Array 1 3231380-3233412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048813.1 Rhodococcus triatomae strain DSM 44893 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3231380 36 100.0 40 .................................... ACCTCCGTGCGGGTGGCGATGAGACATCGCACCGGGTCGA 3231456 36 100.0 36 .................................... CGTCGAGGGCCGCACCGAGGCCGACCACGGTGCCGA 3231528 36 100.0 39 .................................... CCCCAAGTCGTGCAGGGTTAAGGCCGTAGAGCCCGCACC 3231603 36 100.0 41 .................................... TCGGAATTTGCCCCCAGTGCTGCATGCGCGTGGAGGCCGAT 3231680 36 100.0 40 .................................... CGACGGGGGCGGCGGCGCCGTAGCGAAACTTGTTCTCGAC 3231756 36 100.0 39 .................................... ACCGCATGGGACGTCCACAGCGACCGCTCCGGCTGGCGT 3231831 36 100.0 35 .................................... ATCGCGCACAGGTCCAGGTTCGCGATGAACGCGAT 3231902 36 100.0 37 .................................... ACTACCAGGTGACACCCACGCAATTACGCGAACAGTC 3231975 36 100.0 39 .................................... ATGAGTCGGGCGGTCGTGCACGCGGGCAGCAGGACCGCA 3232050 36 100.0 43 .................................... GCGGAAGAGCACCGGTTCCGTGATGGCGTGTGGGGTGGCCGAA 3232129 36 100.0 36 .................................... CGCGAGAACGCCGAGGTGATGCTCGAACAACTCGTC 3232201 36 100.0 35 .................................... GTCGATCCCGCCCGCCGCGGCGAAGGCTACTTCCG 3232272 36 100.0 37 .................................... GAGATCAGCCGGGCGCTAGGTGAGTCGCTCGTCGACC 3232345 36 100.0 39 .................................... GGCTGTCCGATTCGTCTGGTATGAATCCCTCATGACTGC 3232420 36 100.0 39 .................................... TGGAGGGCAGGCCATCCTGTCCGGCAACGGCCGAATCCG 3232495 36 100.0 38 .................................... CCCGCAAGCCGCGTCGCCGGTCGCCGTCTGGTGACTGG 3232569 36 100.0 38 .................................... TGCTTCACTTCCACCAGTCCTTCCCCAGCTTCTCGGCG 3232643 36 100.0 35 .................................... GCTCGAGGCGGCGCTGCCGGAGCTCCGTGCGTCGG 3232714 36 100.0 37 .................................... TCGGACGCGATGTTGTGGACTTGGGGGCCGGCCGGGT 3232787 36 100.0 37 .................................... CCGACGCGCCGAGTGAGCTACCGCAGTAGCGATCGGC 3232860 36 100.0 38 .................................... CGGTACGCCGACGACGACAGCGAGGTTCTCTGCCCAGG 3232934 36 100.0 37 .................................... GTCAACGGAGCGTACAAGAGTAACGGCCCGGTGTTCG 3233007 36 100.0 35 .................................... CGCCACATCGCCCACACGATGAAGCCCACTGCGAT 3233078 36 100.0 39 .................................... AGCCACTACGGCAGCCGCGGAATCATCATCATGACGAGT 3233153 36 100.0 38 .................................... GAGTGGTCCGACGTCGAGGCCGAGCTCCACGCCGCCGA 3233227 36 100.0 38 .................................... CCGTACACCGACGCGGACGGCACACTCGTGCAGGAGGT 3233301 36 100.0 40 .................................... ATCCTCGAGGCAGTGGACCCGTGGTCGGATCCGCAGGCCG 3233377 36 94.4 0 ............G.C..................... | ========== ====== ====== ====== ==================================== =========================================== ================== 28 36 99.8 38 GTCGCAGCTCCTTCGGGAGCTGCCCTTCATTGAGGC # Left flank : CGCGGTGGAGACGGAGTTCTCCCTGGTTCGCTTCGACGGCGACCAGGATCGCGCCGACAAGGTGTACGAGGGGATCGACCCGCTGGTCGCGGACGACATCGCCGAGATCATCGGATTCGTCGCGTCCCGGCCGCCGCACGTCAACCTGGACCAGATCATCGTCAAGCCGCGCGATCAAGCCGATCCGGGCCGGTTCCACCGGCATTGAGCGACAGCCGGTTCCACCGACTCAAGACTGCTCGGCATCAGTGTCGGAGAAGAGCCGGGGACTTCCCTCGAGTGGCACGGTTCCCTCGACGACAGCGAGCCCAGGAGAACCCCTTTGCGAGCGCTCCGTCAGTGCACAAATCCCCGGGGAGCGCTCGCGCCTCGTTTCCGCAGGTAGAGAGCGCGTACGCGTCGTCCACCCCATTGTGGCCCTCGGATTTCAGCACTCGGAAGCGGAGCGCTCGCGGGAGGGGTGTTCCGCCGCTGGTCAGAGGGGGTAAATTTGAGGCGCT # Right flank : CAGCATCGATCCTCGTCGGCACCAACGGCCCTCGCCCCACACAGCAGGCCTTCGCGCAGTCAATGATCCAGGCCCCTGCTGGTATGGTGCGCGCCGGGGAGTTCGGCCGACGTGCAGCGGCCGTCAGCCGTACAGGGAGGGAGCACAACCATGAGCGCAAGCGACGCACCCGCGCCGGGGAGCTGGCAGGCATTTTCCGCCGCAGCCATCGGCAGCGGCCAACTCAGCCTCGACCCGGACAAGATGCGCGAGTGCATCAACTACTGCGACGACTACATCCGCAAGCTCCAGCGATTACAGGACCGAGCGAGCGACGAGCTCTACTACGAGACCCTCGGAATCGGTGAAGCAGACATCGAGACCTCGAGGCTGATCGTGCAGAAATTCCAGCACAAAGCCCGCGGTGGCGGCCAAATCGCAGACGAGAGCTCCGCCGTCGGCTACCTCCAAGCGCACATCAAGTACGCACGCGATCTCCGCGATTCGCTCCAGGCAGTACT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCCTTCGGGAGCTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 3249836-3248470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048813.1 Rhodococcus triatomae strain DSM 44893 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3249835 36 100.0 39 .................................... GTCGGTCGCATCGTCCGGGTTCGGTCGCGGCACGCCGTC 3249760 36 100.0 40 .................................... TGAGCCGACGGACGAGAGTGCGCACCCGCTCGGAATCCAG 3249684 36 100.0 37 .................................... CGACACGGCCGCCGTCGGGTCCCTCGCCGCCGAGACG 3249611 36 100.0 39 .................................... TCTCGAAGAGTTGGCCGCGGCCCTCGGCGACGACCCGAA 3249536 36 100.0 34 .................................... GGTCGTCGGGTCACGTACGGAGGAGCCGAACCCG 3249466 36 100.0 37 .................................... GGCATGCCGACGTATCTGCCCGGCGGCCAGGTCGTGG 3249393 36 100.0 38 .................................... CAAAAAAATGCCCCCTGTCGGGATGGGGTGCCACGGCC 3249319 36 100.0 39 .................................... TTCGATGACCCTGCCCGACTTCGCGATGGAGCACCTGGG 3249244 36 100.0 37 .................................... TCGCCGGACGCCTCGGCCTCGAGCATCGCCGACACAC 3249171 36 100.0 39 .................................... CCGCAGCCCCGCACCGGACGCCGCCCCCATGCTCACCGA 3249096 36 100.0 39 .................................... TGCTCTCCCGCTTCGGCCGGGCGAGGCGACTGGCAGCAG 3249021 36 100.0 36 .................................... TCGAGGAACCGCAGCCGGAGGCGGTGGACGTCCCGG 3248949 36 100.0 40 .................................... ACCATGGGAGCGCTCCGGCAGGCGTTCATCTACGCCGGTG 3248873 36 100.0 38 .................................... GGCGAAACCGTCGCCGACGCCAACGCCGACATGAAGAA 3248799 36 100.0 37 .................................... GAATGGTCAAAGTCGTTCGCGGCCATGCAGCGTCACG 3248726 36 100.0 38 .................................... ACAGCTCCGGCGTCGTACATCGTGTACGACACGCCGCG 3248652 36 100.0 40 .................................... GAGCAGCCCGTCCTCGTCGTGCGAGGCGGGCCGGACGAGG 3248576 36 100.0 35 .................................... GGCGAGCACATGCTGCACCACTTCGACGACCACGC 3248505 36 94.4 0 ..................................CG | ========== ====== ====== ====== ==================================== ======================================== ================== 19 36 99.7 38 GTCGCACCTCCTTCGGGAGGTGCCCTTCATTGAGGC # Left flank : AAGACGCGATGAGGCGGGACGACACGCGGCGCACGCTGATCGCGTACGACATCCCGGACGACAAGCGCCGGGTGCGACTTGCCAAGCTCCTGTCCAGGTACGGCGATCGCGTGCAGTACAGCGTGTTCGTCGTGGACATCTCGCCGGCTCGGTTGGTTCGTCTCGAACGGGAGATGGATTCGGTCATCGTGCGTTCGGAGGACTCGGTGCTCGTGTGTGATCTCGGCTTGACCGCAACCGTCGAGGACGGCCGATTCAGCTACCTCGGAAGGTCGCGACCGATCACCGACAATTCGTCGATCATCATCTGATTCCGAGGTGTTTCGCGAGCGCTCCGTCGGTGCACGATTTCCTGGGGAGCGCTCGCGTGATGTTTCCGCAGGTAGAGGCCATGTTCGTGCCGAAGAGTAGCCTTGAAGCCCTCAATCGGGGTGCTGAAAGCGGAGTGCTCGCGGGGAGGGTGCTCCGATGCTGGTCAGAGGGGGTAAATTTAGGGTGCT # Right flank : GAGCGGCCCGCTTGACGCGGCTCGACGTCGATAGCGGGAGGTTCTGGTTGTCCTTGGTTTGGTAGTTTTGACGGGCATTGGCGGTGGGACGAGTGGGGGATATGACCGAATCTGGTGAGGATTGGAAGGCGTTTGCGGAGTCGTGTGCTGCGCACGCGTTCTCGATCGAGCGTGATGGGCTTGTGCGGCTGGTTGCGCTGTGTGATCAGCATGCGGCGGACATGCAGCGGTTCGCGGATCGTGCGAAGGTTGAGCTGTACGTCAACACGTTGGGTATCGGGGAATCTGAGCTCGAGTCCGCCCGTACGTTGACGGCGAAGTTTCAGGACAAGGCGATCGGTGGTGGCAGCATCGCGCACGAGTCGAGTGCGGTGGGGGTGTTCGAGGCGCACCGTGATTGGGCTCGGGCGATGGGTGACAGTTTCCGGGCGGCGTTGCGGCGGTATGAGGAGCAGGATGCGGTGAATGCGGCTGGTTACGGGCAGTGGGGAGATTCGCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCCTTCGGGAGGTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 3267169-3267730 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048813.1 Rhodococcus triatomae strain DSM 44893 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3267169 36 100.0 39 .................................... TGGGATCAGCCTTCGCCATGATCACTTCTCTCCTTCGAG 3267244 36 100.0 41 .................................... CTGCGACCCCAGGTGCGCTCCACCGCCGACAGCCCGGTGGA 3267321 36 100.0 38 .................................... GGGTATGGGTTCTCACGACGACGTTGCGCTCGATCACC 3267395 36 100.0 39 .................................... GACGAAAACCCCAGCGGGCAATCCCACCGGGGCTTCATG 3267470 36 100.0 38 .................................... ACGGCGATCCGGCGCGGCACTATCGCTGACCGGTGGGT 3267544 36 100.0 37 .................................... CGGATCCTCCGGAACGCGGGGTTGGCGTCGGCTGGGG 3267617 36 100.0 42 .................................... GCGAAGAGCCTGGGGGTCGCGGTCTCGGCGGACTCGATGTTG 3267695 36 97.2 0 .......................C............ | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 99.7 39 GTCGCAGCTCCTTCGGGAGCTGCTCTTCATTGAGGC # Left flank : AGCCCTCGCCTGTCCCGCCTCGTCGAGGGCTCCCGACCGAACACCGAGACGGCTCGGTGACCGCCGTGGAAGGAACCTGGCGAGGGGCCGCGGCGCCCTTCGACAGGTGTTCACTGATCGCCGACCCGCTCTTCTCTCCGGTTGCGTGTCACTGTCGTGGGGCGTGCCCGGTCGAACGGCGGTGCCGATACACGTCGGCATCGGCGTGCACACGCCGGAGCGCGGCGACGACCACGCCCGAGGGTGATCGCGCCTCACCGCGATACCGTCGGCTGCCCCAATCGGACGACCGTCTGTCGCCGAGCCCTGTCGCCGAGTCGTTTCGCGAGCGCTCCACCGGTGTACGATTTCCCGGGGAGCGCTCGCGTCCCATTTCCGCAGGTAGAAGACGAGCACGTGTCGCCCACGCCATTCTCGCACTCGGATTTCGACGGCCGGAGACGGAGCGCTCGCGAGAGGGGTGTTCCGCCGCTGTTCAGAGGGGGTAAATTTGGGGCGCT # Right flank : CTCACGAGACAGCTCGGTCACGCGAGCGGCTGCCCCGTCCGGGCAGGGCTCCGTAGTTGTTGAGGCCCAGGGCCGCGACCTGCGGGTTCAGGATCTCAAGACCAGGTCGACAGCACGATGCGGGTTTACCGCGACACGTCGGCAGGCCTGGGCGATATTCGACTGCCCCGCCCGTCGATGAAGGCTGATCGCTGTATTCCGCAGCGTCGCCATCACCTGCGGTCCGTGACCGGCACGGACCGTGGAGCGGTCTTCGTCGAACGTCACGTCCCGTACCCAATGGACCCTGTTCTCGATCGACCAATGCCCGCGGATCCACCTCGCGAGCAGCTTCGGTGGCGCCTGCTCACAGGGCAACGAGCAGATCGCGTACACAACCTCGATGCTCCACCGGTCGGCACCGATCCGGCGGCGACGGCGAGTGATCTCGATCACCTGCTGCGCGTACGGGAATCGAAGACCACGGGTGACGGTGACGATCTTGTAGATCCGCGCCTCCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCCTTCGGGAGCTGCTCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 3269153-3269930 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048813.1 Rhodococcus triatomae strain DSM 44893 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3269153 36 100.0 41 .................................... ATGGTAAAACCAGCCGCTTCGAGTTCGTCGGCGTATGCGTC 3269230 36 100.0 36 .................................... GGGAATTGGAGGCCGCGCACAATGGATCGGCCAGAA 3269302 36 97.2 38 ................................G... CTTCTGAGACGCACAGAGCGTGCTCGTGCCGACTGGCG 3269376 36 100.0 36 .................................... GGCCTCCCCTCTGGCATCGCCTCCCACCTCCCCACC 3269448 36 100.0 36 .................................... CCGGCAGATCGAGGCGGTGACGTCGTCGCCGCTGGC 3269520 36 100.0 43 .................................... GCGCCCGATTCCGTCGGGGTCATCCCAGGCACGGATGTTCCCA 3269599 36 97.2 36 ....T............................... GAGTAGGGGTTCGCGTTGAGGACCGACCAGGCGGCG 3269671 36 100.0 37 .................................... CTCGTCCATCACTTCACCGGCCCGACGAGCTGCTCGA 3269744 36 100.0 39 .................................... CCGCTCGCGGACACGGTGCGGGTGACGAGGGAGACCGAA 3269819 36 100.0 37 .................................... ACGACCAGCGAACACCAGCCGACCCTCTCGTTCGGGG 3269892 36 86.1 0 ........................GA..C.C.C... | AT,T [3269915,3269926] ========== ====== ====== ====== ==================================== =========================================== ================== 11 36 98.2 38 GTCGCAGCTCCTTCGGGAGCTGCCCTTCATTGAGGC # Left flank : GCACCAGATCCAACCCATCCCCCTCGACCCGTCCGAGGACCTGCCGGATCGTGGCCTCGCTCGGCACACGGAACCGGATACCCAAGCGCACCAACACCTCCCGCGGAGCAGCTACGGCCCAATCCGCGATACTCGAATACGACCGAGCGCCCGCGGCAACCGCACACAGGGCAATCGCGATCAACGAGGGCAGCGAGTACCGGCGACCGCGACGATCCCGCGGATCGGGCACCACTTCGAGTGCAGTCATCAACCGCGGCACCTGCTTCTCGTCGACGACACCACCGACAAACCGGGTCAGCTGGTCAAGGCATGGGTCGATCGGGGACACTGTCCCGGCGGGCATGGGTGACTCCTTGTGGACGATCTGGATGCGTAAGACACACCCATGATCGGCCCCTGTCCCCATGCCCGCTCCACCGCCCCCACACGCTCCAACGAACCCAAACCACCAGGCCACAGCTCCGCTACTCAACAACTACGGAGCCCTGCCCGTCCGG # Right flank : CACCAACGGCCTTCGCCCCGCCTCAGTTCATGCGGCGCCCCAGACTGCAGGCCTTCGCGCAGTCAACGATCCAGGCCCCTGCTGGTATGGTGCGCGCCGGGGAGTTCGGCCGACGTGCAGCGGCCGTCAGCCGTACAGGGAGGGAGCACAACCATGAGCGCAAGCGACGCACCCGCGCCGGGGAGCTGGCAGGAATTTTCCGCCGCAGCCATCGGCAGCGGCCAACTCAGCCTCGACCCGGACAAGATGCGCGAGTGCATCAACTACTGCGACGACTACATCCGCAAGCTCCAGCGATTACAGGACCGAGCGAGCGACGAGCTCTACTACGAGACCCTCGGAATCGGTGAAGCAGACATCGAGACCTCGAGGCTGATCGTGCAGAAATTCCAGCACAAAGCCCGCGGCGGCGGCCAAATCGCAGACGAGAGCTCCGCCGTCGGCTACCTCGGCGCCCACATCAGGTATGCCACCGATCTCCGCGATTCGCTCCAGGCAGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCCTTCGGGAGCTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //