Array 1 165401-163661 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOM01000001.1 Salmonella enterica strain BCW_4906 NODE_1_length_621259_cov_3.4219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165400 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 165339 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 165278 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 165217 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 165156 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 165095 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 165034 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 164973 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 164912 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 164851 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 164790 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 164729 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 164668 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 164607 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 164546 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 164485 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 164424 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 164363 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 164301 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 164239 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 164178 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 164117 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 164056 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 163995 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 163934 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 163873 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 163812 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 163751 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 163690 29 100.0 0 ............................. | A [163663] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183940-182082 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOM01000001.1 Salmonella enterica strain BCW_4906 NODE_1_length_621259_cov_3.4219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183939 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 183878 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 183817 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 183756 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 183695 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 183634 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 183573 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 183512 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 183451 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 183390 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 183329 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183268 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183207 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 183146 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 183085 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 183024 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 182963 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 182902 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 182841 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182780 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182719 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182658 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182597 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 182536 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182475 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182414 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182353 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182292 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182231 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182170 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182109 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //