Array 1 199265-201215 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZDU01000001.1 Staphylococcus agnetis strain SNUC 5631 contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 199265 36 100.0 31 .................................... TAAGAAGTACCGTATCAGTAACAACCCCTTT 199332 36 100.0 30 .................................... ATAATAATCCGAATAACGCGATAAACTTCG 199398 36 100.0 30 .................................... GTTATACGCCTTTATATCGTCGTTTTAACT 199464 36 100.0 30 .................................... AATTGTCATTACAACTACACCTAACACTTG 199530 36 100.0 30 .................................... GTATCCACAAAAAGATTCCTACCCTATCCA 199596 36 100.0 30 .................................... TTAATTTTGTCATCAACTTCACTCGGCTTA 199662 36 100.0 30 .................................... AGCAATTGCTTCTTCACGGCTAACAGACCT 199728 36 100.0 30 .................................... GGAAGATGAGAAAACTATTTTGGATTTCCA 199794 36 100.0 30 .................................... ATCAGAAATCGGCAAAGTTTCTTTAGGCAT 199860 36 100.0 29 .................................... TTTACTAGGCAGAATATTAACATGCATGT 199925 36 100.0 30 .................................... GCAAATGGTATAGATGAAAGCTTGATAAGA 199991 36 100.0 30 .................................... GCAAATGGTATAGATGAAAGCTTGATAAGA 200057 36 100.0 30 .................................... TGCTAAAGCACTTGCCATATTTTATATCCA 200123 36 100.0 30 .................................... ATTTCGATAACTATTTGACTTTGAGGGTCA 200189 36 100.0 30 .................................... CGAGAATGGGAAGATGTCGCCAATGTAAGT 200255 36 100.0 30 .................................... GCCATTGCTTTGGCACGTTGTAAATCACGT 200321 36 100.0 30 .................................... TGAGTTTGATAACAAAACGCAAGCTGCTAA 200387 36 100.0 31 .................................... GCGCAAGAAAAGTTATATATGAACGAGCTTT 200454 36 100.0 30 .................................... TGAGTTTGATAACAAAACGCAAGCTGCTAA 200520 36 100.0 30 .................................... GTATTGCTAGTGGTGGTGGTATCTATGATT 200586 36 100.0 30 .................................... AGATCAAGCACAGCACATTTGTTTATAACC 200652 36 100.0 30 .................................... TGGAAGAAAACTAATAATCCAACTAAACAC 200718 36 100.0 30 .................................... TGACGTTAGGTAATGAAGTTTTAGCTAACA 200784 36 100.0 30 .................................... ATTTTCAATAACTTCTTTAGCTTTACTAAT 200850 36 100.0 30 .................................... GCAACCGCTTTATTGTATCTGTCTTCCATA 200916 36 100.0 30 .................................... CCTGCAAGATTTTTCTCTAACTCTGATTTG 200982 36 100.0 29 .................................... TGAAGTATAGGGAGGGCACGCACATGCTT 201047 36 100.0 31 .................................... CATCACGGCTGATACAATACTACGTGCTTGG 201114 36 100.0 30 .................................... TGGTAACCTTGCAACACGTGGCACAGTACA 201180 36 80.6 0 .........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.4 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTCGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATATGACAAAGGTCAAAAATAGTCAAGGTCAAAGTATTGTGATTGGTGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : ATGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCCATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATATTTTTGTTCTTCTTTTATAATAGTATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGACAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //