Array 1 947438-948747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045947.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00010530 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 947438 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 947499 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 947560 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 947621 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 947682 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 947743 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 947804 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 947865 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 947926 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 947987 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948048 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948109 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 948170 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 948232 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 948293 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 948354 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 948415 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 948476 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 948537 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 948598 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 948659 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 948720 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 964879-966843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045947.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00010530 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 964879 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 964940 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965001 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965062 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965123 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 965184 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 965245 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 965307 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 965368 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 965429 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 965490 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 965551 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 965612 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 965673 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 965734 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 965795 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 965856 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 965917 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 965978 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966039 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966100 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 966162 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 966265 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 966326 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 966387 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 966448 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 966509 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 966570 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 966631 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 966692 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 966753 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 966814 29 96.6 0 A............................ | A [966840] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //