Array 1 414-1769 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAN01000017.1 Neisseria meningitidis strain NmUS03x2 NODE_17_length_27591_cov_149.561_ID_48432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 414 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 480 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 546 36 100.0 30 .................................... GCCCCTGCTCGCGCACCGCCGCAACCTGCC 612 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 678 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 744 36 100.0 30 .................................... TACATCGGCGGGATGTTTCAGTTCGTTTAT 810 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 876 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 942 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 1008 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1074 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1140 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1206 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1272 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCGTCATGACG 1338 36 100.0 30 .................................... AAAAACTTTTTAGGGGGTCGGAAAAAATGA 1404 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 1470 36 100.0 30 .................................... AGTAAGATGAGAAAATTATTGGGGGGTGGC 1536 36 100.0 30 .................................... TGTACGACTCGGCTCAGGCACGCAACAAGT 1602 36 100.0 30 .................................... TAAATTTCAACACAAAAGATACGTATGCAT 1668 36 100.0 30 .................................... TCAGCCGCAGCGAGTTGGATACCGAAGGTT 1734 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TTTACTTGGCTTGCTCTATTATTCATGCTAAGTTAAATTGAGGACACGCCCTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //