Array 1 224925-223187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIG010000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain SGEHI2016-PSU-BS-020SL opera_scaffold_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 224924 29 100.0 32 ............................. TGTACAGTGTCAGTTATTACCTGACACATGTC 224863 29 100.0 32 ............................. CTGCATAATTGGCCTGGCAAGGTCAGTGAAAG 224802 29 100.0 32 ............................. TAAGAGGCGGTATCATTTTTGTCTTCGGGCGG 224741 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 224680 29 100.0 32 ............................. GCCGTTGATAAAAAAACGGGCGAACTGGACAA 224619 29 100.0 32 ............................. AAGAACGTTTGCAACTCCCTGGTGAAGCGGTG 224558 29 100.0 32 ............................. TTTTTTGCGTCCCTGCCTCCGGATGAACAGGA 224497 29 100.0 32 ............................. ACCTCAATAAAAATTTACACCGCCACACCGGC 224436 29 100.0 32 ............................. GCGATGCTCAGGATTCAGAATCTGAACGTCCA 224375 29 100.0 32 ............................. ACGCTGAACCTGAAAAGCACGTTGCCGGGCGA 224314 29 100.0 32 ............................. GATGGACACCACAACTACGCGGCGGCAAAACT 224253 29 100.0 32 ............................. ATCGGGGAGGTTGTGCAAGGGATTTTATCGTG 224192 29 100.0 32 ............................. TCAGCAAAAAAGACCTGTTTGCCGATATGGGG 224131 29 100.0 32 ............................. AACCGGAGGGGGTTCCTGCCGGGTACGCATAA 224070 29 100.0 32 ............................. CAGCCCCTCTAAAATTGTTGCCCGCCACGTAA 224009 29 100.0 32 ............................. AAAACCAGCGATAACGGGCGGGCGTTTATACG 223948 29 100.0 32 ............................. CGACGCCCGATTCCTGTTGCCAGCGCCCCGCA 223887 29 100.0 32 ............................. GCCGCTATCACCAACGACCCGGGCGTTGTTGG 223826 29 100.0 32 ............................. TTCCGTCGTGTAGCCCGCTGGTTTGGGTCGGA 223765 29 100.0 32 ............................. TTGTTATCCCGCCTGTGGTTTAATCGCGAGTG 223704 29 100.0 32 ............................. CCGGGTGCATCATGCAAAATCCTATAAGGAAA 223643 29 100.0 32 ............................. AATTGTCAGTGTAATTGCGCATATCGTTCGTT 223582 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 223521 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 223460 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 223399 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 223338 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 223277 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 223216 29 96.6 0 ............T................ | A [223189] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCTGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235897-234588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIG010000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain SGEHI2016-PSU-BS-020SL opera_scaffold_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235896 29 100.0 32 ............................. TCGTCCGAACGTACCCTGGCTGTCCAGGCCGC 235835 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 235774 29 100.0 32 ............................. CTCACCCGATTAAACAAGAGGAGCGCAGAAAC 235713 29 100.0 32 ............................. TTTATATCCAGTTTTCGGCAGAAGCGCCGCAA 235652 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 235591 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 235530 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 235469 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 235408 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 235347 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 235286 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAAACC 235225 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 235164 29 100.0 32 ............................. CAGCGCAGACTACTGGCGCTGACGGCTCGTAC 235103 29 100.0 32 ............................. CCTCCGGAAGAGCGGAATCCGACATAATTATT 235042 29 100.0 32 ............................. ACTCGCTTATGCATAGTGACAATTGGGCAACC 234981 29 100.0 32 ............................. TTGAAAGAGCAATTAGCGCCGCTGGCATCAAG 234920 29 100.0 32 ............................. GCGCCGCGCAGTTCGTGGACGCGAAACGGATT 234859 29 100.0 32 ............................. CTACACATGCACCGGGTATCCGTGAGCATGAT 234798 29 100.0 32 ............................. GCGGGCATGTAAATAGCAGGTCAGCAGATACG 234737 29 100.0 32 ............................. ACACAAATGCAGTTAGCTAATCGTGCATGGCG 234676 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 234615 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //