Array 1 5622-5023 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYG01000237.1 Acidithiobacillus caldus strain ZJ Contig237, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 5621 37 100.0 33 ..................................... TGAGCAAGTGTCTGTTGAGGATGCAGAGTTTAT 5551 37 100.0 33 ..................................... TTCAGCAAAAGCAAAAGCGGAATTTGAGGATAT 5481 37 100.0 33 ..................................... AGCGGAGAACTTCAACTTGAACATTCCAGCCAA 5411 37 100.0 33 ..................................... GGATCGCCTAATAGAATCAATGGGAAACGCACC 5341 37 100.0 34 ..................................... CTACGTCTTTCTCGAAGGTCTTTTCAACGTACAG 5270 37 100.0 34 ..................................... CTGCCTGGGTTCACTAAGTAACTTGGAAGATTAC 5199 37 100.0 32 ..................................... ACAACAAAAACAAAAGTGGTGGAAGATCTTCT 5130 37 97.3 34 ....................................G CAGGCTTTCTGGACACGAGCATGACCCTCTCGGA 5059 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 9 37 99.7 33 GTCTTAATCCCTTATTCATCAGGGCAATGTATCGAAC # Left flank : CCAGCACGAGCACATCAATCTTGGCCAGGCGTTGGAGGAGCTTGGGATAGCGGCCGTCCGCATGGGCAATTTCAAGGTCGGCGAGCTGCCTGGGAAGGCGCTGGTAGAGCACATGATAGCCGTCCCGACAGGCCTGATGGCCCAGGGCACAGGCGATGTAGGTCTTGCCGACACCGGTGGGTCCCAGAACGAGCACATTCGCGCAAATAGGACAGGGCCGCGGCAAGGCCTGGGCGCTCGGCTTTGGCTCCCGATACCTTGTCCTCGAAGATTCGGCTACAGCCGGCTTTCTGGAGGGCGTCGGTCTGGAGCGCGGTGTCTTGCTCGGCGGTGGATACCCGCGCGTAGCCGATCCGGGCCATGGTGGCCTCCTTATGTCCAGTTTATCGTCCATTTATCTTTTCGTTCGGCAAACCGATTGTCAAGCTATTCTGGGACGCTTGCCTGGGCTGTCCATTAAAGGAACCAATGTTGGCCGGGAGGATAGAGGATGAAGTGTA # Right flank : CACCCCCACCAAAAGAAGCCGTAAAAACAATGTATTGGGAGAGGGTTTCCCAAAAAATCTCGGGTCTCGATTGGCAAGGAACTTGCATGGGGTTTTCTCCATACGTATTCAGCATTGTGCCAAAACGTTGCATCCCAGGCCAGGGGGGCTCGGAAGCCCCCTCGGAGCGCTCAGTCGAAGAGCGCGCCCCAGGCCCACTCGACGACCGCAGCGGTCCCGGCGGCCGCAGCCAGCCCTACCGCCACCGGGGCACCGACGGTGCAGAGCACCGCCGTGCAACCCGCCGCCGCTGCTGCCTCGGCGACTGTCGCCGCCGCCGCTGCCCCGACCACGCCCGCGGCCGTCCGTGTCGCGGCCTCCTTGCCCCCGGTACCCACCAGCTGACCGTAATCGATGTCGCTCATTGTGCATCCTCCTGTTCTTACCTTGGCACCTTTGCCTGAGAGACATTCTGACACTCGCCGCCCGCGCTTTCCGTAACGACAATTTTGTGCTCAGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTATTCATCAGGGCAATGTATCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1031-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYG01000250.1 Acidithiobacillus caldus strain ZJ Contig250, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 1030 35 100.0 32 ................................... TGAGCGGGGATGTCGAGGATTTCGAGGATACC 963 35 100.0 32 ................................... TAGTAACACCGTCCTTGCTGCCAGGTACGAAG 896 35 100.0 32 ................................... CCCAACGGTGCCCGGGGCCACTTTCAGACGCT 829 35 100.0 34 ................................... ATGTTGCTCCTGTTGCCTGGCGTGAGCCTGGGCA 760 35 100.0 34 ................................... ATGGGCAGCATACGCTACGGCGCTGCTTCAAGCC 691 35 100.0 33 ................................... AGGTTGTGCCAATCGGTCACTTCCTCATAGTTG 623 35 100.0 33 ................................... TTTTCAGTAGTCTCGGAGTTTGTGCTTTTGCCC 555 35 100.0 32 ................................... TTGCGGGAATTTACTCCCAATCCTCGTCACGG 488 35 100.0 33 ................................... ATTTTGGAAAGCGGTATACGGAAGCGCTCATCG 420 35 100.0 33 ................................... TATTATCATGTGCTTTAGTGAAAGGCGAATAGG 352 35 100.0 33 ................................... ACTAGCCGCAGATCAGATCGAGCCGCCTGTTGA 284 35 100.0 32 ................................... CCATCGGTGCGGCGAGCGGCCTCGCGAATAAT 217 35 100.0 32 ................................... ACGATGTTCTCGCCCTCGGTCAGGGCGTTTTC 150 35 100.0 34 ................................... CAACGACTTTTGCAGCATCGGTAGCGGCGCTGGA 81 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 15 35 100.0 33 GTTTTACTTACCCCGTTTCTGAAGGGGATTGAGAC # Left flank : TTTTGCTTGGCTGGGGTGAGCGAGTACAAAAAAGCGTTTACGAATGTCGGATCGATACCCCAAGTCAATGGCTGGCGCTACGAGAAAAAGTGGCCAAGCATCTGGACGTGGAAACGGATACCGTACGCTATTACAGTCTCTGCGATGCAGATCGAGTAGAAATAAGCACCGATGGCTATCAAGAATATCGTGAAGAGTCCGATTTTTACTTACTCTAAAGCAAATTTTGGTTGTTTTACAACCAGTCTCTATCGGCTTATTGTTGCTGCGGAGCAACATTCCTCATTTTATAGCGAAATGGGAATAACCCTGCAACGCATTGATTCTTATGGTAATAAGAAAATACTCGAGATTTTTCTGTCCGCCTATTGTTTTGCAAAGAGTTTTGCCTGTTTTCTAGACGGATTCCATGTAGATTTGTTCAAATTTACATATTTTTGCACCCCATGTCCGCATATGGTTCCTGGAGCCCTTGCCTGGCGGTCTTTCCAGTGGATACT # Right flank : CTTTCCCGTGATCCTCGGGGGTACGCCGCACGAGTTTTACTTACCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTTACCCCGTTTCTGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 911-97 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYG01000330.1 Acidithiobacillus caldus strain ZJ Contig330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 910 37 100.0 34 ..................................... GGGATTACTCGAAGCCAATCTGGAAAGCGCGAGT 839 37 100.0 34 ..................................... GCCTTCGGGTCGAATTTCCCCTTGTAGTACGTCC 768 37 100.0 34 ..................................... GGCGGCGTCTGCGGCGTCCCATGCGGCGTCCCAT 697 37 100.0 32 ..................................... GTAACGTGTGGAGTAGGTGTAATGCAGACTTT 628 37 100.0 34 ..................................... ACGTCGGCTCGGGTGTAGTCTTTCTTGGTGTGAG 557 37 100.0 33 ..................................... TGCAGCGCCTGTGATTCCGCGTAAGTGTTGTAT 487 37 100.0 35 ..................................... ACGGCTCGAATGTAACTTTTACTGGATTCCGTGGT 415 37 100.0 33 ..................................... AATACCGCAATGATTATGGGGGCAGCAGCAACT 345 37 100.0 33 ..................................... GCTTCGAGCCCATTGCTCTCTGTCCTATGGTCA 275 37 100.0 34 ..................................... TAGCTCAATGCCAGCCGATTCTATGGCATCGGCA 204 37 100.0 34 ..................................... CCCGTTGTGTGTCGCGATGTAATAGGCAAGCTGG 133 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 12 37 100.0 34 GTTCAATACATTGCCCTGATGAATAAGGGATTAAGAC # Left flank : CCTGAGCACAAAATTGTCGTTACGGAAAGCGCGGGCGGTGGGTGTCAGAATATCCCTCAGGCAAAGGTGCCAAGGTAAGAACAGGAGGATGCACGATGAGCGATATCGATTATGGTCAGCTGGTGGGTACCGGGGGCAAGGAGGCCGCGACGCAGGTAGCTGCGGGCGTGGTTGGGGCAGCGGCGGCTGCCACCGTCACCGAGGCAGCGGTGGCGGCGGGTTGCACGGCGGTGCTCTGCACCGTCGGTGCCCCGGTGGCGGCGGGGCTGGCTGCGGCCGCCGGGACCGCTGCGGTCGTCGGCTGGGCCTGGGACGCGCTCTTCGGCTGATCGCTCCGAGGGGGCTTCCGAGCCCCCCTGGCCTGGGATGCAACGTTTTGGCACAATGCGGAATACGTATGGAGAAAACCCCATGCAAGTTCCTTGCCAATCGAGACCCGAGATTTTTTGGGAAACCCTCTCTCAATACATTGTTTTTACGGGTTCTTTTGGTGGGGGTGG # Right flank : CCCACCCAGATGTACTTTCGTATTCCCAGGTATAGTTCAATACATTGCCCTGATCCTGAATCCGTGACCGCGGCACCGGAAAACTATTTCAACGCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAATACATTGCCCTGATGAATAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 12518-14681 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYG01000096.1 Acidithiobacillus caldus strain ZJ Contig096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12518 29 100.0 32 ............................. GCTACGGCACGCCCACTCCGAACCGGCAGCGC 12579 29 100.0 32 ............................. AGCAGCCGGCTCCAACGGGTCGCCGGTCTCGG 12640 29 100.0 32 ............................. GGCTAATGAATGGGAGCGCGTCGAAGAGTGGC 12701 29 100.0 32 ............................. CATCCCACAGGGTATCCGGTGGCGCTGCCCGA 12762 29 100.0 32 ............................. CCGTGCAATGGATGCACGCGGAATTGACAGAG 12823 29 100.0 32 ............................. GAAGGCCAGGGTCTCGAGGTCTCCAAGGAAGG 12884 29 100.0 32 ............................. CCCGCGCCCGTGCATATCCTTAATCGGGAGAC 12945 29 100.0 32 ............................. GTCGTGGTTATCATGATATTTTCTCCTCCGTC 13006 29 100.0 32 ............................. ACTTCGAAATCAACCGTAGGCGATGCCTATGC 13067 29 100.0 32 ............................. CCACCGATGCGGAACTGGAAACCGCATGGGCC 13128 29 100.0 32 ............................. GAATGGTTTGAGGGTGACGTAGAGTTTGATAC 13189 29 100.0 32 ............................. AAATTATCAAGGATATATACTGGAATTATCCA 13250 29 100.0 32 ............................. GCAGGCCAAGGGCATCGAGGCAGGCCAAGGGC 13311 29 100.0 32 ............................. GTAGGGCTTACTGCGAGGGAGTTAGAACTCCG 13372 29 100.0 32 ............................. AAACTCCGGCACTGTTCTGGCACTACGCCACC 13433 29 100.0 32 ............................. TAGACAACATCGGCCCAATATTCCGATTTGTC 13494 29 100.0 32 ............................. CTCTCAGACCTTCACACCGTAGAGCATTATAA 13555 29 100.0 32 ............................. TCGCAGACGATGATTTTGTGCCCCGGCGCGGG 13616 29 100.0 32 ............................. ACCAGCCCCCGGCGGGCCGCCCGAATCTGCAC 13677 29 100.0 32 ............................. GCCGAGGAAGGCCCGGGTCTCGAGGTCACCAA 13738 29 100.0 32 ............................. CCAGCCGATTTTATCGCCTCACCAATGGCAGC 13799 29 100.0 32 ............................. ACTTCGCGCTGAGAGTCTGTCCGGACTTGGGG 13860 29 100.0 32 ............................. GTAAAACGGTCGGCCAGCAGGTTGTATTTAGG 13921 29 100.0 32 ............................. GCCATTACTGCAGCGGAATCCGGTCAGACTGC 13982 29 100.0 32 ............................. TCAAAAAAGAAAAGGCGCAAAGCATTATAAAA 14043 29 100.0 32 ............................. GTGATCTCGGAAAAAGTAGCGCAGGCGAAAGC 14104 29 100.0 32 ............................. TGTTGGACGAAGCCCAGAGCCGGGCCGTCGTC 14165 29 100.0 32 ............................. TGATGCAACGGTATCAGATGGCGGCGCAGAGC 14226 29 100.0 32 ............................. TCTAAGCAGAACGCGCCCCTGGATACATAGCC 14287 29 100.0 32 ............................. AAATCACAGGGCTCGAAATCCTCAGTCAGTCC 14348 29 100.0 32 ............................. TCGAACGGCAGTAGCGCATCAACAACGGATTC 14409 29 100.0 32 ............................. AGCCATGGGGCTAGGGCCGCAAGTACGCCGAA 14470 29 100.0 32 ............................. TAACGGTGCAGTCTCCGGTGACTTCGGGAAGC 14531 29 100.0 32 ............................. AAATCGTCACAGATCCGCCCTCACGGACCGAT 14592 29 100.0 32 ............................. ATGTGCTCGGAAGCCGCTTCGTAGGTACAAAA 14653 29 79.3 0 .........TT.......C..GC..C... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.4 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GGATGCCGTTCCTCCAGCCATTCCAGAACCTAAGGGACTGGGCGACGCCGGACACAGAGGCGGCTAACCATGGCTTTGCTGGTCGTCGTGACTGAAGTCGTTCCACAGCGATTACGGGGAAGATTGGCGGTATGGCTGCTGGAGATCCGCGCCGGGGTTTATGTGGGCGACGTCTCACGTCGGGTACGGGAAATGATTTGGGAACAGTGTGAAGCGCTGAAGGAAGACGGCAATATTGTTATGGCTTGGCAGGCCAACACCGAGTCCGGGTTCGACTTCCAAACTATCGGGAAAAACCGGCGTATTCCCGTCGATCACGAAGGGTTGCGTCTAGTGAAATTCCTTCCCGTGGAGGAAGAAAGTGGATCGTGAAGTCGCTCTTTAACAATCTGAAAACAGGCTATTTTCATGGCCAACCACGCGCATCCCATGCAGGCAAGAATGCTGGTGGGAAATCGTATCCCGGTTTTCGCAAATGATATCAATCAACTATGATTGGT # Right flank : GCGCTCTGGCGAGATGCTCATCCGTTACAGCCTAACGGTGGAGACGGAGAGGGCGCGGGTGATGCCCTGCCCGCCCCGGCATCTATCGGTGATGACGCTTCCGCCTGCGAGGCTTTAGCTCGATCAGTTCTTGCCTCCGGTCATATTTCCAGAGGCTGTAGGCAAACCAAATAGCCCCCACCTTCACGACGGCACCGAAACTAGCAAATCCTCAGGACAGGATGCTGACGATTTTACCGTGCGTCATGGGCCACCTACTTTGGCCTCTGAAAACAGCCGGATTTCGCTCCCGAGGATATACCCTACCACCTCAGCCCCTTAAGTCGCTTCTGGGGGTGTTTTTTGCCGTTTAGGGGGAATCGGCATCGCAGCGCTTGCGCCGCTTCCGCCGCCATTTCTCTTCCTGCTCTCGGTCGTACTTCCAGAGGCCGTAGGAGAACCACAAGGCGCCGACCGTAATCAGGACACCAAAACCGTCCAGAGCCCACATCACCTCGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2317-1862 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYG01000245.1 Acidithiobacillus caldus strain ZJ Contig245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================ ================== 2316 28 100.0 33 ............................ GGTCGGTTCTACTCGCCCGTGGGGGAAAAAACC 2255 28 100.0 33 ............................ GACTACAACCCAGATCTCCGAGTACGCATATTA 2194 28 100.0 33 ............................ ATGACCTGCTCCTAACCGTGGCGGAAATGACGG 2133 28 100.0 33 ............................ GCAAACAGCACGGGACAAGTGGATCGCCCTTTG 2072 28 100.0 33 ............................ TGAAGACCGACGGGCGGCGGCTTCCGCCCCACT 2011 28 100.0 96 ............................ TGGTCAAAAGTTCTTGGACGACCAAGCCGAGATATCTTCCCTGCGCTGGCGGGGAGAACCCCCCAGAAGAAATCGGGTTTATACTGGCTCTCGTGA 1887 26 85.7 0 ..-...........T........-...C | ========== ====== ====== ====== ============================ ================================================================================================ ================== 7 28 98.0 44 GTCGTCCCCGCGTGCGCGGGGGAGAACT # Left flank : CTTGACCAAGGACGAGGCGGAAGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACGGGCCTGAAGCACATCAACGATCGCCCCTGGGAAGAGATCGTGGCCGGTGTGGAGTGCGAATGGGGCTACCAGATCCATCGGTTTACGCCCTTCCAGTCCGGCGCGGTGCTGGCTGGTCTGCGCTACTTCGCCGGCGATCCGGTCATCGGCGCGCACAATGCGGTCGGGCGTGGTGAGCTGGCGCTGGATCTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGACCCCAAAGCGAGGAAGCCGGCACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGCCTGCTGGCCGAACATCTATCCGAATTCGACCGGCTGGCGAAAGCGGGCTTTCCGGGAATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGTGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGATAGA # Right flank : GCGGCAACCGTATCCTGAAACCAATCATTTTGTAGCTAATTATGGAGGAACTTGATGAAAAATATCATGCTGTCGCTACTGCCTGCCCTGTTTCTTTCGGTCTGCGCTGCGGAGGCTTTGGGGGCTAATGCCAACGTTGACGAAACGCCTGCGGTTACGGCTTACGCGACGAAGGTCAGCAAGATTTTGGCCCCACTCACGCAAAATGAGGAAGAAGTCGTGGAACGGCAGGTCATAAGAGTCCTCGGGCATCCTTTGCCAGCTAAAACTGGATTGTGTATGGCGAAAATCGATGTGAGACCGAATGGTTCTGTTGCCCATTTCACCATAATGCAATGCCATGGAGACGTTTTGGGCTCGGCCCTTTCACAAGCTATCGAATTGGCATCTTTGCCACCCACACCTTTTCATCACCAGGTAAGCATTTTTGTCGGTGTGGACTGCGGGGATACCATGCGTCCCATCAGTTGACTTCTGTGAGATCCACGATGGCCAGCGAC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 3891-3378 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYG01000245.1 Acidithiobacillus caldus strain ZJ Contig245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3890 28 100.0 33 ............................ TTCTGGACGTTCAAGAATGCAGCATCGGCTTTA 3829 28 100.0 33 ............................ CCGGCAACGGCCTACCCACGCAATATCGTCGAT 3768 28 100.0 33 ............................ TTTCATCAATGCCTGGGCAGGTGCCGCGGCGGC 3707 28 96.4 33 ...........................A GGGCATACAGGTCGCGAGATTCAGCGACAGGAA 3646 27 78.6 33 ..-.....T....CG........G..T. TTCGTCATGCACAAAGTTGACCACCATGTCTTG 3586 28 89.3 33 ....C........CG............. CGAGGTGTTTGAGGCGCTCAAGGGCGGTGTCGT 3525 28 85.7 31 ............CCG..........C.. TTGCAATCTGCATTTCGCATTTGCCCGCGGT 3466 28 85.7 33 ...A.........AG........G.... CGATTGCGCCGCGACGTGCAATCCCAGCTCTTT 3405 28 75.0 0 .G...........CG.......G.TT.G | ========== ====== ====== ====== ============================ ================================= ================== 9 28 90.1 33 GTCGTCCCCGCGTGTGCGGGGGAAAACC # Left flank : CTTCGGTGGACGAGCGGGATTTCCTGTTCGCGCCGTACAGGGACGCCATCGTGTTCCGGTCCCGCTCGGAGCCCTTGCCGGCCACGCCGGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGAAGGTCGAGTCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCAGTCCTACCGGAGCGGCATCGGACGGTACAAGGCTTTTGGGTGCGGGATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGCCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGA # Right flank : CACCGAAATCGGTGTTTTTTGTTCGTTTGATAAGAGGAGACACGATATGTCGATGTTGGAAACTTTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGAGCGGCGTTTTCGTCGGACGACAAGGGGGCACCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGCTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGAGCCATACGGGTGGTGCAGGAAGCCCTGAAGGCGCAGGGGAAAAGCTTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAGCGGAAAAAGGACAAGGTAACCCTCCCAGGCCGGAGTAACGGCAAAATGAAAGCCAAGGACGTCCTACGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGTCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCTTTCCCGCTGCCCAACGCGCAGGGGC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGTGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //