.0 34 ................................ GATGACACGGGCCTGAATTTCGATTGGCCGAGAA 721895 32 100.0 33 ................................ ACTTTTGTTGCGTTGCGCTCTTTGATTACTTCG 721830 32 100.0 34 ................................ AGTTACAGCAACTTATAGCTTCACTCGGTCCAAT 721764 32 93.8 35 ..........AT.................... CAAACGTGCATCTTCTTGAGTTTTCAAATTGCTAC 721697 31 93.8 0 ............-.......T........... | A [721688] ========== ====== ====== ====== ================================ =================================== ================== 9 32 97.9 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : CGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTGTTTTAGGTGTTCGTGGTATTAAAATGGGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTGGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATCACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGTTCATGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTGTATTATCTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCGACATGAATCGACGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCATCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGACTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 734784-733893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 734783 32 100.0 33 ................................ ACAAAGTGCCGTCGTTTCGCTAACATCGCCGCC 734718 32 100.0 36 ................................ CCTATGGTTTTACAAGAATTAGGTGTGTCAGCTGAG 734650 32 100.0 33 ................................ TACTTCCTCCGTAGTCGTGTCGCCGGCAGCCCG 734585 32 100.0 35 ................................ CACCCTTTAGCTTTTAATAGTCCCATCATTGCCAC 734518 32 100.0 35 ................................ ACCTTTACAATATAGTCCATGACATTCAAGACGTC 734451 32 100.0 33 ................................ AAACCCCATATCAGAAAAGTGATTGAGATAAAT 734386 32 100.0 34 ................................ TAGAATATCGCGAGAAATCGAAGTTGCTAGGCAC 734320 32 100.0 33 ................................ AGCGCTGGCCGTACGAGCGTATCCAATGCCAGT 734255 32 100.0 35 ................................ AAACAGTGTCGGATTTAAATCTTGTTGGAAATTCG 734188 32 100.0 33 ................................ GGCGACCCAATCGTGGAGTTCCGCCTCAGTGAC 734123 32 100.0 35 ................................ TTTGAAAAACGTAGTCAATGCATCCTTTAAGGTTA 734056 32 100.0 35 ................................ TATTAAGTTTTCGCGGTACAAGGTTATTCCTCCTT 733989 32 100.0 33 ................................ ATCAGGGTAAGTAGCTGTTCTTTTTTCATTTTT 733924 32 90.6 0 G..........................A...A | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.3 34 ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : AACTGTATAGGTAAATGGAAACACCAAGATACAGAGGAACAGCGTGATAATAGAGTTGTAGAAACAACAGATCAAAGGGATGAAATTTTGCAAATTGCTACCTTTTGTCAGGAAATAAAAGACATAATTTCATATCCAAAAGGTAAAGTGGAGGGTGCTGGGAAAAATTCGGAGGCATCTCATCAATGGTTCACATTAAATAAAAGAAATGAGAAGCGAATCCTACCAACGATTCAAGAAGAACTATTTAAAAAAGATAACTCTCATTTGAAAGAACTATATGAAATAAAAAATAAACGCTAACAAGAAGCAAATATGTTGGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTAAAATATGAAATAATATGTGTAAAAGTGTTGAAATGTTGTTGGTTTCCCATGATATGATAAAGAAAAGCAGCGGCTTTTCCCTATTATTTATTGTTTTGCTTCAAAAAATAGGGGGATTTCGCT # Right flank : TATATTTAGATTTGATAAAATGTAAGTCCTGTTTTATTAAAAAAATGCCTGCAACTAAACAGCCATTACTCAACGATCCGACAGTAATTGTATTCCAGTAAAGTCTAATAAAAAGAATAAAAAGGCCTTGGCACAGATGCCAAGGCTACAATTTTTAGAATGGTATATCACTTTTGCCTGTTAGTTTAAAGGTACATTAACTTCGCTCCGCAGTTGAATCAAAATTTGACGAGGATTAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAATCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGAGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 745737-745507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 745736 32 100.0 33 ................................ GGTAATTTTCCGACCACTGTTATGCGTACCGTA 745671 32 100.0 34 ................................ CTCAATGCCGTCCATGGAAGGGTCTGCTGGTTCG 745605 32 100.0 35 ................................ TTTAAAGTACGGTTTGATGAAAGAGGAAAGCCGAT 745538 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : GTATCCCAATTATCGCGATTCAAATACTGACGATTATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAAAAATAGGAAGGAGCCATGTAAAGCCTGCCGGCTACTTTTGCTGGCAGGCTTAAGCTTTGTATTTTTGGGAAAACTCGTATTTATGAGTGGCTGCTGGGATAGTGTTTGTGGAATTGGCGATTGCTTGCAAAGAAAGGCATCGATATTTAACCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCTTTTATAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGGAAGTGTGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAAAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGACT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCTGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACTTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAAAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCATGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTGACGTTTGGGCTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGAGTTAGTGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCTTGCAGGGAACCGAGCTATTGTTTGACTGAAGGTGTTACAGCACCTTCAGTCTTTTTACTTTAGTCATT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 799420-799187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 799419 32 100.0 34 ................................ ATTTTGAAATTGGAAATCCAATAAGTTCATTCTT 799353 32 96.9 36 ..........T..................... TTCGTGAAACCTCACGTCAGCATTCACTACAAAACC 799285 32 100.0 35 ................................ AATAAATGGTCTGTAGATGATCTGTACACATCTAT 799218 32 75.0 0 .G........TC..........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.0 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAAATACCCCCTTCCGAGCTATATAATCAATGTTTAGGATGTCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCCGATGCTCACTTTTCTCGAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGGGTTACTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : AAGACAAGCCCCACCGCTTGCTACAACAAGTCTTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGCTAGAGCTCTTGTTACAGAAGGTAACTGATCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCATAATGCCGCGGTAGCAAAAGATTTAGAAGACCAAAAAGAGCATAATGCTATGGCTGCAAAAGATATAAAAGAACAAAAAGGGCATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCTATAATGCAGCATTCGCCAAAGACTTAAAAGAACAAAAAACGCAAGTTGCTGGGATCACAAAAGAACTAAAAGAGCAAAAAGAGCACTACTTGGCCATGGCACAAGATATCAAGGAATTAAAAGAAGATCAGCTCAT # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 813582-813218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWJ010000004.1 Alkalihalobacillus clausii strain ZBDJF4 contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 813581 32 100.0 34 ................................ ATGTCAGACATGGCCTGATTGGCAAGCGTATATC 813515 32 100.0 36 ................................ TTTGGGCTCCTAATAACGTTTTATACATATTCTCAC 813447 32 100.0 33 ................................ GATCATCGTTTCCCCTCCTATCTATAATCCGCA 813382 32 100.0 35 ................................ TGAAATTGCGCCCTCCTGCGTAAACAGTGGGGCAA 813315 32 96.9 34 ..........T..................... CCCATAATCGTGTCTTTAGCATCGCCATATAGTG 813249 32 87.5 0 .............C........C.......TC | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.4 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAACTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAACCGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAGTCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTCGATCACCCGCACCAAAAATGGCCTTATATATGTGTTAAAATGTACAAAGATGTAATAATATGGTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCATTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : TTTTTAACAGATGCTACCGATTCCGCATCTAAAGGTCACACGTGTGTAAGTAGAGTTTGGCCCCCACTCTTTTTCACGCAAAAACGTCGCACTCTATTTTGAGTGGAACGATGATCACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //