Array 1 210568-208828 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFL01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain 3149 3149_1_length_1070024_cov_17.0225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210567 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 210506 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 210445 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 210384 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 210323 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 210262 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 210201 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 210140 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 210079 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 210018 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 209957 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 209896 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 209835 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 209774 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 209713 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 209652 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 209591 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 209530 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 209468 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 209406 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 209345 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 209284 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 209223 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 209162 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 209101 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 209040 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 208979 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 208918 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 208857 29 100.0 0 ............................. | A [208830] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229107-227249 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFL01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain 3149 3149_1_length_1070024_cov_17.0225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229106 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 229045 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 228984 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 228923 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 228862 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 228801 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 228740 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 228679 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 228618 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 228557 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 228496 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 228435 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 228374 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 228313 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 228252 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 228191 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 228130 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 228069 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 228008 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 227947 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 227886 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227825 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227764 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 227703 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227642 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227581 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227520 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227459 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 227398 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 227337 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 227276 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //