Array 1 179884-177634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043570.1 Stenotrophomonas acidaminiphila strain T25-65 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 179883 28 100.0 32 ............................ GCCCGCCCGCAGGGGGTGAGGTGATGGCCCGA 179823 28 100.0 32 ............................ ACAGGCCCTCCTCGGGTCCTGATTCCGCCCTT 179763 28 100.0 32 ............................ AACTGGATTCACGACGAAATTCTGGACGGCCT 179703 28 100.0 32 ............................ TCGTCAAGCCATGAATCAAACTCGCGCTTGAT 179643 28 100.0 32 ............................ TCTGGCTTCCTGCAAAAACAACCTTGTCGAAC 179583 28 100.0 32 ............................ TTAATCCAATCGTTTTCCAGTGGATCGCGCAA 179523 28 100.0 32 ............................ TGCAGGACGGAAAGCCCGTGGTCGAGCACTAC 179463 28 100.0 32 ............................ TGACGGACAACAGTTGACTTGCGTAGCCGCAC 179403 28 100.0 32 ............................ TCGCCGCGCGACCGTGGAAACCCTAAAAACCA 179343 28 100.0 32 ............................ TTTCCAACCTGTCGCTGTACTACCAGAACGGC 179283 28 100.0 32 ............................ AGCAGGAAGAACGCTTCACGCAGCTGCAGCGT 179223 28 100.0 32 ............................ AAGTCGAGGAATTGTTGGATGGCGCCGGTTAT 179163 28 100.0 33 ............................ ACCGCCTCGAAGTCGCGTTTGGTGAGACTTCTT 179102 28 100.0 32 ............................ TGTGGTGACTACCATTTGCCCGCCGGGCACTG 179042 28 96.4 32 ......................G..... GCGCTCAGGTCGTACTGCAGGGCCAGCTTGCC 178982 28 100.0 32 ............................ GATCCGCAGCAGATGGGCAACGCGCTGAACTA 178922 28 96.4 32 ................A........... TTCACGGTGAACTCGGCGAACTCGCCATCGAA 178862 28 100.0 32 ............................ TCCACGCGCTGCTTGTGCCTGACTTCGGCCAC 178802 28 100.0 32 ............................ ATCAAGTCGGCGCCCGGCACCCCGGTCACCTC 178742 28 100.0 32 ............................ TGTGGCGGTCCGGTGCACAGCTGATCGGCGCT 178682 28 100.0 32 ............................ ATCCGCGAGGTATGGAGTCCCGACAACTGCCC 178622 28 100.0 32 ............................ ATTCGACATCGCCGTCGATGTTCGTCCGCTTC 178562 28 100.0 32 ............................ ACCAAGCGACAAGAAGCGCTAGGACAGCTAGC 178502 28 100.0 32 ............................ ATCAGGACGAGATCGCCGTCCTGTGGCGTGTC 178442 28 100.0 32 ............................ TGCCGCGCCCCGGAGCCGGTCGCCTGCTGCGC 178382 28 100.0 32 ............................ ACTTGAAACCTATGCGTATCAACAGTTTCAGT 178322 28 100.0 32 ............................ GTTGTGATCCGGTCATCAATCGGTGTGGGTGA 178262 28 100.0 32 ............................ AGTTCGGGATTGTCGAATTCGCCGTTGATCCT 178202 28 100.0 32 ............................ TGTGGTGACTACCATTTGCCCGCCGGGCACTG 178142 28 96.4 32 ......................G..... GCGCTCAGGTCGTACTGCAGGGCCAGCTTGCC 178082 28 100.0 32 ............................ GATCCGCAGCAGATGGGCAACGCGCTGAACTA 178022 28 96.4 32 ................A........... TTCACGGTGAACTCGGCGAACTCGCCATCGAA 177962 28 100.0 32 ............................ ACCAAGCGACAAGAAGCGCTAGGACAGCTAGC 177902 28 100.0 32 ............................ TGATCGACCAGGGAGCCTCTGTCGCTGGCGCA 177842 28 100.0 32 ............................ TATGGTCGGTGCCAGCGGCAAAGCCACGTCAC 177782 28 100.0 33 ............................ AAGTCGAAAGAGGCTGCAAACTTTCCGCTTTTT 177721 28 96.4 32 ........G................... GACGTGATCGGGCGCGATGCTGCGCTGCTGTT 177661 28 89.3 0 ....G.......G............G.. | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.2 32 GTTCCCTGCCGCATAGGCAGCTCAGAAA # Left flank : CACCCTGCGTCGCTTCCTGCAGGAAGATTGGCTCAAGGGTCTGCGCGACCACGTACGCCTTACCGGAATCAACCCGGTTCCGGAAAGGGCGCCGCAGCGCACCGTGTACCGCCGGCAGTTCAAGACCAACGCCGGACGCCTGCGCCGCCGTCGCATGCTGCGCAAAGGGGAGACCGAACAGCAAGCGCAACAAGCCATCCCCCAGAGCGTTGAGCGCCGCCCTAATCTGCCCTACCTGCACCTGCGCAGCCGCAGCACAGGGCAGCCCTTCTGCCTGTTCGTCGCCCTGGGTCCGTTGGCGAACACCCCCACACCGGGAACGTTCAACAGCCACGGATTGAGCAGCACCAGCACCATCCCGTGGTTCTGACCCTATTTCCAGTGAGTCAGTAGCGCTCTTTTAAAATCAGTGACTTGCGGATGCCCCCAGAAATTTGGGGGCATTCCTCTATTCAGGGATTTCCTTAGCATTACCAATGACTTGACGTGAAATTCCTCTA # Right flank : TGAATTTTATATCTTGGATTCTTTTTGACTTCGCTGGCGAGCAACCACCCCAGGAACCTGCGACGGCATCAAGCTAGGCTGCAAGGCTTTATCTTTCATTACGTTTGGCAGCCGCTGCACTTACGCTACTCCATCTGATGTAGGAGAACGCAAGGCATACACCTATCATCCAAATCCGGACGACTACCCTTGGACTCTTTCAGTGAACTCCCTCCGCCCCTTCCTTGACAAAACCCCCACCCTCGGCCAGCGCGTCTACGTCGACCCCGCCTGCACCATCATCGGCGACGTGGTGCTGGGCGATGACGTGTCGGTGTGGCCGGGCACGGTGATCCGGGGCGATGTGAACCATGTGCGCATCGGCGCGCGCACCAACGTGCAGGACGGCACCATCATCCATGTCAGCCACGAGAGCCCGTACAACAAGGGCGGCTACCCCACGCTGATCGGCGAGGGCGTGACCGTGGGGCATGGCTGCATCATCCATGCGTGCAGCATTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //