Array 1 250097-252644 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMDK01000019.1 Pelomonas sp. Root1237 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 250097 36 100.0 30 .................................... CGCATCAACGTCTTCCTACATGACGGCGGG 250163 36 100.0 30 .................................... GGGGACGAAGTTGCACCGCGCCAGCGCGCG 250229 36 100.0 30 .................................... CGCGGGCACCGGCGGCGCGCGGGGTCTCGT 250295 36 100.0 30 .................................... GCTGGACACCAACACCAACGCCCTGGCCTC 250361 36 100.0 30 .................................... CCCTGTCGATGACGATGGCGCGGTAATTCG 250427 36 100.0 30 .................................... AACCGGGATCAGCAACCAGACCGCCACCGG 250493 36 100.0 30 .................................... CCACGTCTGCCACTCGCATGAACTGCGCTG 250559 36 100.0 30 .................................... CGACGGCCGCGAGGACCTCACCGGCAGCGA 250625 36 100.0 30 .................................... CAGCCTGGTGATGTCGCGCGGCGTGATCCA 250691 36 100.0 30 .................................... GGCAGTCGCCCGCGTCGAAGCGCCAGGCGG 250757 36 100.0 30 .................................... TCACGGTCTTGGCATCGACGTTGATGTGCT 250823 36 100.0 30 .................................... CTTGATGGTCTGCGGGTTGTAGCCGCGCTC 250889 36 100.0 30 .................................... GAACGGCTACGAGGCCATGTGCGTGGTCGC 250955 36 100.0 30 .................................... CTTCACCACCTACGCCCCCTGGCTCATGTC 251021 36 100.0 31 .................................... TGAATGAACTTGCCGATGCCGGCGACTTCGA 251088 36 100.0 30 .................................... CGTCGCCGAGCGCGTTCCATTGGATGTTGA 251154 36 100.0 30 .................................... GCATCGACGTGTTCATGTTGGGCATGACCA 251220 36 100.0 30 .................................... CGCGGCCTCGGCCATCATGTCTCTGTCGCC 251286 36 100.0 30 .................................... GGTGGTGCGTGCCGCGGTGCTGCTGATACT 251352 36 100.0 30 .................................... GGATCTGCAGGACACCCACTTGATCAATGA 251418 36 100.0 30 .................................... GACCGCCCAGAACGCCAGCGCGCAGAACCA 251484 36 100.0 30 .................................... TCCAGTGGCCTGTGGCCGATACGCCGCCGA 251550 36 100.0 31 .................................... TCCAGCCGGCCAACTGCACCTGGTGATCCAG 251617 36 100.0 30 .................................... CCCAGACCGTGTAGCCGCCGACGGAACGCG 251683 36 100.0 30 .................................... CGCATTGCCAGTCGGCAGCAGAACGCCATT 251749 36 100.0 30 .................................... GGCCGATACCTGCGTCAGCAAGGATTGCTA 251815 36 100.0 30 .................................... CTCGCCGTGTCGCTCGAGCCTGTTGGTCAA 251881 36 100.0 30 .................................... CTGCGAGCCAGGCCAGTACGGCGCGTATCT 251947 36 100.0 30 .................................... CCGAATTGCTGGTTGCATCGAAGATCGTGA 252013 36 100.0 30 .................................... CCTGGAGCTGCGCGCGCATCACCTGGGCCT 252079 36 100.0 31 .................................... CGGCTACAGCGACGAGCCCGACTGCGTGCAC 252146 36 100.0 30 .................................... TCCAGTGGCCGGTAGCGGTCACGCCGCCGA 252212 36 100.0 30 .................................... CCTTGGACCCCGCGGTCAGCACCTTGTAGG 252278 36 100.0 30 .................................... ACGGGTTCGTCGGCAGTGAGCCAGAATGGC 252344 36 100.0 31 .................................... CGCTCGCGCAGCGCGGCCTCAACCTCACACC 252411 36 100.0 30 .................................... CCTTTGGCAGGAACAGTACGGCTCGGCCGT 252477 36 100.0 30 .................................... CGGCTGGATCGGCGTTGGCGGCTTCGCCTC 252543 36 100.0 30 .................................... ACCAACAAGGAGCTAAGGGGCAAGGCGATC 252609 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 GTTCCGGCCAGAGCGCATTTCCCAGCGATCTAGACT # Left flank : GTCGGTGCCGAATTCGTAGAAGTTGTTGTACGAGGTTGCATCGGCGTAGCTGGTGACTTTCTCCATCACCATCGCACTGGCCACGGCCGAGCGGGCGCCCGGCAGCTTGGGCAGCTTGCCGCCACCTGGCGCGGCCTGGGCCTGGGCCAGGGCCAGCGGTGACGCGGTTGCCAGGCCAAGGCCGGCCAGGGCAGTGCGGCGGTTCAGGTAGACCCGGCGGGGCGTGATCTCGCTGGACAGGGGCTCGTGAAGGGCGGTCGTTCGAATCAGCATGAGGGGCTCTCGGGTCTGTGGGCTGAGGCTGGGTCGGGCCAGGACGGGCGCAACTTACACCGTCGGATGAAAGGCTGCCCTACGTCATGGCAAATCCCGCGCCCTCCACCGGCGCCGGCAAAAGGCGTGTCCTGGGCTTTGTGTTCTCGACGGTCGCTGATAAGTCGGCCTGTTCATGTTGCTTTATCGGCGTCAGGAGCGTGCGCCTTGGCGCGTTTGGTTCTGCG # Right flank : TCGGCCGGCAACAACCCCTTGATTCGTCAAGGGGTTTTTGCCTTCTGGACGGGCCGAAAACGTGCGCATGGCTAGAACAGGTCGAATTGGTCGGGCGTTTTTTTGGCCGGCTGCTTGGCCTTGCCCTGGTAGCTGATGATGCGTTCGTACTGCTTGTCGGTGAACTGCAGGATATTGACCTTGCCGCCGGCCGGCAATGCCCCTTCGACCCGTTTGCAGTAGGTCTCTACCTGGGTGCCGCTGGTGCAAAAGCGCATGTAGACGCTGAACTGGCTCATCTCGAAGCCCATATCCAGCAATGCGTTGCGAAACTCGGTGGCTGCGCGACGCTCGGCCTTCTCGACCACCGGCAGATCGAACATCACCACCATCCACATCAGCCGGTATCCCGTAAGCATGGGGCGCGGCTCATTCGTCGGCCTGCAGCGCTGACGCCAGCGACAGCGGCAGGCCGGGCAGGGGCAGGTCCAACTTGTCCCGCTCGCCCAGGTACACCTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGAGCGCATTTCCCAGCGATCTAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //