Array 1 876-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCE01000142.1 Bacillus alveayuensis strain 24KAM51 LG50_142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 875 30 100.0 36 .............................. ATGACTCATTTCCAGAGTCATCAACCGCAGTTATTT 809 30 100.0 35 .............................. ACATCTAGTGAAGATGCGTTTGGTCGTACCGTTAC 744 30 100.0 35 .............................. TATCCTTCAAGGAATTGAGTTCACTCAGCTTTCAC 679 30 100.0 35 .............................. CCTAAAAACCCCAATTGAAGAAGTCCCCAAATAAA 614 30 100.0 39 .............................. CTGGTCATCGTAAGCACGGAGATGAAGCTCAAGATTATA 545 30 100.0 37 .............................. TAGGACTATGAATGTTCCAAGTGCAGATAAGGTAGGA 478 30 100.0 38 .............................. CGTAATTATTTACATCACGTTGCGCGATTTTGGTGATG 410 30 100.0 37 .............................. GATAAATGAAGTAATTTCCCTAAAACAAATGCAGCAA 343 30 100.0 35 .............................. GTGCTGTCGTTGAACTTAAAACCGAATTCACATCT 278 30 100.0 37 .............................. TTTGCTTGAGGGTAAAGTGCTAACAATAGGTGGTCAG 211 30 100.0 36 .............................. TTTGCCAACCTATACTTAAACGAGTTGGATCAATAC 145 30 100.0 36 .............................. AACAGAAATCGCGCGGAATCCGTTTTAGTGCAAAAA 79 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 100.0 36 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : ATGGTACTAAAAAAACACACTTTTTTTCTCCTTATGATGAAGTGTTTTCGACAATGGTTGAAAATAATTTTTGTAATAAATACGAAGCGTACTATGGTAAAAAACCAACAACACGATTAACTTTAACACCAATTGAAATTAAACCCAATTATAAAGTAGTCACAACTTTTAAGGGATTTCGCATCACGGCATGGCAAGGAAGATTTCAACTCACTTCATCTCCTGAGCAAATCAAGTTTGTATACGGGACGGGCCTAGGGAGTAGAAATTCACAAGGGTTTGGTATGTTCCGAATTATAGAATAGGTAAAAAAGTCGTCGACCTCCAGTAGTGTTAAAACCCCGGGGGATCGACGACTTTTTCAAATTCAAAGAGAAACGGAGAAAATATGATAAATATGGAGAAAACAAGTGTTTATAATAAAACTAATATTTTGTTTAAATGAAAAAAGAGGAATTTTATTTATAATGGAGAATATTATAATAGCAACATTTTTTGGG # Right flank : CCCGTCAACAATAGCATATGTTTTATCACGGTAGATAGTTTTTATCTTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 12270-9631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCE01000142.1 Bacillus alveayuensis strain 24KAM51 LG50_142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 12269 30 100.0 37 .............................. CAAAAGAAATCCAATACGGACCAAGAAAAGCAACAGG 12202 30 100.0 36 .............................. GTAACTGATGATACTGGTTGGTATTCGGTTTTGGTT 12136 30 100.0 36 .............................. TACAATATAATAAACCTTCTTCCGTAGTAGCAAACT 12070 30 100.0 36 .............................. AATATCCAAATCCTTCCCGAATCTCTTTTAGTCCTT 12004 30 100.0 35 .............................. CATCAGCAGAATTTGAAGCAACAAAAGACATGCAG 11939 30 100.0 35 .............................. TTTTATAGAGGCCTCTGATTCGCTCAGAGGTCTTT 11874 30 100.0 40 .............................. TAAATAAAATAAATAAAAAATATTGACATACAACCAATCA 11804 30 100.0 39 .............................. ACTGAATATATACAGGAACAAAAAGAATTTTATAGCAAA 11735 30 100.0 36 .............................. CTTACAACAATTTAAGCGCAAAACGAAAAAAGGAGA 11669 30 100.0 37 .............................. AAAACCGAAATCATTGATAATGCAGAAGAAAAGAATT 11602 30 100.0 38 .............................. ATAGTCGTAATTGGAATAAAAAAGATAGAATGGATTGG 11534 30 100.0 39 .............................. ACCTGATTACTAACTTACTGAAGAAAAAGGTTAATGATA 11465 30 100.0 36 .............................. CCTTTCATGATTTTGTAGTCACATGGATCTGTTTCA 11399 30 100.0 36 .............................. CGCTGACTTTTACACCTAAAACATCGGATTAACGCT 11333 30 100.0 35 .............................. GTTTCAATTTCATTTCTTCTCATCCTAACTCTAAC 11268 30 100.0 36 .............................. TTTTTATGATACAACGTAATGCGGTCGGCGACAATG 11202 30 100.0 40 .............................. TAATTTTCAAATTGGCGTATTTGCGCGAGATTTCCAAGAG 11132 30 100.0 41 .............................. ATCCCTCCATTGCATCCCCGACGAATCGGAGATACTAGCAA 11061 30 100.0 37 .............................. ATTAAACATAAACAAAACGAAACAAAACAAAAAAATA 10994 30 100.0 36 .............................. CCAACAACCGCTTTAAATTCTTTCCAAGCTAATTTA 10928 30 100.0 35 .............................. AAAACGGCGATCTTCAAATTCGAAGAGTATACGCC 10863 30 100.0 35 .............................. AACTACGAAGGAACGGCCCCAGGCGATCCGATATT 10798 30 100.0 37 .............................. CGATTGATTTAATCGACTATCGACACTTAGACCCTTA 10731 30 100.0 37 .............................. TCCATGTTATCTCCTCCTATTTTATTAGTAGTTTTCC 10664 30 100.0 36 .............................. CCCCAATGGCTTCTGCTGTTCCGGCAGACATATAGC 10598 30 100.0 35 .............................. GACATTGACCAAGCAAGAATCATTCGGAAAGCATT 10533 30 100.0 37 .............................. ATTGACAAGAAGGAGGAATTCACCAAACTTTTGGCAG 10466 30 100.0 37 .............................. TTTCCGACCTTTTGTGATGTTCGGAATTATTTTCCGT 10399 30 100.0 37 .............................. TATCACGGTGAATGCGAACCGTCGGATTATGAATTTT 10332 30 100.0 37 .............................. TCTCCTCCTATTAATAGTTTTGGTAGAGGATATGGAA 10265 30 100.0 38 .............................. AATGCGGTGAACCAGCTCAAAAGAATCGGAGTTATTGC 10197 30 100.0 38 .............................. CTAAAGGCGGTAAGCAAAATAAAAAATTCGTTAATGAA 10129 30 100.0 37 .............................. TAAAATTCCTCTCTGCCTTCTGGTGTGATGTCTTCAC 10062 30 100.0 39 .............................. ACAGGAGATTACGTACTATACTAAATCAGCTTGCACAGA 9993 30 100.0 36 .............................. CGAAATAAGTTTAAAAAAGTTTCAAAAACATGTCGC 9927 30 100.0 39 .............................. TAACGGAAGCCAACACAGCGTACCGCACCGCCAACGCCA 9858 30 100.0 38 .............................. TGTTGATAGCGAACTGAATGAAGTACTAGAAGAAGAAA 9790 30 100.0 39 .............................. ATTGCTGGTCTTGTATCTGATTTCGAAACGTATTTTTCC 9721 30 96.7 31 .............................T AAAGGGGCAAATAATGCCCAAACTGCTTTTC 9660 29 93.3 0 ............C...........-..... | C [9659] ========== ====== ====== ====== ============================== ========================================= ================== 40 30 99.8 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : AGAACAAAAAAAGCGTGAAGAAGAAGAACGACGTCGTCGAGAATTGGAAGAAAAACTGAAGAACATGCCAGATGACAAGCGGCTTGTCTTTGAAATACAACAATTAACAGATAAACCAGAAGATCAGGAAAAAAGTAAATCAGGCTTATATGATCAAGTAATAAAACAACAGAATCAAGAAGCAGCTAAAGCCTTAAAAGAATACTGGCAAAAAATCGGGCATTGGAATGTTAAAAAGAAAAAGAAAAAACAAATTGAAAAAGTACAAGCCATTAAACAATTGATAAATGAATAAAGGGCAATTAAATGAGAAGTCGTCGACCTCCAGTAGCGTTAAAAACCCGGGGGATCGACGACTTTTTCAAAAGCGAAGAAAAACAAAGAAAATGAGAGAAATAAGGAGAAAATAAGTGCTTTTACAAAATCTGATAATTTGATAAAAATATAAAAGAGGAATTAAAATAAAAATGGAGAATGTTATAATATCAACAATTTTTTGG # Right flank : TGATCATCAATCACTAGATGAAGCGTTGGTTGAAAAATTTGTTTTTTTTTATGTAAATTTTTTAAAAAAATAGAAGGATTTTATCGAAGATTGTTGAAATTATAAAATTGGGTAGTAAATTATACCTAATTATGGTTCAAATGGGGTGAAAGGTTTGATTGAATCTATTGCTCGGATAGGCAAGTTTGCGTTAGAGATAGAAAATAAAAGTGCAATAGAGCAGTTGATTGAAAACCCAGCTTATCCTTATTGTTTTTTCATTTTGCTTGATGAACACGATGGTCAAATTCTTTACAAAGGAATTGACTATGAAGAAGTTTCTGTTGATTACAAAAAGTATTTATTTCGTTCCGGATCATCTAGAGGTGCAAATTTTTCTCCAACTGCCAAGGTAACCACTTTAAGTAATACCTTTGAACAAAAAATATTAGGATGGTTCAAAAGTATTATTAAAGACAAAAAAGCACCCCATACAGACATATTTAAGAAAATGTATGATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 54783-55210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCE01000145.1 Bacillus alveayuensis strain 24KAM51 LG50_145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 54783 30 100.0 35 .............................. GAGATAAGATTTTCATACTTGTTAATATCTTGATT 54848 30 100.0 37 .............................. AGAGAAAGAAGGGGCAAAGCGAATAAGTCCAGCGGTG 54915 30 100.0 37 .............................. TCCTCTAGTCTACGTGGGATGGGTGCCCACGTACTGA 54982 30 100.0 36 .............................. TTGAGGAAGGTAGAAGAATTATAGAAGAGCGTCTAC 55048 30 100.0 37 .............................. GGATGCTTCTCCAGTTCCAAGCTCTGTGGAGTGTCAT 55115 30 100.0 36 .............................. CAATAGATTCATTTCATCTCCTGTATATCCTGCTTT 55181 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : AAACACAGTTTTTTCATCCATATGATGAAGTGTTTTCGCATTTAATTGAAGCTAATTTTCGCAATAAGTATGAAACCTATTACGGAGAGCCGCCAAAAGAGAGATTATTTATTGAACCTTTGCACGTTACTAAGAAACATAAAGTTGTAACGACTTTTAAAAACTACTACATCACTGCTTGGCAAGGGAGATATCGTTTGCGCTCTGCCCCGAAGAATCTAACTTTCCTTTTGCAAACCGGAATAGGTGGACGAAACTCTCAAGGGTTTGGTATGTTCCGTGTCATTCGAGAACTGTAGTAATGGAGTGTTTGTCGTCGACCCCCAATCGTGCAAAAATCCCAGGGGATCGACGACACTTCATTTTTCAGAGTAACGATATAAAAAATACAGAAAATACAAGGAAAACAAAGAATTGATAAAATTGACTGTTTACGCTAAAATGAAAATAACAAAATTTCCATTATTATCAAAATCTTGTATTATCAATGACTTTTTGGG # Right flank : TATTTGCTTGGTACAGGAATGTTTTTGAATCCTGTACCATATTTTTATTTTGTGGATTAAAACAAAGCAGTCAATGAATATTGTTTATTGTTATAGTTATCTTATCGTTTTCATCGTTATTTGCAAGTTGCCAGATGGAGATATAAGAAAGGCAGGGGAACATAAACGACACGGGAATGAGTGATTGTATGCTTATTGTTTAATTATTCCAAATATTAATGTTAGATGCAGGTATTTTATCCTGATATACCTTGAGCGGTTTGTTACTCTCTTAGAATTCTAAGAGGGTTTTGTTGTGTTTAGTGTTGATGGATTATTGTTCAATAAATTAAAATTAATATAAAAGTTGTTAAATTTAAACAATGTTAGGAGTTGAAATAGGAATAATGTACCATACTGTTGTGATGACGTGTGGGGTTTCTTTATTAACAGGAGGATCGAATGTTTTTTTTATAAAGAGAGAGGGATTTCCTGAGCTGCATGTATCTTTGCAGGAAAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 64428-66521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCE01000145.1 Bacillus alveayuensis strain 24KAM51 LG50_145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 64428 30 100.0 38 .............................. TTTTTCAGTCATTTTCATCGCTCCTCTATAGATAAAAG 64496 30 100.0 34 .............................. ACTGATTCAAATTTGGATTTTGCAGCCGATAGAA 64560 30 100.0 36 .............................. CAACAAGAAATCAACGAATTGAAAAAGCCGAAAGAG 64626 30 100.0 35 .............................. GAGAAAACGGTCACGACACCAGACGGGGAGAAGTT 64691 30 100.0 35 .............................. GACAACGGTTGTACTGAATACTGTTTGCATCCAGA 64756 30 100.0 36 .............................. AAATTTTAAATCCTTGATAATCAGGAGAAACATATA 64822 30 100.0 37 .............................. CCATCATTTTCTTTCGAAAGCGTAACCGTCGATGATT 64889 30 100.0 36 .............................. ATAGTTCAAACAGGCTAATAAATGTAAAATTTTTGT 64955 30 100.0 35 .............................. TATAATGAAGTACCCGACATGGAAGGGTGGGTTGT 65020 30 100.0 36 .............................. TGGACGTAGCAAGTGAAGCGGTAGAAGCACATAAAG 65086 30 100.0 35 .............................. CGCGCTCCGAAAGCTCTGTAACAACATAATCAACT 65151 30 100.0 35 .............................. AAAACGTATCAACAAATGACAGACAGCGAAAAACA 65216 30 100.0 36 .............................. TTACAATTTCCTACTAGAGAGCAAATGTCCCTAGTA 65282 30 100.0 38 .............................. TCGATGGTATCTTTTGTCATGTCTTCAACGTACTCAAT 65350 30 100.0 38 .............................. TAGCGAATTTCTACGCCTGTAAGGTCATGACACTTCAT 65418 30 100.0 39 .............................. CAACCTGCCAACGAGAACCGTCAAGGATATGCACCATAG 65487 30 100.0 35 .............................. AAATGCTTCTATTTCATGTGTTAAGTAGCAGTTGT 65552 30 100.0 38 .............................. TACGCTGTGCGTGTGTCGATGGAAAGGATTTCTGCTAC 65620 30 100.0 36 .............................. GCGGAAACTTCTCCGTTTGATTACGAAGGACTCGAC 65686 30 100.0 35 .............................. TGTGACGGATGACCGCGAGCCGGGCAAGCGTTGGC 65751 30 100.0 35 .............................. ATGGTTGAGGGGAAAGATTTTATCATCATTGGAAT 65816 30 100.0 36 .............................. GATGCTCCGATTGAAATCACATTCAAAAAACACCTC 65882 30 100.0 36 .............................. TCGAGTTGATGAAGAAAAACGGTATTCCATACGATA 65948 30 100.0 38 .............................. TCGCGACACGTTGATACGTCGAATTTAAGCACGTACAT 66016 30 100.0 38 .............................. ACAAAAAGGTGCACGAATACAAAAAGTTTTATATTTGC 66084 30 100.0 39 .............................. ACGTAATCGTGAATGGACTGTAGCACCCGATTCGCATTA 66153 30 100.0 38 .............................. ATCGGAATCCCATACGCATTTCCATAACGCTCGGCTAG 66221 30 100.0 39 .............................. AATGGCTTCACGAACTCCTTATGCCAATGTCCGCAATAG 66290 30 100.0 35 .............................. TTCCGGATCCACACCATTTTGAATTAGCCATTCTC 66355 30 100.0 37 .............................. CGGATACCCGGTACATTGAATACGGAACCGTATCGAT 66422 30 96.7 40 ................C............. ACATGAATGAAACGGCTCATGAATGCTTTTTCCTGATTCC 66492 30 80.0 0 .........C......C..A....G...CA | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 99.3 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : ACAGGAAAAAGAAAAACAAAAAGCATTAGAGGCGCAGGAAAAACATCGAAGAGAAGAAGAAGCTCGCTTAGCTGAAATGTCAGCGGAAGAGAGATTAGTCGTACAAATCGAAAAATTAACCAATCAGCCGCAAGATCAAGAAAAAAGTAAAACCGTTTTGTATAACGAGGTAATTGCCCAGCAAAACCGGCCAGCCGCCGCAGCCTTAAAAGCTTACTGGCAGCGTACTGGAAATTGGAATGTAAAAAAGCAAAAACAAAAACAATATGACAAAGTCCAAGCAATTAAGCATTTGCTGGGAGAGTAAAAAGTTGTCGTCGACCCCCAATCGTGCAAAAATCCCAGGGGATCGACGACACTTCATTTTTCAGAGTAATGATGTAAAAAGTACAGAAAATACAAGGAAAACAAAGAATTGATAAAATTGACTGTTTACGCTAAAATAAAAACAACAAAATTTCCATTATTATCAAAACCTTGTATTATCAATGACTTTTTGG # Right flank : TAAGTTAGCATGGGCTTTGGCTTATGAGAATTTATCGATTTGAGCTTATATAAACTCCTATTGAAATGTTGTTATCAATAAGAAGATTAATTTTTGGAAAAGAAGAGGCCTAAATACTTAAACAAAACGTAAAATTTCTATACGAATGAGGCTGTCTCATAAGGGTCTGACCTCACGCGAGTTTCACAATATATAGTTCATTTATCCAATGTTATGTCCTATAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 33122-33472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCE01000164.1 Bacillus alveayuensis strain 24KAM51 LG50_164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 33122 29 100.0 35 ............................. TTGTAATTTCGCTTAATAAGCTCTAACCTTATGCC 33186 29 100.0 35 ............................. ATACTTCCACAAAACCGTCATCCGGAGCCGATTTT 33250 29 100.0 37 ............................. GTTAAATACTGCTTCAACGTCAGTTTCAGTTTGTTGT 33316 29 100.0 35 ............................. TTTAACAGTTCAAGATTAACAAATATGTGTTAACC 33380 29 100.0 35 ............................. TTGAATGCAAAAACTTGACCAAAGCTACGAACATC 33444 29 93.1 0 ......................G.....A | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.9 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : ATTATTTTAACAATCATTATCTGATTTATGAATTTACATCAGATTATCAAGCGAAAAAGACGTTGCTAAACTATATGGTCATGACTCCTAATTTATTAAAATTATTTTCTGATCATTCCGGCTTATTTAAAAACATACATCAAACGTTGAAAAGCTCGTTTATTCGGCTCTTGCTGCAAGGAATCGATACGAAACATTTTATAAGTGAAGTATTGCGAAATAAAATAAAAAATTCGTATTCAACATTTGAAGTCATTCGTATGACGCAAATTCGCCATTTAAATCAACTATATGCAAAGGGGGATTTAAAAGTGGATAGCAGTGTGCAAAAAAGATATGTTTGGGCACTCGTGAAAAGTGCTGAGAAAGTAAAAATGATAATAAATAATGAAAAAAAGCACAGGGAATTGCATATCGTCTTTTAAATGCTGTTCGTTCCAATGACAAAAACACCTTCATGGAAGATTGTTAATTCGAAACTTGTTCTTGTAGGTAATTCG # Right flank : AGAATACCAGCTATAAAACTTTAATGGTTGCTTTAGGTATAGTAGTATCAGGAACCACACTCTTAGCAGTAATATTCATTATTGACATGACAACTGGTAAAGATCGAAATTATATGAAGAACAGTTTTGTAATATGCAAGGCTGTTTTTTTATTGTTTAGGATCATCGCTTTCTGTACTACCTTTGAAGCATCGATGGGAATAATCAATACTTTTTCTAAATCAGCACCCTTAAGTTCTTTTGCGAATTGAATTCTTCTTAAAACTTGTTTACCATTAAGTAGTCTCATTGACTATAACCTCCTTTGGCTTGGGGGGAATGATTGAGTAAACTTGGTTAAGTACTTCAATCGTAGCATAGTCATGAGACTTTTTTTGTATGAAATCATTATTTCATACACCAGAAAATTATAAATTTACAACTTGTGGACAACATTGTTCATCGTTGGTTTTTTGTCTAGCTCCGGGCGTTAGCGGCTAGCCAACTTCCCATTTCATCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 96875-96381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCE01000053.1 Bacillus alveayuensis strain 24KAM51 LG50_053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 96874 30 100.0 36 .............................. TTGTGAAGTCATTCCAGCCCGGCGCGATTGTAATCA 96808 30 100.0 36 .............................. TACAAAATCACAAGTGGATGCTTCACTTGCTACTAA 96742 30 100.0 38 .............................. CTACTTTTACTTTTTGTTGTCAACGCTATTTATATAAT 96674 30 100.0 36 .............................. ATATATGTTTGCCATTATTGTTATATTCCAATAGCT 96608 30 100.0 35 .............................. TACAAAATCACAAGTGGATGCTTCACTTGCTACTA 96543 30 100.0 35 .............................. ACACAAGGAGTGATTGCACCAGGAGCATATGGTAA 96478 30 100.0 38 .............................. ATTTCAAAGTCTGTATCAACAACCCGAGCAATAACGAG 96410 30 90.0 0 ...................A........TT | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.8 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : TTTTCTACAATACATTATTTGATGAAAACGCCGCATGCCACCTTGCGCTCGGTAAAGCTTATCCGACGAACTTAAAAAACGGAGCGGCCATGTCAAAAGAAGAACTGGAAAAATGCGGAGCTAATGACAGCTTAATTCACGAAGATTTCATGATTGGCTCCGCTGAACTGAACATCGACGGCGTCACAAAAGACGGAAAGCGCGAACCAATTTTCCGAAACGGGAATTGGGCGTTTGAATTAGAATAAAGCAAACAGCACATTTCAAACATAATCACAATCCAAATAGGATTTGCCATCATACTAAAATGTCGTCGACCCCCAATCGTGCAAAAATCCCCGGGGATCGACGACACTTTATTTTTCAGAACAACGACGTAGAAAATAGGAAAAAATACAAGAAAAACAACGAATTGATAAAATTCACTATTTACGCTAAAATAAAAATAACTAAATTTCCATTATTATCAAAACCTTGTATTATCAACGGTTTTTTGGGGG # Right flank : AGGAGAAATCATCATTTTTGAAACGCCAAGTTTTTGTCTTAGCTATGAAGGTGAAAAATGGAAACGTCTGACCGATTTCGCTCAAAAAAAGCTGTCTCATAAGGGCCTCACCCACTAGTATTGCATGAAAGTAATCAAATTGAATTTATAAAAAATTAACATGTTATTTTCGGCGTGAAACAAAAAGGGGAGCAGGGTGTTACATAGACCTTGTTCCCCTTTTTTTATTCTGTTGACTTCCTTGTTTTATGTTTAATCATTACGACTGTACCGACAAACCTTGTTTCCTTTTTCTTTGATATAGGAACTTTTTCTCTCCCTTTCGACGTTTTCTTATTTTGATAATTTTTGAGTTAATTTTAACTCGTTTGAATTGATAGGCACTCAGAAATTCTCCGGATGACGATATGATAAAATAAAAAGACTGTATTTTTATCTATCGTTGCCTTGAAAATACATGTACTCTTAGTAAAATAAGAGATGTACTTTCAAATCCTATT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 51-346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCE01000038.1 Bacillus alveayuensis strain 24KAM51 LG50_038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 51 30 100.0 38 .............................. ACTATTTACCCAAAAACAAAAGAGGAAATGAGAGATAT 119 30 100.0 34 .............................. TATAATGCTCGTCATCTATATAAATATAGACCTC 183 30 96.7 37 .........................A.... TTTAGCAATCAGCGTTGTGATTGGTATCGGGATTATC 250 30 100.0 37 .............................. ACAAATCCGATGTATACAGGTGATGCGAGTTCAGATC 317 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 99.3 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : TGAGGGATTGAAACCCGTCAACAATAGCATATGTTTTATCACGGTAGATAG # Right flank : CACTGGTAAAATTAGTGAAAGCAAATGGGGTGTAACTGCTAGAAACGCTCGACTGCATTGAGACCAGTCGCACCACAAATAATGGGATCTGCATTTACTAGAGGGGCAACATGTATGGCAACTTTGGCCTTTGGTGAGCCATGCGCCAGATGGGTTTCCACTTTTGTTAAACCAGCTTCCTTTGCTTCTTTTTCATAGCTTTCAAGCAGTCTTTTCCACGAACTTCAACTTCATCAATAATACCAGGAGCATAAGCAGAAACAGCTCCAAAACGGTCATCTAAAATGTGAGTAATAAATAAGTTCGCATCATTTCGCTTTGTAATGGCAATGGCTTTTTTAAATGCTAAATCCGCTTGTTCTGACCCATCAACGGAAACTAAAATGTTTTTGTACTTTAGGCTCATTTTCATGTATGAGTAAAATGTTTGTGGGAGGAAGTTAAGTCCTCTTTCATGTGGTTCAAGGGGGAGGAGCAAAATAGAGGCAAAAAGGACTCTC # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8851-7554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCE01000095.1 Bacillus alveayuensis strain 24KAM51 LG50_095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 8850 30 100.0 37 .............................. AAAGGCGTTTATCACGCCAATGATGGGAGTCTAATAG 8783 30 100.0 37 .............................. CACAAATTTCCAATACTATTCTTCCTGGAAAGTTATC 8716 30 100.0 38 .............................. CATGTGGAACGAAAAGCGCAGCACCAGTGAAAAAAGTT 8648 30 100.0 36 .............................. ACCATTCTCCTTATTTAACATCACCATAATTTTACC 8582 30 100.0 36 .............................. TTTAAAAGTTTGGTTTAGCTTCAAACGGAATTTGCC 8516 30 100.0 39 .............................. CTCTCGTTGCTGCTATGGCACAATGGGAACGTGAAAACC 8447 30 100.0 36 .............................. GAAGTAAAAAACAAAGAAAGAAACACTAACGATTTC 8381 30 100.0 35 .............................. TTTTGTTAAATAATCGAAAATATTTGTCAACTACA 8316 30 100.0 35 .............................. GAAAAATGGCTTAGAAAGGCAAATGAGGGCGGTAG 8251 30 100.0 37 .............................. TATGTCAAGTGGTCAAAGAGTCGGAAAAACGTTACGA 8184 30 100.0 35 .............................. ACCTTCATCATTAGACAAGCAGTTTCGGGAACAAT 8119 30 100.0 37 .............................. ACTATTTCCGATAGAGTCCATCATATAGCAGGTATGA 8052 30 100.0 35 .............................. CCGGATTTTCGAACGAGTCCTTTTTCGATTTGTTC 7987 30 100.0 39 .............................. ATACGTCCGAATTGTTCAATCCAGAAAACTGCGCTACCA 7918 30 100.0 37 .............................. TTTGCTCTATTCCATTTCTTTTCATATGAATATTTAT 7851 30 100.0 40 .............................. ACGTTTCGGCTACTTCTGTAATTTTTGAAGGTTTAGACGC 7781 30 100.0 39 .............................. TTAAACTTAATTTTATTAATTATTAATACAATTATTCAT 7712 30 100.0 34 .............................. GCGGAAAGAATAAGGGAATGGTTGACGTTTCCGA 7648 30 100.0 36 .............................. CGCTGATGGAATTGTTACAGCCGAAGAACAAGCACG 7582 29 90.0 0 .....................A..A-.... | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 99.5 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : AGAGTTTTTAGAAATGAAAAAGCAGCAAGAAATGGTCAAAGAAAAACCTGAAAAAAAGCCACCTCAAAAGAAAGAACGTCACAAAAAATTGTCCTATAAAGAACAAAAAGAATGGGAAACCATTGAGGACCGAATTGCTGAATTGGAAAATAAACTGAAGCAACTCGAACAAGAAATCGCTGATGCTGGAAGCGACTTCGACCGCATTCAAACTCTCTATCAAGAACAACAATCCGTTGAAGAAGAATTAGAAAAAGCACTTGAACGATGGGAAGAGCTGTCGTTTTTAGTAGAAGAGATGGAAGGGTAAAAATGTCGTCAACCTCTAATAGCGTCAAAACCCCGGGGGATCGACGACTTTTTCAAATTCAAAGAAAAACAGAGAAAATGAGAGAAATAAGAAGAAAATAGGTGTTATTACAAAATCTTATAATTTGCTAAAATGAAAAAGAGGAATTTTATTATGAACGGAGAATGTAATAATATCAACAAATTTTTGG # Right flank : GTGTATGGCGGTAAAAGATCAGCGGGATTGAAAAACTACTATTCACATTTCATTATACTTATCCTTTACTTAATCTTAGATTGTATAATTTATTCTAACTTGTTATTGAATGCTTATACTGTAATAATTTACAATGATATTAGGTATATTTATCCTAATAGAAAGGAGAAAATGAGGATTAATGTATCTGACGGTTGTCATTACGTGTGGTGTGTCTTTATTTAATGGCAGGAATAATATTTTTTCAAATTCTAGACAAGGTATCCCAAAGTTTCCGGTTTCCTTACAAGAAAAGAATTTAGGAAAAGATACTCGTCAAAAAATTGACCAATGGCTACATGATGTTAAGCCTTTTTTTGATGAAATGAAAGATAAGCAGAGTCAAATTAGTGCTGAATACTCAACGGTTTATCAGTTGAAAAAACAAAGAAAACTAGTAGAACGCCCGTTAATTATTCTTTTTTTCACCAATACAGCAGGTGGTTATGCTGCAGAAAAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //