Array 1 171241-170175 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGO01000011.1 Pasteurella multocida strain 654BPM isolate swab isolate 3 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 171240 28 100.0 32 ............................ TCGCATTGCAGAAGATTACTTGTGAAAGATAT 171180 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 171120 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 171059 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 170999 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 170939 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 170879 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 170819 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 170759 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 170699 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 170639 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 170579 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170519 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170459 28 96.4 49 ...........................N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATCTAGCTTGAAAT 170382 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170322 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170262 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 170202 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================= ================== 18 28 99.6 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19950-22076 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGO01000007.1 Pasteurella multocida strain 654BPM isolate swab isolate 3 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19950 28 100.0 32 ............................ GCAATGTGAGTCATGCTAATTTTACGATTATC 20010 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 20070 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 20130 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 20190 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 20250 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 20310 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 20370 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 20430 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 20490 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 20550 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 20610 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 20670 28 100.0 32 ............................ GTGCCGAAATTGCACAAAGCGGACTTTGCACA 20730 28 100.0 32 ............................ TGTACCCGAAACAACTTGCAGATTAGCGCGAG 20790 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 20850 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 20910 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 20970 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 21030 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 21090 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 21150 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 21210 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 21270 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 21330 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 21390 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 21450 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 21510 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 21570 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 21630 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 21690 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 21750 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 21810 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 21870 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 21930 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 21990 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 22050 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.1 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //