Array 1 291086-294772 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNHA01000002.1 Bifidobacterium longum subsp. longum strain MCC00256 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 291086 33 97.0 32 ................................A GATCACGCTCAAAACGCTCGGCTTCGACCAAG 291151 33 100.0 32 ................................. ATTTCAGGACACCCTCGACCCTTACCGGTGTG 291216 33 97.0 33 ................................A TCCCCGACCAGTACAAAGCGCAGGTGCTCCAGT 291282 33 97.0 33 ................................A GCGCTCCGCCGCAAGCTGACCGTAAAGACAGAG 291348 33 97.0 34 ................................T GGAACGCGCTTTACGACGGCGTGCAAGTATGGCC 291415 33 100.0 34 ................................. TAGCCGGTTTCGGTGGGGTGGGTGGCGCGTGCGC 291482 33 97.0 34 ................................G TCCACATGCCCGTCGGTGTACGTGACTTTCGCTG 291549 33 97.0 34 ................................A TCGACAAAACCATGAGCCAGATCAAAGGAGCATA 291616 33 97.0 34 ................................G TTCAGACCATGCGCAAGGCCGGCGCGGATATGGT 291683 33 97.0 34 ................................G ACACGAGCGCCGTGGAGGCCGCGACGAAGGCCAC 291750 33 100.0 34 ................................. CCGGACGGTGGCGGGGACACGTCGAAAAATCGTA 291817 33 97.0 34 ................................A ACATCGATGAAGACAGTCCCGTCGTTGATTTCCT 291884 33 100.0 34 ................................. CACCCTTCCGGGGGAGCCTCCCGGCAGGCCCAGC 291951 33 97.0 32 ................................A TCGGGTCGAACAAATATCGCGCGGTATTGGCT 292016 33 97.0 33 ................................T ATTTCGCCCGCGTTGTAACGCCAATAGTCGGAT 292082 33 97.0 34 ................................A TTGCATCAATCTTATCAAGCACACGTGAAAGCAT 292149 33 97.0 33 ................................T GCTGTTGCAACGACAAAGGTATAAAATACCCGA 292215 33 100.0 34 ................................. AGCACCACCACGTCAAAAAGCTTCGATAGTGACG 292282 33 97.0 33 ................................A ATTTTGATACCGTTACCCGGCTTGATGTCCCCA 292348 33 97.0 34 ................................A ACTCCGCGCGATGGTCCTCGCTGTAAATCGGGTA 292415 33 97.0 33 ................................G ACGCGGACCTGTCCGAAACGGGTGAGCTGACGG 292481 33 100.0 32 ................................. GTGGCGACGCATGGCAGTGGGATCTGTACGCC 292546 33 97.0 33 ................................A TGGCGCGGGATAGTATTTGTCGCCCGTAGGCGT 292612 33 97.0 35 ................................T GGATGATGACCGTGTGCGCCGTGTCATTCGTGGCC 292680 33 100.0 34 ................................. CGCAATGGCGGTCTGGTAGTCGCCTTGGGCGGCG 292747 33 100.0 34 ................................. ACACGTAACTCATTCGAGAGTCACAATAGTAGAC 292814 33 97.0 33 ................................A CCAGCAGGGACGGGCACACCGTGCACGTGAAGG 292880 33 97.0 32 ................................T TCCGGGGGCGCGTCATCTCAATGATGATGGCC 292945 33 100.0 34 ................................. GCTCGGGTGCTGTTGAATATCGTATTGGCGACAC 293012 33 100.0 34 ................................. CAATTAAGGGAAGAAGAAGATCCCATGCCATCAT 293079 33 97.0 34 ................................A CGACCGTGAACCGTGTGGAGAACCGGCCGCAGAC 293146 33 97.0 34 ................................T TGCGTTCCATGCTGACCGTCCAGCCGGGCAGCAT 293213 33 97.0 34 ................................A TCCGCATACTGCAGCCGGGGCGCGAGGGCGAGGC 293280 33 97.0 34 ................................A CGTCCGGCTGGAGGATAAGCGAGCTCACGGTGTC 293347 33 97.0 34 ................................T GTCGTAGTCGCGAAGGATCTTCTTGAGTTTGCGG 293414 33 97.0 34 ................................A AGACGTGCGCTCCCAGCGCCCTGAGGGCCGCAGG 293481 33 100.0 34 ................................. GTAAGCGCGCCCTCCGGGGGCCACGGGCCTTGCC 293548 33 97.0 33 ................................T TTTCCACAACCTTGAGAGCAAGCGGTTGATTCC 293614 33 97.0 34 ................................G CTTCCAGCGAGTTCAAGGCCGCGTCCGACACGCA 293681 33 100.0 33 ................................. GCCCGGCTGTAACATCTTGGGGTGCAGGTACCC 293747 33 100.0 33 ................................. TGCTCGACCCGATGGGCTCGCTGGCCGACATGG 293813 33 100.0 33 ................................. CCTACGGTAGAAGCATTCCCGAGGGCGAACCGG 293879 33 97.0 33 ................................G CGGCTATCCATGACGGCCACAATGCTTCCACCG 293945 33 97.0 33 ................................T ACAGTTTCCGCGTGCGCATGGGCGGCATCACCG 294011 33 100.0 34 ................................. GATAATGGGTTTTGTTAACTTGGATGACGGTCTT 294078 33 100.0 32 ................................. TTTTCGGAGCCTTTCTGCTCTTTCCGGGCTTG 294143 33 97.0 32 ................................G ATATTCCCATCCTGCAAAGTAAAGTCATTGCT 294208 33 97.0 35 ................................T CCCTCACCTACGTGGCGAAGGAATAAACAGGAAAG 294276 33 100.0 35 ................................. AGATGGTGATATTCGGACCGGTGTCGAACCCGCAA 294344 33 97.0 31 ................................G GAAGTAGCTTGAGCGTTTGAGCCCTGACCTC 294408 33 100.0 34 ................................. GTATGTGGCTACGGGTTCTTCGGCGCCACCGGTG 294475 33 100.0 32 ................................. TCACACAAGTCCTCGACCGAGACATACCGGAG 294540 33 97.0 33 ................................A GCGTGGTGTGCCCTAATCAATCTTTGAGCGTAG 294606 33 100.0 33 ................................. ACACACATTGTGAATCTCCCTTGAATTGATGAA 294672 33 100.0 35 ................................. TCCGTGGTGCCTTCAGGGGTGCCGGCGGAAGGCAG 294740 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= =================================== ================== 56 33 98.1 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGTGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : CTATAAATCGGGTAATAGTCGGCGCTGAGATGTAGTCGCACCCCACTGGTGTTTGTGTTCAATTAGTTGTTGCGGGTTTAGTCACG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 194032-192208 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNHA01000004.1 Bifidobacterium longum subsp. longum strain MCC00256 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 194031 33 75.8 33 ACGAA.TA........................A GGCAACTGCATTCCACGACGCAATAGGGATAGC A [194022] 193964 33 100.0 33 ................................. TCGGCCAAGGTGTTGATGGAGAGCCGGAAGCCC 193898 33 97.0 34 ................................T CGCGCACCGCCAGACTCGTACCCTGATTGCGGAT 193831 33 97.0 32 ................................G ACGGTTTCCTCCGCCGAGGCCGCAATCCGCCG 193766 33 97.0 33 ................................A TTTCGCGGAATTCGTTGGGATGCTCCTGCTGCC 193700 33 97.0 32 ................................T GCTCTTTCCGGGCCTGCCTTGCGCTTCCCGTT 193635 33 97.0 34 ................................G CAACGAGGCATCTCCTGAATACCAGCGACGCATG 193568 33 97.0 33 ................................A TTTCGCGGAATTCGTTGGGATGCTCCTGCTGCC 193502 33 97.0 32 ................................T GCTCTTTCCGGGCCTGCCTTGCGCTTCCCGTT 193437 33 97.0 34 ................................G CAACGAGGCATCTCCTGAATACCAGCGACGCATG 193370 33 97.0 33 ................................T TCGTGGCGTCGGTGGTGAGGTAGCCGGTGCCCG 193304 33 97.0 32 ................................A CCGCACTGGCCAATTGGAATGCCGAAACCGTC 193239 33 100.0 33 ................................. TGTTATCAATGAGATGACCCAGCAGACCAATCC 193173 33 100.0 35 ................................. ATTATGGTGACCGGCAGGACGACGGGTATGGCCCG 193105 33 97.0 34 ................................A GACTGTGGTTAACTTCAATATTGCCGGTGAGTGA 193038 33 97.0 34 ................................G CCTCAGTCATCAATGTACGCCGCATTGTCACGAA 192971 33 97.0 33 ................................T GCTCTCCAGAAGTCAAGTCTGCGCTTGACGTGC 192905 33 100.0 32 ................................. GATTCACCGAAATCAAACCGAAGAAAACCAAG 192840 33 100.0 34 ................................. ACGCCGGTTTCGTTCCACATGTCCTGCAAGCCGT 192773 33 100.0 34 ................................. ACGCCGGTTTCGTTCCACATGTCCTGCAAGCCGT 192706 33 100.0 34 ................................. CTTGCGGCTCCTGTGCCTCGTTTTGAGCGAGGCG 192639 33 97.0 33 ................................G CGTGCGGCCTCGCGTTCCTTGCCCTGACGGTCG 192573 33 97.0 32 ................................G TTTCAGGGGTGAAACCCACTTCACCCAAACCG 192508 33 97.0 33 ................................T GGATCGTGGTGAGGTCGTACACGGTGTCGTCCG 192442 33 97.0 34 ................................A TTAATTCTCATGTTCTCAATTTAACAACACGACA 192375 33 100.0 35 ................................. GTGATGCTGATGTAGACGGCGGCGGGCACGATCAA 192307 33 97.0 34 ................................A CTCCATCGGTGATCTGCACGTTGGTCACCGCCGA 192240 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 28 33 97.1 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Left flank : ATGACTAAACACGAAACACCGACTT # Right flank : AGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCCCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCCGTGCGGCCGAAGTGACCATACGCGGCGGTCTTCAGATAAATCGGACGTTTCAGATCCAGCTCGTCGATAATCGCGGCGGGGCGCAGGTCGAAGACCTTGCGCACGGCGGCGGCGATCTGGCCTCGCGTCACACCCTGCTCGGTGCCGAAGGTCTCCACGTTGACGGACACCGGTTCGGCAACGCCAATAGCGTAGGCGATCTGGATCTCGACTTTGTGAGCCAAGCCGGCAGCTACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCACCGCCGTGGTG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //