Array 1 1456447-1455706 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007684.1 Listeria monocytogenes strain L2626 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1456446 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 1456381 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 1456316 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 1456252 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 1456186 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 1456122 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 1456059 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 1455995 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 1455930 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 1455866 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 1455800 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [1455776] 1455734 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2644453-2642236 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007684.1 Listeria monocytogenes strain L2626 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2644452 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2644386 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2644320 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2644254 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2644188 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2644121 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2644055 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2643989 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2643923 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2643857 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2643791 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2643725 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 2643659 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2643593 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2643527 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2643461 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2643395 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2643329 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2643263 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2643197 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2643131 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2643065 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2642998 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2642932 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2642866 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2642799 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2642733 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2642667 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2642601 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2642535 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2642469 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2642403 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2642337 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2642271 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //