Array 1 248299-245296 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014924.1 Limnochorda pilosa strain HC45 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 248298 36 100.0 37 .................................... GTCGATATCGACGTGGCAACCGGCGTCTCGTTCGCTG 248225 36 100.0 35 .................................... GTCGGCGCGCTGCGGGACCTCATCGCCAAGCTCCC 248154 36 100.0 35 .................................... GACTACGCCGAGTGGGGCGTGACGGACTTCGCGTC 248083 36 100.0 36 .................................... CAGCGGGCTTGGAGCGGCGTCTGAACGAGTTGTCGC 248011 36 100.0 39 .................................... CCACCGTTGCGGAACTCGTGCCCATTCACGGCATCGGCC 247936 36 100.0 35 .................................... TGGCCGCAACGTAGCGGATCGTGTTGATGAGCCAC 247865 36 100.0 37 .................................... CGGCCACCAGTCGTTCGGGCCGCCCTTCGGCTGGCAT 247792 36 100.0 37 .................................... GCGGGGCGGCCTGCGCCGTGTTCCGGTTGTACTTCTC 247719 36 100.0 35 .................................... ACGTATATCGGAACCTTGCCGCCCCCAAGCCACCT 247648 36 100.0 36 .................................... ATCGAGTGTGGGCACGGGGCGCGGCTTCGACGAGGA 247576 36 100.0 38 .................................... GTCAGGACGCGCCGCAGGGGCGCCACGCATCCACGAGG 247502 36 100.0 37 .................................... GCGTGGACGTGCCAGAGGACCTGTATCTGCGCCTGAA 247429 36 100.0 37 .................................... GCGTGGACGTGCCAGAGGACCTGTATCTGCGCCTGAA 247356 36 100.0 35 .................................... TGACCAATATCACCCCAGGGCGGAAGACCTTGGTG 247285 36 100.0 36 .................................... GCTTCCATGGGTCTGGTCTGCATTGACGTGGATGAG 247213 36 100.0 36 .................................... CACTGGATTCCGATTCAACAGGTTGCGGGCGGAGGC 247141 36 100.0 35 .................................... CAGATCATCCTAAGATGGCACGGGTCGGCCCTCTC 247070 36 100.0 36 .................................... CAGGCAGGCAAGCAGCACGCCGTGGCTCGTACCCTG 246998 36 100.0 36 .................................... AAGAAACGCCTCGGTCGCCAAGACGTCCACGAACTC 246926 36 100.0 35 .................................... GGGCCCAGCATCTTCAGCAGGGCATCGATTGGGGC 246855 36 100.0 40 .................................... TACGCATTCCCCGGCGCCCGGCTGCTCGACCCTTTCGCGG 246779 36 100.0 37 .................................... ATACGTGAGCGCGAAGGGTGGTGGATAGTTAAGTACC 246706 36 100.0 35 .................................... CTCCTCTCCACCGGTTCGCGCATCTCCGCGGCCCT 246635 36 100.0 36 .................................... CCTTGGCCGCCCGCAAGCGCCGGAGCGCCGATTCTG 246563 36 100.0 36 .................................... GCGCTCCGCGTCCACGTCTCGATGGCGGCCCGCTCG 246491 36 100.0 37 .................................... GTCCGGCTCCCTGATCCTGCGCGACGGCCAAGTGATC 246418 36 100.0 36 .................................... ATGGCCCTGTCGCTCCCCGTGGGGGCGCTGACGTTC 246346 36 100.0 35 .................................... CTGGTACTACCAGGGAACCATCAAGGGCCTCCCGG 246275 36 100.0 37 .................................... GCCTCCGCCTCCCAGCGTCCGCACCTACGCACGATTA 246202 36 100.0 37 .................................... CACGGGGCCCTGACCAGCACGACATTCCCAGCCTCGG 246129 36 100.0 36 .................................... CCGTAGTCTGGCATCCTCCGCCCTGCCTCCCAGCTA 246057 36 100.0 36 .................................... GAGCAAAGCCGGATCGCCTTCACCACCCTCCTCGGT 245985 36 100.0 37 .................................... TGGTACCAGAGGCGGCGCGTCTACACCCTCCTCCAGC 245912 36 100.0 36 .................................... CGCCGCTGGACCGCCCAGGCTGACTGGCAGCAGGTG 245840 36 100.0 36 .................................... CCGGGCTAGGTCCACGGACGCGCCCTCCACCTTCTT 245768 36 100.0 38 .................................... ATGATGAAGCACAGCGCATAGTACGGCGGCCTGTTCTC 245694 36 100.0 36 .................................... TCTCTGTTAGTCACAACATCGAGATGAAATGGATTT 245622 36 100.0 37 .................................... AACGGCACCCTCCACTGACTCATGCGGGCTGGGCCAC 245549 36 100.0 37 .................................... GAGTACTGGAAGGATCTCAACCTCCTCCCGGTCATGG 245476 36 100.0 36 .................................... CCTCCTATGCAACCCCAAGATCCACGCCCACCTTGA 245404 36 100.0 37 .................................... GACAACGCCCGCCTGGTCCACCCCGAGCAGTATCCGA 245331 36 97.2 0 ..................................A. | ========== ====== ====== ====== ==================================== ======================================== ================== 42 36 99.9 36 GTGACCACCGCTGGAGAGCGGTGGCTCCGTTGAAGC # Left flank : GGGCCACACGCTGGCCCATTTGGGAGCCGGCGATCCCTCTGGACGTTGCGCGCTCGCTGATGACCCACCCCGAGCTCGGGCGCGAGCGACCTGATCCGAGAAGGCTGCATGCGCTGGGGGTAGTGGAAGTGTTCGAGTCCCTGCGGTCCACCGAAGACCGGTACCGGAACTTCTCGGCCGCACGAGCGCTCCTTGGCGCTGGTCCACGGGAGGTCGTTGCGGTCTAGGGGGACCGACGGAGACGGAATGCCTTTGCCTTGTCTTTGTACCTTGACAATTGAAAGAAGCCGGGTGGTGAAGACGGGAGCAGTGACGAGACTCGGTCCACGGTTCGAGCGCTCCAGTGAGCACGAATCGCCTGGCGGTGCTCGAAAGCTCGACGCAGACGGAGTCGCGCGGTTGGTGCGCGTGCCAGAGAGACCCCTGCTCCACTGGAGCCAAGGGGGGTGCTCGAAAGGAAGGGCGAGAGAGCCCTAGGGAAGCGTCCTGCACAAGGAGGG # Right flank : CTCATAGACCCGCGCGACCGCGCCCACCTCCGGGCTGGGGATCCGCCCCGTGGCCTCGAACTTCTCTCCTACGGCCGGGATCACGAACCCCGTCCTCACCTCTACATGGCCTTTGAGACTTCCTTCACCCTCACGGACCTCGAGACCGGGAAGGTGTACCCCTTCCGGCGGACCTTCGTCGCCTCCTCCGAAGAGCGGCGTGCCGCCAGGAAGAACCGCCGGCGCAAGATCACCAAGCTCTGCGAGGCCATCGACAAGGTCCAACGGAACCTGGGGCTTCGCACCCTCACGACCCCTGAGGCCGTGAAGGATCGAATGAAGGGTCTGCTGGCCACGGCCAAGCTCGAAGACGCCTTCGACTGGTCCGTGGAGGGGCAGGGGCGAGCGATGCGCCTCCAGTTCACCAAGAACGAGGCCGCCTTGCGACGCCTGCAGCAACTCGACGGGGTCTACACCCTGGTGACCAACCTGGGCCCTGAGTACACGAACGAGCAGTTCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCACCGCTGGAGAGCGGTGGCTCCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.70,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 1546071-1550643 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014924.1 Limnochorda pilosa strain HC45 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 1546071 29 100.0 32 ............................. CCAGAGGCCCAGGGATCGGATCATCCGTTGGC 1546132 29 100.0 32 ............................. CTTATTGCTGCCGTCGCTATTGCCTATGAACG 1546193 29 100.0 32 ............................. TTCCAGGCCGCGTCTCAGCTCGTCTCGAACGT 1546254 29 100.0 32 ............................. TCGATGCCGTCCTGGAGCACCTGGACGCTCAT 1546315 29 100.0 32 ............................. TGGAGCCCGGCGCTGTTGATACTGCTGGTCTG 1546376 29 100.0 32 ............................. GCTGCCTCTCAGTAGACCGTTCCTCCACCAGC 1546437 29 100.0 32 ............................. GCCCTCAACGGGGACATCCACGAGATCAAGGA 1546498 29 100.0 32 ............................. AACCTGCTTGCCATGGCGCATCTGCTTCCAGT 1546559 29 100.0 32 ............................. GCAGAGATACCGGATAGCGTTCGCCGTCAGGT 1546620 29 100.0 32 ............................. AACGACTGGTACGGAATGAGCCCGTTGGAAGT 1546681 29 100.0 32 ............................. CAGGCGACTCGCCTGTCGGAGCCAGAGTTGCA 1546742 29 100.0 32 ............................. TCGAGCGTGTGGCTCTGCCGACCAGCGAGGAA 1546803 29 96.6 32 ............................A CGGCATACTCGACGTAGACGTGGTAATGAGAA 1546864 29 100.0 32 ............................. AGCCGGCCCCGGACGGGCAGGCGGAGCGCGGG 1546925 29 100.0 32 ............................. CAGGTGGAGCAGCTCACCGCCACGGTGCAGCG 1546986 29 100.0 32 ............................. GCACAGGAGGCGGAGCAGCAGCAGTGACTCAT 1547047 29 100.0 32 ............................. GTCGCCCTCGCCCGCTTCCAGGCCATGACTCC 1547108 29 100.0 32 ............................. TAGGTGGCGACAACCTCGCGCAGAGACTGCAG 1547169 29 100.0 32 ............................. ACTCGGGCCGACCGGATCATCGGCGAGGTCAA 1547230 29 100.0 32 ............................. ACGCCCGCTCCGCCAATTGCGAGAGCCGCCGC 1547291 29 100.0 32 ............................. AGAACAGGAGGGCGGACAATGAGACGCCGTGA 1547352 29 96.6 32 .G........................... CTACGCCGGGCACCGCATCCTGCAAAGCCGCG 1547413 29 100.0 32 ............................. GTGGCAGGAGAATCGGCCGATCAGTAGAATAG 1547474 29 100.0 32 ............................. CTGCGCCTGGAGGAGGGCCGGGACAGGGCGGT 1547535 29 100.0 32 ............................. GTCGTTCCGTCGCCCACTGGCACTGGCATCAC 1547596 29 100.0 32 ............................. GGCGCGCTGGCGGTCCGGGCGGATCGAAAGCC 1547657 29 100.0 32 ............................. GTGCGCCGCAAGAATATCCGGCCCCAGCACTG 1547718 29 96.6 32 ..........G.................. ACGACGGGCGGGGACTACGGGGGCGGGACGGT 1547779 29 96.6 32 ............................C TCTGACCGGAACTCCCACCGCGTCGGGTGTGC 1547840 29 100.0 32 ............................. ACAAGCGCCTGCAGTACGAGGAACGGAAGTAC 1547901 29 100.0 32 ............................. GCAAGTCCAGCAACGCAGGCGCGGAGCTCACC 1547962 29 100.0 32 ............................. GACCTCGGACTCATCATCCTCCATCACTGGGA 1548023 29 100.0 32 ............................. GTTCCGACGGCAAGCCCTACGCGTGGGAGCTC 1548084 29 100.0 32 ............................. AGGGGCTGGTCCGGCCGGCGGGCCTCCAGGAC 1548145 29 96.6 32 ............................C CCGCGGCCATCGGGGCGAACGTGGATGCCTTC 1548206 29 100.0 32 ............................. AAGGCGTCGGCGTCGGTTCTGGAGATGTACGA 1548267 29 96.6 32 ............................A ACACGGCCGGATGGGCCGCAATCGCACGGGCC 1548328 29 100.0 32 ............................. GTGCTCCATGTCGCGCACAATGCCGGGGATAA 1548389 29 100.0 32 ............................. GCGTACAGGCCGAGTGCTCTGGGGCCGCCCCA 1548450 29 100.0 32 ............................. ACGTGACGTACATCCTCACCAACTGGCACGTG 1548511 29 100.0 32 ............................. TTTACAGGACGCCAGTGTCTCATGGCCTCCAC 1548572 29 100.0 32 ............................. GTACCACCTCCTGTCGAGTCTCAGCGGTTGCC 1548633 29 100.0 32 ............................. ACCACGGGCATCGCGATCAAGGCTGTGCGGGC 1548694 29 100.0 32 ............................. CCGGCGTCCTCCACCGCGCACGCCATGCGGTG 1548755 29 100.0 32 ............................. ATGGCCCCGACGAGGTACCCGAGACCGTCCCG 1548816 29 100.0 32 ............................. GGCGGCGGCGAGGCGGGGGAGGTGGCAAGGAC 1548877 29 100.0 32 ............................. GTAGGTGAGATACTCCGTCCGAAGCTCATGGA 1548938 29 100.0 32 ............................. GCGACCGGCTTCAACGCCAACGGCCAGCTTGG 1548999 29 100.0 32 ............................. CGAGGGCGCCGCCCAGGTTGGTCGCGAGGTAG 1549060 29 100.0 32 ............................. TCGGAGGTGCAGCCATGAAACTCCGCTGGCGT 1549121 29 100.0 32 ............................. ATAGCATGGCTGCGGCAGTAACGGCTGCCGCA 1549182 29 100.0 32 ............................. ACGCCAACGGCCAGTACATCTGGCAGCCCGGC 1549243 29 100.0 32 ............................. AGGGGCAATCGGAACCTCGCTGCCCTTGAGAT 1549304 29 100.0 32 ............................. GAGCAGGCGGAAGTCGAAGAGGTTTACAACGA 1549365 29 100.0 32 ............................. CCACGGCCATAGCCAGGGCCTGCGGCATGATC 1549426 29 100.0 32 ............................. CGGGATGTCAGCGTCCGGCATCTCCGACCGGT 1549487 29 100.0 32 ............................. AGCCGCACGGTGGCCTGCGCGACGGGTGAGTC 1549548 29 100.0 32 ............................. CGCCAGTGACTCCAGAGCTTGATGTCACCCTG 1549609 29 100.0 32 ............................. CAGACCGGGCAGTGGAGGAGCCGCGCCCGCTC 1549670 29 100.0 32 ............................. TGGGCGATGATCCAGGGAGCCAGGCGCCACTT 1549731 29 100.0 32 ............................. CTGGCCGAAATTGCCTGGTGGCGCAACAGAGT 1549792 29 100.0 32 ............................. AACCGAAAAAGAGGAAAGAAGAATCGGCGAAA 1549853 29 100.0 32 ............................. ACACCGAAGGCGAGCCGTTGGAGCCGTCGACG 1549914 29 100.0 32 ............................. GTGGGGGCGCGAGAAAAAGTGGGGGCGGGGGC 1549975 29 100.0 32 ............................. TAGAGAATGATGATCCCGGCCCACTTGATCAC 1550036 29 100.0 32 ............................. CGAACTCGGGACCCGCCACCATGCCCAACGGT 1550097 29 100.0 32 ............................. AAGGCAGCGAGAACTTCTCATCGGCCTTTGTG 1550158 29 100.0 32 ............................. ATGCTCGCGAAGCCCGCCTTGATGAAGTCGAT 1550219 29 100.0 32 ............................. ACCGCGCATAGAGGTTCCATCCGACTCGCTGC 1550280 29 100.0 32 ............................. GTGAGGCCCCGGATGAGGCCACAGGCGATGAA 1550341 29 100.0 32 ............................. GTCAGCAGGCAGCAGGCGCTAGGAATGTTGGT 1550402 29 100.0 32 ............................. GCGTTGCGAGCTGGAGGGCCGTTGCGTTTCCA 1550463 29 100.0 32 ............................. CCGGGGGATCCGTGCCATCCGCTGGCGGCAGG 1550524 29 93.1 60 ..........................TG. GAGAACCCGAGCTGCCCGTGGCGGATCGGCTGTTAGCAAGCTGCACCAGGCGCGACCCAA 1550613 29 79.3 0 ..C..T.........C......G...T.T | G,C [1550626,1550636] ========== ====== ====== ====== ============================= ============================================================ ================== 75 29 99.4 32 GTGATCCCCACGCGCGTGGGGGTGAACCG # Left flank : CCCGGGCCCCGAAGACGTCCGAACGGGCAGCCATGGATGTCCCTCCCACAAAGACCCCTGCAACTGGTATTGGATGCTGTGACAAACGGTACGAGACCATTATACCGGGGCGGGGTGGGGGGAACAAGAAAGGGGTGGCGGCGTCGCGCGGGCACGAACGGCCACAGCTTCGTCGCTGCTGGCTTCGCCGCAGAGGAGATGGGGAGGAGGCGCCGGGCATCTATGACGAAATCTAGACTGCACGGTGCCGCCCAGGAGGGCGCCCCCGTACCAATGATCCCAAGCGACTCATGCGCACCTTGACAACTGGTTCACCGTCGTTGATTTGGCCTGACGAGTTGTTCAGCATGACACGGCATTCGATCCGAGGGGAGTCGATACGAACGCGAGGGAGGACGAGTAGCCGCGACTATAGGCATAAGTGTGGCAAGTGTGTCGCACCTCAGCACTTCCGGGGGGCTTCGTGAATCGACACGCCACGAAGAGGCCGTTTGCTTAGT # Right flank : TCGTGTACTACTCCGTACGTTCCCACGCGCTCGCAGGTGAGCCATACGCCTACCGGTGGCGGGACATGGCCCAGCCATCTAGGCATACGTAGCCGGGTGCACTAAGAGGAAACGTACCTTGGCGGGCGAATGCATGTACGGGAGGTGTGAGGGAGTCGTCGGATCACTCGACGGGTGGACCCGCGAATTCGCATGGTCTGTCTCGTTTCGGTTCTTGGAGAGCCTTGAGCGACGGTGCCTCATGGGACCGCTGAGGTGGGTGGATTCACGACTGACTGGAGGCCTGGACACTCCATGGATCCGCTCTTTCTGTTGTGGGGGAAGACCACTCGAGGACAGCGGGAGACAGCCTACCAGCCGCAGCAGGAACTCGTCTTTCATCCCCTCCTTCTTCACATGATTGATACCGCAGAGGTTGCTCGAGCGATATGGCGTCGTGCGTTGGGGGCCTCCCTTCGTGGTCGCTGGGCTCGAGCGTGGGGGGTCGACGTGGACAGCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCACGCGCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCCCACGCGCGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //