Array 1 579-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSA01000032.1 Rhodothalassium salexigens strain IM265 scaffold0032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 578 29 100.0 32 ............................. CCCATCGGGCCAGTATCCAGAGACCAGCGATA 517 29 100.0 32 ............................. CCGACGATCTTTCGGCTGCCACTGCCCCGGTA 456 29 100.0 32 ............................. CCGGCGTCCGGGTTATTGTACCAGTCCTCAGA 395 29 100.0 32 ............................. ACACGACTAATCAGGAATTGAAGCGTTGGGAC 334 29 100.0 32 ............................. CATCAGGCTGGGATTGCCCCCGCGCACCAGAT 273 29 96.6 33 ............................A GACGAATGCGTCAATATCGCCGCCGCAGATTGC 211 29 100.0 32 ............................. ACGAACGACTCGATCAAACCTTGGCGCATTCC 150 29 100.0 32 ............................. TCGACACCGCCGCGCTGATAGTGCCGGTTAGC 89 29 100.0 32 ............................. AGTCAGTTCGACAGCACATACACACACATGGA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.3 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : GAGGCGCCGGCGGAAGCGCAACCGCCGGCCATCGCCGAGCCTGCGTCGGGCGACGTGGGGCACAGGGGATAGGCCGATGATGGTGATCGTGGTCGAAAATGTTCCGCCCCGTCTGCGCGGACGTCTGGCGGTCTGGCTGCTGGAGGTGCGCGCCGGTGTTTATGTGGGGGTCTATGGCCGGCGGACCCGCGAGATGATCTGGCGCCAAGTCGTCGACAATGTCGGCGACGGCAGCGGCATCCTCGCCTGGAGCGCGCCCACCGATGCCGGGTTCGAGATCGAAACCTGCGGCCCCAACCGGCGCGAGCCGGTGGACTATGACGGCTTTCGGCTGGTCGCGTTCCGGCCCCGGGACCGCCCTGGCCCCTCGGTCCAGCAGAAGACCCGAGCTCGCGACCGCACCTGAATACGCCGGATGTGGACCGCCGACCTAAGGCGGACCAGTCGGTGGATTATTTGACATTGTGAAAAATGTTTGCAATCAACGCTCTATACGAAGA # Right flank : C # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27789-30789 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSA01000006.1 Rhodothalassium salexigens strain IM265 scaffold0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27789 36 100.0 30 .................................... ACCTCGTCCATGCTGATGCGCACATGCTGG 27855 36 100.0 30 .................................... GCGGCCGGGCTTTTCCCCCCGCCAGGCGGC 27921 36 100.0 30 .................................... GAAGGCCCCGCCCATATAGGCGCCGCCAGG 27987 36 100.0 30 .................................... CGAGGCCGGGCGCGACCGCGCGGCGACCCT 28053 36 100.0 30 .................................... AATATTGAAGTGATTGGCGGTTCATACTTT 28119 36 100.0 30 .................................... ATCGGAGAACTCGTCACCGACCCCGAATGG 28185 36 100.0 30 .................................... CGCCGCGCACTTTGATCGACCCGAAAGACG 28251 36 100.0 29 .................................... TACATCTAACGCCAAAGGCAAAACACCTC 28316 36 100.0 29 .................................... CGGCAGATTCGGAAATCACTTTCGTAATC 28381 36 100.0 30 .................................... GAGGGCTTCGATTTCCCCCTGATTGCACGA 28447 36 100.0 30 .................................... AGAGTAGGTGTGAGATTAATGGAAAGGCGC 28513 36 100.0 30 .................................... TGGTGACGAGTTTGGACCGACGGAGACCGG 28579 36 100.0 30 .................................... CTTGGGGTGTAGACGGTGTACTTTTGCCAT 28645 36 100.0 30 .................................... TGCTGTGGATGCGCCGGCGCCTGGGCCGGC 28711 36 100.0 30 .................................... GGGGGGTGGCGACGACGACGCGGCCGAGGA 28777 36 100.0 29 .................................... TGTCTCTAGAACCGACCATGAGGCATACC 28842 36 100.0 30 .................................... TGCACTCAGCTACGCGCCCGGACCAATGCT 28908 36 100.0 29 .................................... ACCCCGATGATGGGTGGCTTTGGTATGAC 28973 36 100.0 30 .................................... CGCAGGGATTGTCCAGGCGCAGATCGAGAC 29039 36 100.0 30 .................................... GACGATCCGCGACACCATTTCAGCCTCAGC 29105 36 100.0 30 .................................... CCACGTCGCCAACCATATCAAAGGCGCCGT 29171 36 100.0 29 .................................... GACCGCATGCGCGTCATCGCGGCCATATC 29236 36 100.0 30 .................................... TGAAGCCGCTTAGGATCAAAACCGTCGGTG 29302 36 100.0 30 .................................... GTTCTACTTTATCTCCCCATACCATCCAAC 29368 36 100.0 30 .................................... TGCTACACCCCGATACCGAGGGTCTGGTGC 29434 36 100.0 29 .................................... CTACGTGGTCGACGTATCCACGCGGCAGA 29499 36 100.0 30 .................................... TGTTACGCCTCGCCTACCTGGCCGAGTACG 29565 36 100.0 30 .................................... ACCTACGCCAATTTCGACTGGATGGCGTGC 29631 36 100.0 30 .................................... TGCACGCGTGGACGCACACACATATATGCG 29697 36 100.0 30 .................................... GACTGGTATTCTTCGTAGGTGTCGAAGTAG 29763 36 100.0 30 .................................... GGCCGCTGTCACAACGGCAGATCATCCGAC 29829 36 100.0 30 .................................... ATGACTATCAGGGCGGTGCAGATCCGATTG 29895 36 100.0 30 .................................... CGCGCTGCTAGCAGCGGGACCATCTTGAAA 29961 36 100.0 30 .................................... TCAGCCGCACGTCGACGACGCACTGGCGCG 30027 36 100.0 30 .................................... TGCGCGCGCCCTGGTTCCGGTGGATGCGGC 30093 36 100.0 30 .................................... TGCGGGGTCTCAATCGTAGTCTCTTCCAGC 30159 36 100.0 30 .................................... CCGGCACATAGCGGTCGCGCTCCACCCGGT 30225 36 100.0 30 .................................... CTGCTGGTCGGACGAAAGCTTTTTCGCCCC 30291 36 100.0 30 .................................... CAAGGACATGGTGTGATGCGAGCGGCGGAT 30357 36 100.0 30 .................................... AGGTCCTTGGTCGCATTCTGCGCGTTCGCG 30423 36 100.0 30 .................................... TATCACTGATCCCAAGACCGCTCTGAACTA 30489 36 100.0 30 .................................... CTACGCCGGCTCAGTGTCTGAGACCACTGT 30555 36 100.0 30 .................................... GGCCGGCCGGCCAACGACGGTCGGAACACC 30621 36 100.0 30 .................................... CTGCCGGCGCTTGAAGGTGGCGAACGTCTC 30687 36 100.0 31 .................................... GGGGGCCAGGGTCAGGAGCAGGGGCCGGGGG 30754 35 88.9 0 ......................-....G...C.G.. | G [30787] ========== ====== ====== ====== ==================================== =============================== ================== 46 36 99.8 30 AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Left flank : CCGATTGGTCCGGGGCTCTTGCCCTGAACCCAGCGGTCGAATGAACGGCATTTGGCGGACCAATTCCTGAACCAGATAGCAAGATACGGTTATGTCTACGATATTGAGCGGCTATCGGATGATGTGGCTCTATGTGATGTTCGACCTGCCGGTTTTGACCCCTGACGAACGCCGTCGGGCGACCCGGTTTCGCAAGACTTTGCTCGATTGCGGTTTTGAGATGGCGCAATTTTCTGTTTATCTGCGTTTCTGTGAAAGCAAGGAGACGGCGGAAACTCATATCCGCAAGGTGCAGTCGGTTCTGCCGCCCGCAGGTTGCGTCCACATCATCACTATTACCGACAAACAGTATGGAAACGCACGGATCTTCCAGGGAACGATGCAGAAACGCCCCCCAGAAAACCCGGATCAATTGGTGCTTTTGTGATCAATCGGGGCTGTTTTTTGGCGTTCAGAAAAAAAGAAAAAGCCCTGAAAAACAGGGCTTTAGGTGAGGGTCT # Right flank : CCCTCATTTCCGCTGGAGGAAAACAGGAGGCACGTCAATGAGCGCTCGACAAGCAAAGGAAGCTTCCGTTAGAACCACGGCTAAGAAAGGAAAGGTTGGAATCCTTTCTTAGTGTGTCGGCCAAGGAAAGGACCCTTTTTCAGACATGGCGTTATCACCGGAGCCATCACGGTTGGGGCAGCGCGTGGCCATTTCGACCGCGGGTGAGCGCGCAGAGGCGTTCGTGCCGCCGCCCTTGCCGCCGACGCCGTCTGTCAGGATGGACCGGCTCTACCGTCAACTCGAGCGCGCGAACCGCGCGATCGGGCGGCTTGATGGCGTGACGTCCATCCTGCCTGACACCCCGCTTTTCCTTTACATGTATGTTCGAAAAGAGGCGCTGCTGTCGTCGCAGATCGAGGGTACGCAGTCGTCGCTCTCCGACCTGCTGCTGTTCGAGAGCGAGGAAGCGCCGGGCGTCCCGCTCGACGACGTGCAGGAGGTTTCCAACTATGTCGCCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 39-555 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSA01000072.1 Rhodothalassium salexigens strain IM265 scaffold0072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39 29 100.0 32 ............................. AGTCAGTTCGACAGCACATACACACACATGGA 100 29 100.0 32 ............................. ACGGCCGGGCTTTTGTGGCGGATAAAGTGCAA 161 29 96.6 32 ............................C AGCGCCGACAGCGCGGCGTAATCCGCGTCGCT 222 29 100.0 32 ............................. GCACCTCGAGAGGCAAGACTGCATCGTCGCGA 283 29 100.0 32 ............................. CGAAACTTGCCGCATCACGTCGAATCTGGAAA 344 29 100.0 32 ............................. GAGCCCTACACCGCAAACACCGACCTGTGGCG 405 29 96.6 32 ............................T ACGACGACCGGTGAGGGGCTATAGTGGAAATC 466 29 100.0 32 ............................. CGCTGGTATCCCTCGGCCTCGTACTCGTCGAG 527 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : GAACCGTCGACACCGCCGCGCTGATAGTGCCGGTTAGCG # Right flank : GTGTGTGCGTTGTCTCTCTGTTTTCGGTCTGAACCGCGCCGGGTTTGCCGGAGGCTCCAACTCCCGAGTAGGATGGAGCATCATGAGCAAGACGACGAACAAGTATTCCCCAGAAGTGCGCGAGCGTGCCGTTCGCCTGGTGCTGGACAATTAAGGGCAGCATGAGAGCCGCTGGTCGGCGATCCTGTCGATTTCATCGAAGATCGGCTGTGCGCCGCAGACACTGAACGACTGGGTCAAGAAGGCCGAAGTGGATCGTGGCGAGCGAACCGGTGTCACGACCGAGATAGCCGAGAAGATGAAGGCGCTGGAACGCGAGAACCCTGATCTGTTGTCTGATCGGGCCAAGCGCGACAAAGCTTTGCGGCCAGAGATCGAACGGGTCTGGGAGCAGAGCTATAAGGTCTATGGTGTGCGCAAGGTCTGACACCAGATGCGCCGGGAAGGCTTCGACGTCGCCAGGTGTACGGTGGCACGGCTGATGAGGAGACTGTGCGGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //