Array 1 1140-1655 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MXOB01000014.1 Salmonella enterica subsp. indica serovar 6,14,25:z10:1,(2),7 strain BCW_1558 NODE_14_length_110107_cov_1.38032, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      1140	    29	 100.0	    32	.............................	CGAATTCTTCAACGGTGTAGTCGTTATTAATA	
      1201	    29	 100.0	    32	.............................	CAGCGCCGATGAACGCCGCAAAAGGCGGCGCC	
      1262	    29	 100.0	    32	.............................	GGGTGGCTGTTCATTATGTTCAAAACGGGTCA	
      1323	    29	 100.0	    32	.............................	GCATAACACTAAGATGGAAAAATTAACAAAAA	
      1384	    29	 100.0	    32	.............................	AGGCGGTTTCCGGCACTGCGCTGGGAGTTGAA	
      1445	    29	 100.0	    32	.............................	GTGGGCTGTGTGGGGGCGGAGCAATCCGCGCC	
      1506	    29	 100.0	    32	.............................	ACGCCATGATCAAGAGCTTCAAACATAAGGGC	
      1567	    29	  96.6	    32	...................A.........	ATCACGCGCCCGAAACCTACACCGGCTTATTC	
      1628	    28	  96.6	     0	.......................-.....	|                               	
==========	======	======	======	=============================	================================	==================
         9	    29	  99.2	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   AATGAAATCAAGCATCCTGTTGGGCGAGTGCGTGATATTGAGGCACTGGATGAATTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTAATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTAATCTTATAGACGGCCTGTCGTTGCCGTCTGTGGCTCATCTATTCCCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCACGGATAAATTTTTCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAAATTTTTTGTAGCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTGGAATGTAGTGCTGATAAAAAGTAATTCATAAACAATGATATACATGTAGT
# Right flank :  GTTGCATAATCATAATCTGTGTGCCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTATACAGGAGAAGGCTATGGCGTTAAGGATCTGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCAGACCTGGATTAAGCCTGTTGGTCCAGGATGAGTTTACGTCGATCTTGTTCGATACCGGGCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATTATCTGCCATCCAGATATTGCGCGTGAACGCTATGCGGCAATCACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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