Array 1 990858-991191 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025162.1 Lactobacillus crispatus strain KT-11 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 990858 28 100.0 33 ............................ TAAAAAAAGCAGATCACCCAGACTAAGGTAATC 990919 28 100.0 33 ............................ TTAACAGAAAAGATATAGATTTTTGAAAGGATC 990980 28 100.0 34 ............................ CAACACCAATGTTTCTAACACTTCTGCCTTCAGG 991042 28 100.0 33 ............................ CAACTGCTCCTGACGAATCATCAGAAGAAGCTA 991103 28 100.0 33 ............................ TCAAGTCGGTTCTCAGGAATACAACGCAATGCG 991164 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 6 28 100.0 33 GTATTCTCCACGAGTGTGGGGATCCTAT # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATACAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAGT # Right flank : TAATTTTTGAAAGGGATAATAAGTGAGAAGCTTGAAACGGGAAAAAAGACTATGAGTAAACGTTTAGTATGGACAATTATTTTGTATGGATCGGTATTGATTATTTTGTTAAAGATTTTGGCATATGTGGGAGTTAAACTATGAGTATAAATTTGAACGATCCAAATATATTGGAAGCAAAAGAAGCCACAAAAATCTGGGGCGTTTCTGAAGGCTATGTTAGGAAAACTGTAAGTCAATCGTCTAAAAAATTCTCTGAAGGTACTGTCAGAAAATTTGGTAAACAATGGGTAGTTACTGCCGAAGGAACGGAACAAGCTACAGGAAAAAGGATCCTAGAAAAAATAATTTAGTGAAGGATAAAAAAGCAAAAATATGTTTGAAACTAAAATTTAATGGTATTTGGCATAAGCGCCATCATAGCATTTTGGAAATTAGCATTCGGGAAGAAGAAATGGCTTAAGTAAATAGCACATTGTGAGCGATGTCCTATTTTGTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGGGATCCTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 1003697-1004056 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025162.1 Lactobacillus crispatus strain KT-11 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1003697 30 100.0 38 .............................. CGGATCAGAAAGTGGCTTTAAAGGGAACATTGTTCTGC 1003765 30 100.0 37 .............................. TTTTTGTGCATCCCTCCGAAGCGCCCATTTACATTGG 1003832 30 100.0 35 .............................. GTAGAAATCACATTAGGGTAGCAGAACAACTTAGA 1003897 30 100.0 36 .............................. ACAATGGGAAAATGACCGTCCAAACTATCTAGCAAT 1003963 30 100.0 34 .............................. TAAGAAAGAACAACAGGATCAGTTTTGAGATCAA 1004027 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 36 GTATTTATTTATCTTAAGAGAAATGTAAAT # Left flank : TTTGCAAGAATCTATTTTTATACCTAAAAAATAATCTAAAAGCTTAAAGTCAATTATTAGCACATTTATTTTGTAATGAGAGATAAAAGTAGACGAATATTTATTCTAGCTAACTAAGACTTGATTTTGATATTCAATCGGAGTTAAGTCTAAGTTAGCTATTTTTTTGATATGTTTTCTTCCTAAGAATTAAGAGATAGATTGGTATGACAGCATTCATTGATTAGTATAAGTCTTGCTGGTATTACTTTAAGTTGAATTTTTATAAAGACATCAATAATCTTAGAATAACGTAATGTTTGAATTTGAATAAAAATATAAAATTTGTCGATGCCCAATAATAGAATTTTGTTTGGAGATGGACAGATGCAAAGTTTGGTGATATTTTGTGAAATCTAAATATAGGTTTATAATAAAAACATAGATTTTGAGTAATTCAAGGTTGATCGACAGAATATGCTGTTTGAGTGCTTGATATATAAGGGTTAGAGATAGGTCCT # Right flank : TTCAATTCCTTATCCTCACAAGCTGCGCTTGCTCCGGGTATAAATAAAGTTACGGCTTTCATTTGTTACGATGCAACTTGACATTTATCGAATCCATGAGAAACAAAAAGTGGGAGCACCAGAGATGATTCATACTGCATCAAGTAGACAGTTAAAATAAATAAGCAAACTACTAATAGTGATAAGAATAAAAATAATTATTTCAGTAATTGTTCATGCCAGAGAAAGGATATACTTTTTTAACCCTGGGTCTAATTATTGAATATAACTAGAAAATGAATAAAATTATATAAAAAGCATGATAAAAGCAGTAAAATTCAAATAAAATGGAGGAATTTCAAAGAATGACAGAGAATAATAAACAAGTCCAAACCACTGATAGCAAGGCAAAAGTTAACTACGACACAGCAATCTTCGCTGGCGGTTGTTTTTGGTGCATGGTCGAACCTTTCGATACAGTTGACGGAGTAGAAAAAGTAGTTTCTGGTTATACTGGTGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTATTTATCTTAAGAGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1006091-1007037 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025162.1 Lactobacillus crispatus strain KT-11 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1006091 29 100.0 32 ............................. ATCCTTTTGGCGGAGTTGGTCGGCGGCTTGCT 1006152 29 100.0 32 ............................. CAAGACTTGCACCAAAACTTTGATACAAAACA 1006213 29 100.0 32 ............................. AGAAAAACGGTGATCAAATAATCGAGCGTTGG 1006274 29 96.6 33 ............................C ACTTGATGAAATTTGTACTAATACTACTCAAAC 1006336 29 100.0 32 ............................. TAGCAATTACTGATGATAATACCGGTGTTACT 1006397 29 96.6 32 ............................C CGATACATTAACCTACGGCAATTCAAATTAAA 1006458 29 96.6 32 ............................C GGTATTAACTAATGAATACCGCAGATGAAGTT 1006519 29 100.0 32 ............................. TGCAGTAACTTCAAATAGCTTTCACGGTCAAG 1006580 29 100.0 33 ............................. ACAAAGTTAACGATGATGACTTAGGTCCAGCAT 1006642 29 100.0 32 ............................. ATCAGAGCCACCTTTAGAATATACTCGAATTT 1006703 29 100.0 33 ............................. GATATGACAGTACCTAAAGGACAGGCGGGAAAA 1006765 29 100.0 32 ............................. GATATGAATAAATCTTGAAACCAACCTTACCA 1006826 29 89.7 32 ..........................TTG AGCAACAGGGTCGATAAAGAAACATCTAAACA 1006887 29 96.6 32 ............................C ACCTTGCCTTGTTGATGAAACTCTATTATTAT 1006948 29 100.0 32 ............................. CCAATTTTGGATGAATTAAAGCTGAAATTTAA 1007009 29 86.2 0 ............TG........C.....C | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.6 32 GTATTCTCCACGCATGTGGAGGTGATCCT # Left flank : TTGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAAGAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAACTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATATTTGTTTTTACCTAAGCTAGTTAAAAACGGATGATAAAGCAGGATTACAGCTAAAGTGGTAGGGTGAGATTCTCAATCGTGAGCGAAAAAGGATTGGCAGACAAATAATATATTTTAGCTTAAGAGAAATCATAGCTGAATGATGTTATGATTTCTCTTTTATTTGGATATTATATCAAGCGGATATTGTCTATTTAATAAGAATTGATATACTTGGTAATAGGATCAAAGTGATGAAAAAATGGTGTTTGCATATTTTCATTTAGCGTTATAAAGGGATTTGTTTACT # Right flank : CCTGCCTGCCTTAAGAACTTGGCTACCTGCTGCGTATTCTCCAGGTGATCCTAAAAAAATGAAAGGACGGTTTAATCGTGATACTAACTCCTAAAGAGTTAGATAATGTGTTAGAGTATACGGATTATGCACCATTACCAATATTAAAAAGTAATGCTACAGATAAGCAAAAAATTATTTATGTCGATTATATTGTTGAACGCTTAAATGAAAATAAAGTAGATGCTCCTTTTTTTAATAAAAAGTGTAAATAACATAATCTTATTTTTTAGAAAAAATATAGCTTAGAGAATCATTGTATTCTCCATATATGTGGAGCTGATTTAAAAAAGTGATAACTATATTTTAGATATTCATTGGTATGAGATAAACGAAGAGAAATTGTATTTACCTAAAACAAAGAGGGTATAAAAATGATGAAACTTAAATATATAGGCGAGACTTTTTATGATGGACTAGGCTTAACGAATGGTAAAATCTATGAATGTTTAGGTGAAGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGCATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1022008-1022953 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025162.1 Lactobacillus crispatus strain KT-11 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1022008 29 100.0 32 ............................. CACATTCTCGATGTTTTCAGGGTCAAGAGGGT 1022069 29 100.0 32 ............................. AAGGTCATGGCTTCAATGCAACAAATCTTGCT 1022130 29 96.6 32 ............................T GGGTTAGTGATCACACACCAAAACCTGTTAAG 1022191 29 100.0 32 ............................. GATTTGACTTCGTTATGAGTCCAGATTTCAGC 1022252 29 96.6 32 ............................T TAGCGTCTTGAGACACATTTCCTTCATTTGCA 1022313 29 100.0 32 ............................. CACCTCCTATCTGTGCGTATCTCTGTTTCTGG 1022374 29 100.0 33 ............................. CTCACCTTTGTCATCTTCTACGCAAACAATCCA 1022436 29 96.6 32 ............................T GTTAATGAGTTTCAAGCGGCAGGCATCAACTG 1022497 29 96.6 32 ...............A............. AATACAAGTTTTCATATCTAAGAAGACAAGCG 1022558 29 96.6 32 ............................T TTCACTGTCTTTTTCCGCCAACATACTAGTAA 1022619 29 100.0 32 ............................. ATCAGGACGACCTGAAACGTTGCTCCAGTCAA 1022680 29 96.6 32 ............A................ ATCAGGACGACCTGAAACGTTGCTCCAGTCAA 1022741 29 96.6 32 ............A................ GTATTTGGTAGCCGTTACTTTGCTATCAGATA 1022802 29 100.0 32 ............................. TCTTTTTCAGTGAACGTTGTGTCCTTAGTTCT 1022863 29 96.6 32 ............................T AAAAAGGAGTTGAAAAACTCCAAATATCGTGC 1022924 29 89.7 0 .........................AA.A | C [1022946] ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.7 32 GTATTCTCCACGTGTGTGGAGGTGATCCC # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGACAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //