Array 1 10963-11538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNH010000030.1 Achromobacter sp. GG226 NODE_30_length_48621_cov_201.294764, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10963 29 86.2 32 .......C...AT.C.............. CAGACCACCAGCACGGCCTGCCGTCCTATGAA 11024 29 86.2 32 .......C...AT.C.............. CTGTCGATCTGGTTCGAGCTGATCCGCCCAGA 11085 29 100.0 32 ............................. CCGTAAAAGGCGAGGACCTAGCCGATGTTCTC 11146 29 89.7 32 .......C.....G..........G.... GGCACCGTGGCTGCGATCCGTGAGGTGCTGGA 11207 29 89.7 32 .......C..........A.A........ CCCCAGCGGTCGAGCTCAGGTCCGGGCGCGGC 11268 29 89.7 31 .......C.A.....C............. CCTGGTACGGCCAGCTGGTAGAGCTCGGTTA A [11295] 11329 29 86.2 32 .......T....T.........G....A. AACGCATAGCCTTTGCCGCAGATGTTGGCCTA 11390 29 82.8 32 .......C.A.A.....TT.......... AGGTCATCGTCGCTGAGATGTGCGCTGCCGCT 11451 29 86.2 30 ..A....C......C........A..... ACGTGTTCGCATCAAGCTTGCCCCGCACGC 11510 29 69.0 0 T......T...AATG.T.A.......G.. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 86.6 32 GTGTTCCGCGCGCATGCGGGGATGAACCG # Left flank : ATGATCCGCAACATCGCCAGCTGGGCCGTCCCCATCGCGCTGCTCGTCGGCGCGAGCGGGTGGCTGTACATGGAAGCCAACGCCGTCCCCGGCGAATGGGACCGCTACGGCGCCGTGAGCGAACGCGTGAAGATCGGCGAAGTCACCGCGCGCCACGCCTCCGGCAGCGGCTCAGAAGTGACCACTTTTTCGCAGGGTTCGCAATGGGTCGTGCAGGGTCTCGTGGCCACGCTGCCCGGCGCCAGCTTCGAGCGCGTGACGCGGCCCTTGGCGACGCTGGTGTGCGTGCAGGCGACGGATCGGTGCTGGCAGGCCGCGCCGGTGGAGGGGGTGCAGGTGTGGTTGGGGGCTGAGTAGGGAAACGCAGGATCGTTTGGGGTGCTAGAGGCACTCACCTGAAGTCCCAAATCGAGACGGGTTTTTGCTCTTTTACAATCTGAAAAATCGGTAGAATTTTTGGTGGTGGTTTTTCTTTTTAGAATCAGTAGGTTGTTGGAAGT # Right flank : GCTCGACAGGCGATGAGCGGTCTCAATGCCGGCGCGGAGTGGGCACTAGGCGAGGAATGTTTCCCTCGCAAAGCCGCGTCCTAGTCATGACTCGCTCCTGACGCGCAGTGTGTTTCGCGCACGCGGGCAACGCCTCGCTACGCGGGCTCGTGTTCTTTCAACCAGTCTCGCAGTGCGTCGTCCATACGCCCTTGCCAGCCTGGGCCCGACGCTCTAAATGAGTCGAGCACGTCCGGCGATAGCCTGATGGTGATGCGCTCTTTCGTCGGTGCCTTCTGTGGGCCACGTCCGCGTATGCCCAGCTTGGCCTGCAGGGTGGCAGAAAGGACGTCAGCTGCCGGACGTGCGCGGCGGAATGTCGCTTCTGTCCATTCAGGGTTTTCGTCGTCAACCATCTCTGGGTTGGGCGTTCTGAGATCAAGCTTTTTCATATCGAGCTACCTCGCGAGCATTGGCTTTACGTAGGCTGATGACGCGTAGCGACACTTCACGTGCTGTGA # Questionable array : NO Score: 3.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.33, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCGCGCGCATGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCATACGCGGGGATGAACCGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21131-21708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNH010000030.1 Achromobacter sp. GG226 NODE_30_length_48621_cov_201.294764, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21131 29 100.0 32 ............................. GATATGTGCTGACATAGTAGCCACGCGTGTAA 21192 29 100.0 32 ............................. AGAAGAGAACCATGGTCATCACGATGTCATCG 21253 29 100.0 32 ............................. GTAGGACATTTCCTCATCGGTGATCGACCCAT 21314 29 100.0 33 ............................. TAGGGACATACACGGGGAAATTCATGGCTAACT 21376 29 100.0 32 ............................. GCTCCGAAGCCGGAGACGGACTGGTGGGCGGT 21437 29 100.0 32 ............................. CAGGCCAAGGCCACGAAGCGCACAGTGGATCT 21498 29 100.0 32 ............................. GGTGGAAAGGCGGCCAAGAACTACCGGCGCAT 21559 29 89.7 32 ..............T.......A...G.. GTGTTGCGCACCTTGCCGATGGTCAGCTCGTT 21620 28 96.6 32 .............-............... GACAAGTGCCTGAAGCTATGCACGAAGCTGGA 21680 29 79.3 0 ...........AA..CT.........A.A | ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.6 32 GTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : ACGCGCATCATTCCTGCTATCGAAGAGGTGCTGAGCGCGGGGGGTATCGACCCACCAGCGGCACCGCCAGAGTCTGTCCCCCCGGCGATTCCCAATCCCGAGATCATTGGCGATGTCGGTCACCGGGCACAGTAGATGAGTTTCCTGGTTGTCGTGACAGAGAACGTGCCACCGCGATTGCGCGGTCGCATGGCCATCTGGTTGCTCGAAGTGCGGGCCGGTGTTTACATCGGCGACGTTTCCAAGCGGACCCGTGAAATGATCTGGGAACAGTTGAGTGCGGGGTATGAGGACGGTAATGTCGTCATGGCGTGGGCGAGTCCTCACGAGTCTGGCTATGAGTTCCAGACGCTGGGAGCAAACCGACGACTGCCGATTGAGTTTGACGGACTTCAGCTGGTGGCGTTTTACCCTCTTGACAAACGCGATCTTTAACAAGCGGAATCGGTAGATTTTTAGGGGTGAATTTTTCCCTTAAGATTCAGTGGTTTGTGTTAAGT # Right flank : ATCAGATCTCCGAGAAGGGCTTGACCGGGCCATTCCGCTGTGAAAGCGCTCTGCTAGTTGATCGCTCGAACCGCTCTGAAGCGCTCACCGCAAGTTCTGATGCCAATCCTTCCAGGCTCGCGCAATATCGCAACGTCCAATGCCTCCCGCGAGCATCCCCCACAGCAATGCGCGCGCTTTGCGCGGACACAGCCAGCCGGCCATGATGGCGCCTCGGCGTGCCAAGTCTACCTCTGAGCCAATGTACCCATACGTGGCTGAGGTAGTGGGGCCCGCACCAGTGCGCGTCGCAATGATTACCGGCATGTCAGCGCATAGCGCTTCCATTCTTTCTGCGAAGCCGAAGGAGAGATGGCCTGCGCCGAAGCCTCCAATCACGAGGCCCTGATAGCCTGCCGCGCGCACGAGCTCGGCGATCTGCCCGTCGTCGCCCATGTACGTTTCGAGCAATGCCACGCGGACGTCGCCAGACACCGGCGGGAGCGCAGGGGGGCGGGTGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23039-23372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNH010000030.1 Achromobacter sp. GG226 NODE_30_length_48621_cov_201.294764, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23039 29 100.0 32 ............................. ACGGAATCTGTCGCTATCTCTCGTGCGGATGA 23100 29 100.0 32 ............................. GCGGTTTGTAGCCCCACCACATCGGTGCGAGA 23161 29 100.0 32 ............................. CCTTCGGCTTGGGTTCCGCAGGTAGCGCCGAG 23222 29 100.0 32 ............................. AACTGCCGCCAGGCTTCCATGCCATCAGCCTG 23283 29 100.0 32 ............................. TAGTGGGGCTCGATGCGGGTCTTGGGTCCGCG 23344 29 93.1 0 A...........T................ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : GACACCTGCTGCGCCGGCATCCACCTGCCGCTCCGCCCAAGCCAAGGCGGCGAGCAGATTCGGGAAGCTGAGCGATGCGCTGGGCAGCTGGAACAAGGACTCTGCCGAGATATTGGCGACCTCAGAGAGCCCCGGCACGCTGGCGGCGAGTTGCTCGGCCGACAAACGGGGAACGACACCACCGGCGGCTGCGTCTGGCGTCATGCTGATGGTGCCGCCCAAAGAGGCGATGGCAATGCGAGGGAGTGTCATGGCGGTTTGCGACTGCTGACGTGGATCGGAGGGCTGACCCACGGGAAGATGGTTGCGCCTAGCTCGGTCAGCTGCGGGTGCTCCGTGGCGCGCAAGGGGGAGCACAGTCTAAGCGAAATTGTGAGGTGGGATTAAGGTAGCCACGGCGGGGTCCTGCAGTAGATACAAACGGCTCAGTTACATTTGGCAAGTTTGGTAGAATTTTGGGTGCTGATTTTATTCTTTAAAATCAACGTTTTGGGCTAAAT # Right flank : GTTGGATGGGGTGAAGTCATGGTGGGAGGCGGGGCATTCCCTGCGCACGCAGGGGGCAACCCTTTGCACAGCGGTGCTTGAAGGACCGCGGCATCAAAACGCACCACCACGATGAATGTAGGATCATTAAATCCCACCCCCATCCCAACGTCCGGAACGATGGCGCTGCGCTCGGCATTGTACATTTGGCTTTGCGCGCCACTCGACCGTCACCCCATGCCCACGCTCGCCCACCTCTACCGCTACCCTGTCAAAGGCCTCTCCCCAGAGCCTCTCCATGACGTCACTCTCCAGCCCGGCGACGGCTTCCCGCTCGATCGGCGGCTGGCCATTACCAACGGCGCCTGGACGTTCGATGCGGCCACCTATCAGCCCCTGCGCAAGACGTCCTTCGTGACGCTCATGCAGCATGAGCGGCTGGCCGCGTTGCACACGCGGCTGCTGGAGGAGGGAACAAAGCTGGAGGTCAAGGCGCCGGACGGTGGCAGCGTTACGGTGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 26698-26864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNH010000030.1 Achromobacter sp. GG226 NODE_30_length_48621_cov_201.294764, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 26698 33 100.0 33 ................................. TGGTGGTTCCAGGTCAGGCGTAGCGCAGCATGA 26764 33 100.0 35 ................................. GCGCGCTCGGCGCTGACCCCAGGCTTCGACGTTCG 26832 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 100.0 39 GTCGCACCCCACGCGGGTGCGTGGATTGAAGCA # Left flank : GCCCGGCCTGGATCGCCTGATCCGCGCAGGCTTCAAGCTGCTGGGCCTGCAGACCTACTTCACCGCAGGCGTGAAGGAAGTGCGCGCGTGGACGGTGCGCGTGGGCGCAACAGCCCCGCAGGCCGCCGGTGTCATCCACACCGATTTCGAGCGCGGCTTCATTCGCGCGCAGACGATCGCGTATGACGACTTCGTTCAGTTCAAGGGCGAAGCGGGTGCGAAGGAAGCGGGCAAGATGCGCGCCGAAGGCAAGGAATACATCGTGCAGGACGGCGACGTGATGAACTTCCTGTTCAACGTCTAAGGTTCTTCTCGCGATAGCCCTGCGCGTAGGCTTCGTTCTAGCTGGGCATTGACGGCGGGTGACGAAGGTCACCCGCCGTTTTCGCTGGGGCTTGCTGCGAACCGGAAGTGGCCACTGGTTTTCTTAGTAGAGGTTCGCATTTTTCTAAGGGGTTGATTTCAAAAGAACTTTCCTTGGAAAGCCATGTGCTTGAGGG # Right flank : ACGCCTGGAGGAGGGCGACCCCATGCAGTTGAGCACGTCGCACACCACGCGGTGGCACGACTGGCGTGCTGTCATCGGTTGTAAACGCCTAGTCCTGCAAAAACAGCCTACTTCCCCCGCGCCTGCGCAAACACGATGAGCGACACGATCCCCCAGAACACCAGGTACTCGATGCCGCCACCGGACCAGGCCCAGCCCCAGCCGCCCACGGCGACGATGGCGTAGGCGGCGACGGCCATGATGAGGGCGGAGCCCAGGGCGGCGTATCGGGTGAAGACGCCGAAGATCAGGGCGAGGGCGACGGCGAGCTCGGCGACGCCGGCCAGCACGACGAACGCGTTACCGGGCTGCAGGCCGGCCTTGGCGAAGAAGCCGGCGGCGTTGTCGAAGCCGACGATCTTGCCGTACACGTGGGGCAGGTACCAGGCACCGATGAGGATGCGCAGGAGGGTGGCGGGAAGCTGACGCTGGGGCGCTGAAAAATAGGTGGACATGGCTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //