Array 1 241869-241572 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807280.1 Neisseria sp. HMSC071A01 Scaffold354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 241868 33 93.9 34 AA............................... GAGACTACGGCGAATATCCAAGTAGCCGAGAACG 241801 33 100.0 32 ................................. GGCATGGTTGAGTATGAAGACAGTGTTACTGG 241736 33 97.0 33 .A............................... CAGCAAAACCCTCTACTCGCTGCCTTTACCGGC 241670 33 97.0 33 C................................ CAATCGCCACGCAACATCATGACATTGCCCACG 241604 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 5 33 97.6 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCTGTGTGTTGAAACATATGCGCGCGCAAGCCAGCCCTGCCATAAGTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGTCTACAAGGGCTTCGGTAATCAGTACCACCAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCCTTTATGGGCTATAAGTTGCTCACTGGCTTAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCGCGCCGACGTTGAAGCGTTGGTGAATCATACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTAGCCAAGTATTGAGTAACGTCAGTAATATACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTCGATAACCTCAGCACGAATACCGCCTTC # Right flank : TCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGAAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 242386-242093 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807280.1 Neisseria sp. HMSC071A01 Scaffold354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 242385 32 93.8 32 NN.............................. ATATGCGCGCGCAAGCCAGCCCTGCCATAAGT 242321 32 100.0 34 ................................ AGGTCTACAAGGGCTTCGGTAATCAGTACCACCA 242255 32 100.0 34 ................................ TTCCTTTATGGGCTATAAGTTGCTCACTGGCTTA 242189 32 100.0 33 ................................ AATCGCGCCGACGTTGAAGCGTTGGTGAATCAT 242124 32 96.9 0 A............................... | ========== ====== ====== ====== ================================ ================================== ================== 5 32 98.1 34 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCGGTCGAGGCCATTTGTGTCTCGATGGCGAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCGACTTTTTCAGTTTTCGGACGCAGGTTGATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTAGTTACCCCTTTAAACAGTAGGCGCGTGCAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGATTTAAGACCGCCCCAGTCAGGATCGCCATCTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTAGCCAAGTATTGAGTAACGTCAGTAATATACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTCGATAACCTCAGCACGAATACCGCCTTCAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGACTACGGCGAATATCCAAGTAGCCGAGAACGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCATGGTTGAGTATGAAGACAGTGTTACTGGTACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAAAACCCTCTACTCGCTGCCTTTACCGGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAATCGCCACGCAACATCATGACATTGCCCACGTCCAGCCGCCTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 3 242711-242484 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807280.1 Neisseria sp. HMSC071A01 Scaffold354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 242710 33 97.0 32 .G............................... GCCGACTTTTTCAGTTTTCGGACGCAGGTTGA 242645 33 93.9 32 TT............................... ATTAGTTACCCCTTTAAACAGTAGGCGCGTGC 242580 33 100.0 31 ................................. GATTTAAGACCGCCCCAGTCAGGATCGCCAT 242516 33 93.9 0 CT............................... | ========== ====== ====== ====== ================================= ================================ ================== 4 33 96.2 32 AACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCACATCTTGATACCACTGCCCAAGTTGAGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATGTGTCTTGAATCCATTGGGCAACCGCTTCAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCACGTTATAGCCGTAGCTGTTGCCGATGGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCGGTCGAGGCCATTTGTGTCTCGATGGCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATATGCGCGCGCAAGCCAGCCCTGCCATAAGTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGTCTACAAGGGCTTCGGTAATCAGTACCACCAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCCTTTATGGGCTATAAGTTGCTCACTGGCTTAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCGCGCCGACGTTGAAGCGTTGGTGAATCATACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTAGCCAAGTATTGAGTAACGTCAGTAATATACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 243099-242934 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807280.1 Neisseria sp. HMSC071A01 Scaffold354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 243098 33 90.9 33 NNN.............................. AGCACATCTTGATACCACTGCCCAAGTTGAGAA 243032 33 100.0 33 ................................. CATGTGTCTTGAATCCATTGGGCAACCGCTTCA 242966 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================= ================== 3 33 96.0 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGCTGTGTGTTGAAACTAGCGTGTCATTTCGCTCCGCCTCTGTGTCGAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCCTACTCCTTTTCACGTTGCCCAAATTCATCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGATGACGACAGAAAAACCAACAGGACGAGCCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAACTCTCGATGCTAGAAGCAGACAAGTATCAACCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CATCACGTTATAGCCGTAGCTGTTGCCGATGGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCGGTCGAGGCCATTTGTGTCTCGATGGCGAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCGACTTTTTCAGTTTTCGGACGCAGGTTGATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTAGTTACCCCTTTAAACAGTAGGCGCGTGCAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGATTTAAGACCGCCCCAGTCAGGATCGCCATCTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 5 243686-243516 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807280.1 Neisseria sp. HMSC071A01 Scaffold354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 243685 34 97.1 36 .................................A ATGGTTACCACATATTTACCGGCTTGGTTGATATAG 243615 34 100.0 32 .................................. AGCGTGTCATTTCGCTCCGCCTCTGTGTCGAA 243549 34 88.2 0 G..............................NNN | ========== ====== ====== ====== ================================== ==================================== ================== 3 34 95.1 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Left flank : GTGTGTTGAAACAAAATCAACAATCGGCAGAAGTGATTTTGTCGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAGAATGCTTGAAAGCCTTGACGCAGACGACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGACTCACTTGAGAAGAAACGCAACGAGATTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTTATTGTCGTAATGTGAGTAACGCCAGTGTTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACAGGCGGTGTCTGGACGTTCACAACCGACACCGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACCAACCTTGAATCGCGGTTTATTGAAAATAAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCCTACTCCTTTTCACGTTGCCCAAATTCATCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGATGACGACAGAAAAACCAACAGGACGAGCCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAACTCTCGATGCTAGAAGCAGACAAGTATCAACCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCACATCTTGATACCACTGCCCAAGTTGAGAAACCAGCCGCCTTCGGGC # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 244141-243844 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807280.1 Neisseria sp. HMSC071A01 Scaffold354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 244140 33 100.0 32 ................................. AAAGAATGCTTGAAAGCCTTGACGCAGACGAC 244075 33 97.0 33 C................................ CTTGACTCACTTGAGAAGAAACGCAACGAGATT 244009 33 97.0 33 G................................ GTTATTGTCGTAATGTGAGTAACGCCAGTGTTT 243943 33 100.0 34 ................................. ACAGGCGGTGTCTGGACGTTCACAACCGACACCG 243876 33 93.9 0 A...............................N | ========== ====== ====== ====== ================================= ================================== ================== 5 33 97.6 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGAATTATTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGAGTTTGCCGCCAAAACGCCTTATGATATTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGACGGCTGTGTAAAGTAGCAACTGCACGGCCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAATCAACAATCGGCAGAAGTGATTTTGTCGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACCAACCTTGAATCGCGGTTTATTGAAAATAAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATGGTTACCACATATTTACCGGCTTGGTTGATATAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAGCGTGTCATTTCGCTCCGCCTCTGTGTCGAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCCTACTCCTTTTCACGTTGCCCAAATTCATCAACCAGCCGCCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 244464-244298 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807280.1 Neisseria sp. HMSC071A01 Scaffold354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 244463 35 100.0 30 ................................... GTTTGCCGCCAAAACGCCTTATGATATTGC 244398 35 100.0 31 ................................... CGGCTGTGTAAAGTAGCAACTGCACGGCCTT 244332 35 85.7 0 ..............................NNNNN | ========== ====== ====== ====== =================================== =============================== ================== 3 35 95.2 31 CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA # Left flank : GCACATGGGAATATAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAGGACGCGGAAGGACAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAATATTCAGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGAATTATTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGCT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAATCAACAATCGGCAGAAGTGATTTTGTCGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAGAATGCTTGAAAGCCTTGACGCAGACGACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGACTCACTTGAGAAGAAACGCAACGAGATTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTTATTGTCGTAATGTGAGTAACGCCAGTGTTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACAGGCGGTGTCTGGACGTTCACAACCGACACCGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //