Array 1 513690-509070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083583.1 Kovacikia sp. CCNU0001 plasmid pA, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 513689 37 100.0 34 ..................................... GTTGAGTTCACCCAGCAGTTACGGGCGCTAGAGG 513618 37 100.0 35 ..................................... CTAAGCTCTATACGAAGACAGCCGCAAGATTTTGC 513546 37 100.0 38 ..................................... GATACCGCTTCCGGCTGATAACGTGCTGAATCCACTTC 513471 37 100.0 34 ..................................... GGGTGAAGGGACCCGACTTCTGAGGGTTGAAGGT 513400 37 100.0 38 ..................................... TGGATAACAGGTAGATGCAACCAAACAGCAGCAGGGGG 513325 37 100.0 35 ..................................... TTTCTTCTGGTTTTTCCGGGTGGATAACTGAGTTT 513253 37 100.0 38 ..................................... AGCAATCTCACTAGACAATGCCCCCATCAGCCCATCGT 513178 37 100.0 35 ..................................... CAGTTAGCGGCAGTGGGACGATCGTATTTGACGAG 513106 37 100.0 35 ..................................... AGCATTCTTTACTCTGCCAGCAACAGCAAACCATT 513034 37 100.0 36 ..................................... GGCAGGGAAGAGGATCTCATCTTCATCAGGATGAAC 512961 37 97.3 34 ........C............................ CAAAACCGAATCTTTTAGCCCGGTGAACCAATCC 512890 37 100.0 35 ..................................... CCTACTCGATACTTAACACCACCACCTGTCGCGGT 512818 37 100.0 36 ..................................... CAAATCAAGCAGCAACAGCAGTTGATCGAGGATCGA 512745 37 100.0 34 ..................................... TTCTGGATTACCTTTGTCCACTTGTCGGTCACGA 512674 37 100.0 35 ..................................... GCTTAACAAAACAATTGCCTGACTACCCGGAAAAA 512602 37 100.0 34 ..................................... ATAAAGCCCTGCGCGCCATTTATCGTCAGCTTCA 512531 37 100.0 35 ..................................... TCTGCGATCCTCAAGTTCTGCAAGGATTTCATCTT 512459 37 100.0 35 ..................................... GTATCGACACCTTCAATGCCATCTTTTTCCAGTGT 512387 37 100.0 35 ..................................... GTGTCGGTATGGGAGACCTGCCCAATAAATCTGGG 512315 37 100.0 35 ..................................... AGATAATATTCAACGAAAGGCGGATGAGCTAAGAA 512243 37 97.3 34 .C................................... TGGAAGACTTTATACTTCCGCCCTTCATCCTCAA 512172 37 100.0 35 ..................................... AGGAATGCCAGCCTGGTCAAACGCACAACGATAAT 512100 37 100.0 36 ..................................... TTGATTTTACTAATTCTCCAGTCGCACCCGCCTGCG 512027 37 100.0 36 ..................................... GGGCTAAAGCAAGACGTATTGTAGCGCGAGTGCATG 511954 37 100.0 34 ..................................... ATGGAAAGTTCCGAACCGACAAATGTTTTTGAAT 511883 37 100.0 35 ..................................... ATCGGTTTGTCGCGCCCGTCGCTGTTTAGCCGCTT 511811 37 100.0 36 ..................................... TTGATTATTTGGAGAATCAAATGGTTCAACTATTTC 511738 37 100.0 39 ..................................... TTGCTCAATTTGGTCTAGTGTCGCTTCAGGGGTTTTTCC 511662 37 100.0 35 ..................................... AAACATTTCATCGCTGTTCATCGACTTCTGCCGCC 511590 37 100.0 36 ..................................... TTTTCCCGGCAAGCCGATACCCGCATTTCTTGAGTA 511517 37 100.0 35 ..................................... TCTACCCTACCTTCTGCAACTCCTCACATACCGCT 511445 37 100.0 35 ..................................... ATCCCCGACAAGGTTGATGATTATTTTGGATTTGG 511373 37 100.0 36 ..................................... AAAACCGAAGGGGAAGAATATAAAGGTGGGTTTAAG 511300 37 100.0 39 ..................................... TGATCCGCAAGGAAATTCGCAATCGTCAGGGGGAGATGC 511224 37 100.0 37 ..................................... TACCGTTAATCAGTCTTATATTGGTTCGATCTAAACC 511150 37 100.0 35 ..................................... AGACTAAAACAGGGGTCGATCACTCACTGGGGATA 511078 37 100.0 35 ..................................... CCAGCTCTACCTGTGCTTCAGCCTTCAAGCCGGAA 511006 37 100.0 34 ..................................... TAGAACTCCTGACAGGTGCCGTCAACCTATTAAG 510935 37 100.0 36 ..................................... AAAAGTGGAACGGCTGAACCTCGATGGTATTTAGGT 510862 37 100.0 37 ..................................... CGCGATCTGATGGATGGAAAGCCCCCACCAAACAGAT 510788 37 100.0 35 ..................................... CTCCCATACCTCAACGTTCAAGTCTGAAGAAGACT 510716 37 100.0 35 ..................................... ACGTGAAAAAACTCTGTGTGTCAGAAGCTCTGGGG 510644 37 100.0 35 ..................................... GATATAAAGCCCTGCGCGCCATTTATCTGATTCAG 510572 37 100.0 35 ..................................... CTGCTACGGTCGGTCGTATATTTTTGGCAATGTAC 510500 37 100.0 35 ..................................... CTAGTTACTATCCATTCAACAAAATTTTTGCTAAC 510428 37 100.0 40 ..................................... CGGGCTGCCTGAATTATTGGCAAGCGTCAACCCTTCTAAG 510351 37 100.0 36 ..................................... AGAAGCGTTCGACATACGGCAACTGAAAGTATCCCC 510278 37 100.0 36 ..................................... TCGTTTTGAAAGCTATAACGAGTACTTTCAAAATCC 510205 37 100.0 35 ..................................... TTGAAACAGACGGCCTAGGTGCTTTGCCCGCTCCG 510133 37 100.0 37 ..................................... CTTTTTAGTTTCCGGGTACGGATGCTCAAAGTTGAGC 510059 37 100.0 35 ..................................... TTCAATCGGAATCTCGACCGGGATAATCGGAACGG 509987 37 97.3 35 ....................................T AGGCCTGACGTAGACATAAACGTAAACTTTCCGAT 509915 37 100.0 34 ..................................... GACTGTGCTGTAAAGCTTGCGAGCCGATAGTGAT 509844 37 100.0 40 ..................................... TCTAACAAACCTACCTGTATCGCAAAGTGGAACGTGGAAC 509767 37 100.0 37 ..................................... AGGCAGTACCGAGTGAGTACCTGTACCTGATGAGGTG 509693 37 100.0 38 ..................................... AAGGATACCGACAAACCTTTAGAGGTTGGCGTTATCTC 509618 37 100.0 38 ..................................... CACTTCTGGGTTGTTCGTCGATCGCCATTGATGCGGGA 509543 37 100.0 37 ..................................... ATCAGGTAAAAGTACTTCAGGGGTGATGGTTTCTGAA 509469 37 100.0 35 ..................................... CCGCTTGAGCAACGGGTTCAGTGGATGGACGAATG 509397 37 100.0 36 ..................................... TTGATTTCAACCGTCTGATTTTTGAGGAATGCGCGA 509324 37 100.0 38 ..................................... GATGAAGAATCGCAGGAGGGGAGATGGGAGTGCCAGGT 509249 37 100.0 34 ..................................... TGCCAAGTCTGGGTTAAACAAATCTTGGAATGAC 509178 37 100.0 35 ..................................... TTCTGATTTCTGCTCAAGACCCATCGACCACAACC 509106 37 86.5 0 ...............G..............A.C..TG | ========== ====== ====== ====== ===================================== ======================================== ================== 64 37 99.7 36 GTCACAAAACCCCTAAATCCCTCACAGGGATTGAAAC # Left flank : AGAATCGTCTTCCCGGCTGCTGCCATCACCTGATGTCTCGTTGCGGTCTCAAAATTGACGGTTGGTCGAGCCATTGTTTTGCCCCTTTTCGCTCGTGTCAATAACCCCACTCTGCCAAATAGCTGACACAAACAATATGAGCTACCTCATAACTGAGAGGAGAGGGTGGGCAGTTTTCATGGCTGCTATGCCAAAATTGAAGGCATTGGGGGAGAGCCAGTTCGGGATGATTCGATCTTTTTGGTTTGATGCGCGGATGGGGAGGTGTTTGTGAACAAAACCCAGTTTGAACCGCTTGATCACCTGATAAATCAGGACTTACAGCGATCGTGGAGCGAATCTCGATCCGCGCAAGTGCTCAAACGGTTACCCGGATTAGAATCTGGCTTAAATCCTTTGGTCAGCTTCTTGAAGTCTCACGGGTATAAATGCTATGATCAAACCGATCCGCGCTATTGAACCTTGAAAACCACATATATCCATACTTCCAGGTTCCCGCC # Right flank : AACCCCGCTGCAAGCAGACGGGGTATGGAATAGGATCTGCTGCCGAACCTGAAGCTTCGGATTGCAGTTTGTCTTCTTCGCCGCAGAGCGGCGGGGAATCTACCCCTACTAGATTGAAACAAGCTGCATATTAACCTGGCAATATTTGATCTAGCATGAGCTGTAGGGTGCTGTTAGGCATCGCCGTAACGCACCGAGGCGTGGGTTAGCGGTGCGTTACGCTGTCGCTCACAGCACCCTACGCAATCATGGCGCAATTCCAAAATATGTAGGAAAAAAAGCTGCCGGGTTAATAGTTTATCCGATCGCGGTGTTCTGGTTTGTGTGTATCTTGATTTAGTTTCCTGTGTGCCCTATGCAATCCACCCCAAGTTTGATGCCATGATCCCACCCGATCTGTTTTATTAGAGCAAAGTTGGGACTGGACAATGGAGTATGATTCTGGTCGAGAAAACGCTACTCGTGAAACACAAACAATTCTCACCAGGCAACCTTTAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAAACCCCTAAATCCCTCACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 566329-567448 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083583.1 Kovacikia sp. CCNU0001 plasmid pA, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 566329 37 100.0 35 ..................................... CTGGCTCTCTCACGAAATCAGCCAGAATTTTGGAA 566401 37 100.0 34 ..................................... TACGAATCGCAGTTGATTTGTCGCCGCCGTAGAC 566472 37 100.0 37 ..................................... GCCCACCAATTACCGTTTCCAAATCCCATTTGCTGCG 566546 37 97.3 34 .G................................... TGTACCTAAGTCAATCTCCGTCGGGTCCAATTTC 566617 37 100.0 35 ..................................... AACACTGAACCTACATGGTTGTCAGGCTATCCTCT 566689 37 100.0 36 ..................................... TCAAGAATCGGCAAATAAGCAGCGATCGCCTTGGAA 566762 37 100.0 37 ..................................... AAAGTTATTTTAGCCGATGTTGAAACATCAACGTCGG 566836 37 100.0 34 ..................................... TTGCTGATAATCTCCTTGAGTTGTGGATACTCTC 566907 37 100.0 36 ..................................... CATCTAGCGCGTAGGTGTCAACCTGGCGAGGAAACG 566980 37 100.0 34 ..................................... CATGTACCCACATTCTTTCCAAGCTCTCAAATAT 567051 37 100.0 35 ..................................... TTGCCCAATCACTTATTGCGGCTCTTGCCTCAGCT 567123 37 100.0 37 ..................................... TGAAATAACTGCTTCTGGTTGCACTTCACGCGGCCAA 567197 37 100.0 35 ..................................... ACATTGCAATAGCAGCTTATCGACATCCATTCGGG 567269 37 100.0 35 ..................................... TTATGACCAACTGGTGTCGCACCCATTTTGGAAAG 567341 37 100.0 34 ..................................... ATAGAATCCGGTAGCAAGCCCAGGCTGAATATCA 567412 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 99.8 35 GTCACAAAACCCCTAAATCCCTCACAGGGATTGAAAC # Left flank : ATCTCTGAAGATAAAAGACGCACAAAGGTTCATAAGATTCTGAAGTCTTACGGACAGTGGATGCAGTACAGTGTGTTTGAATGTGATTTAACGGAAACGCAATATGCCAAGTTGCGATCGCGTCTCAACAAGCTGATCAAACCAGATCAAGATAGCGTTCGCTTCTATTTTTTGTGTGCCTGCTGCTATGCCAAAGTTGAACGCATTGGGGGAGAGCACGTTCGGGATGATTCGATCTTTTTGGTTTGAGGCGCGGATGGGGAGGTGTTTGTGAACAAAACCCAGTTTGAACCGCTTGATCACCTGATAAGTCGGCACTTACAGCGATCGTGGAGTGAATCTCGATCCGCGCAAGTGCTCAAACGGTTACCCGGATTAGAATCTGGCTTAAATCCTTTGGTCAGCTTCTTGAAGTCTCACGGGGATAAATGCTATGATCAAACCGATCCGCGCTATTGAACCTTGAAAACCACATATATCCATACTTCCAGGTTCCCGCC # Right flank : CGGAGCAAACTAAGGATGCTGGATCAGTCGCTTCAAGAGTGGTTGGAACGGTTGAAGCAAAAGGTTGAAGCCGCTACCTAATTATGCTTGGAACGGGCTGGAGAACGGTGATTGATGGATTGCTCACCAGGGCTGACCTTGATGGAGCAGCACAGCAGAATTGAACGATCGCGTTACGCTTAAACCGATCGATATTAGAAGGCTGCTAACAGAACTCACTGAAATTCTAGGGTTTTGGCTTTACCGCTTTGTGTACGCAATTAACGAAACACCCAAAAACACAATGACAACTCCGGCAACTCGTGCTGGGCTTGCAGGATATTTTGCTAACCCGATCGCCCCGAAGTGATCTAGAAACAGTGCCGCAACCATCTGCCCTGCAAACGTTAGCGCCAGCGTCAGTGTGGCTCCAATTTTCAACGTGGCGACAATGGTTGACCAAACATACAACGTGCCCAAACACCCGCCCGTCCACATCCACCAAGAGGTTTGAGAAAGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAAACCCCTAAATCCCTCACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 1781146-1782389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083582.1 Kovacikia sp. CCNU0001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 1781146 35 100.0 42 ................................... CATCTTTAGGCTTCTCACTGTAAAGCTCAGCTACAACATAGC 1781223 35 100.0 40 ................................... ATGCAGATCAAAAGCCAACTGAAGGGCTTTTGAAAACCGT 1781298 35 100.0 43 ................................... TATTCTGAGGTCTGGTTTGGTACTTAAAGCCAATTGAAAAGTT 1781376 35 100.0 41 ................................... CAGGCTGTTAAGTGGACTATCGATCGCCTGTTTGATTTCAG 1781452 35 100.0 39 ................................... GTGTTGGCGGACTTTGAAATTCGCGGTTTACCAGGCATT 1781526 35 100.0 38 ................................... AAATAACTAAAGAACCAACGAAAAGTAATGATTGATGC 1781599 35 100.0 41 ................................... ATTGCGATGGGACTCCTTGGAGTCGGAGAGTTCCTGTTAGT 1781675 35 100.0 40 ................................... TTGAAAAAGAAAAGGAGCGCCAGGAGGTGTTATGAAAGAA 1781750 35 100.0 39 ................................... CTTCTCCCCAACCTCGATCATCCCCAATAAGTACTAATA 1781824 35 100.0 42 ................................... TCATTAATGCAATGCCCCGTTGCATCATGCTCTCGCGTCTGC 1781901 35 100.0 38 ................................... AACAATGGACAGAAATTACCCGATAGGAAAATCCCCAT 1781974 35 100.0 38 ................................... CCTGCCTACCAGAATGGCATGATCCGGTTCAGAGTAGA 1782047 35 97.1 42 .....G............................. TCGAAATCCGGCGTTTTAGAGACTTCAAAATACGCCTTGAAG 1782124 35 100.0 41 ................................... ACGTTCAGTGATCCAAAAACCTTGTTAACGAACTTCCACAT 1782200 35 94.3 43 .......T.T......................... CTCCTCCGGGTCATCATAGGGAATGCCATCGATCGTGATCACA 1782278 35 100.0 42 ................................... CGTAGGTGTAGAGAATGTCCCACGCTTCCCGGATAACGTCTG 1782355 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 17 35 99.5 41 CTTTCAAACCCTCTTCCCCGCAAGGGGACGGAAAC # Left flank : GGAGGAAGGATGAGGGATAAAGTCAAAGGTAGTAGCATCAAGGCTCCTGGGTTCGCTACTTGTCCTAACCTACCTAGGTACTGCTATAGCTCAGATCTGTTGTCTCCATCCCCTGGGATCAGTGGATCGGTGGATGGGAGTTGAGTGCAGGAAGCTCAGGCAAGTCGCAACCGCTGTCAGTCACCGATCGCTGCCCAAAGAAACACTCCTACACCCCTCACCCCTCACCCCTTCACCCAAAAATGTTACATAACTTAAAGCTGGCGTATTCCAAGGATTTTTAAGGCTATCCTAATTTTGTATCGTTCCATCGACACACCCACCCTGAACCTTGAAAACCGCATTATTCCGTCGAGGTGCGTCGATGGCTTGCCAGATAAGGATTCCAGCCCGAATTCACGAAGGCTTCTTGCGAAAAATAGAAGCTTATTGACAATGATTCGGAGGTGTGTCGATTTGATCGCCCAATCCCGCTCCCGGTAAGCCATCCCAGACCACCC # Right flank : CTCTACGCACTTTAAAAACTGACCAAAGCTCTTTAGAATTATGAGTTAGCGGTGCGTTACGGCGATGCCTGACAGCACCCTACAGCTCATGCAAGATCAAGTATTGCCAGGTTAATCTATTCCAGGTTCGATTGTTTCGTGGCAAAAACAGCGGAACCATTGGGCGAGAAGCATTCTACAGGGCGACTGCTGGGACGAACCCAGTAATTGGGGCAGTCTTGGGCTGTGGCAGGGGAGGGGAAGAGGGGAAGACGATCGCTGATGTCCCGTCAGCGGCAACAGGCATCGATATTTCATGGAATTAATGCTGCAACTCTTCCTCAGGTGTGTTCAGGCGGAAAAGGCGCATACCAGGGCTATAGGTTTTCGCGTCCCCGCAGGTAGTTAGCAACCAATATACGAAGCTCCTCTAGCCCTGCGGTAAAGTTAGTAAAGTTTTGGGCGATGAGTGCTTGTTGCGACCGGATTGCTGCCATTTCCTGATCATGCTGAGCGATCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCCTCTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2589528-2589177 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083582.1 Kovacikia sp. CCNU0001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================== ================== 2589527 37 100.0 37 ..................................... TTTAACTACCTGTTACACCTCGGCGGACGATCGCAAA 2589453 37 100.0 36 ..................................... CCTGCGTTCAGTCATGACGCGAATTGATCTACATGG 2589380 37 100.0 35 ..................................... AGGCACTTCCAGGCATCCCGGCAGCAACGTGATAC 2589308 37 100.0 58 ..................................... CGCTGGTGTTCTGCCGTTGCCAAAATCGACGTATTCGACAAGGTGCTTTGCGGCAGCG 2589213 37 97.3 0 ....C................................ | ========== ====== ====== ====== ===================================== ========================================================== ================== 5 37 99.5 42 GTTGTACAGCACCTCTCCCGGTTTACGGGACTGAAAG # Left flank : GCTGGAATACTTTTGCTCCCAAAGACTTACGATTTCCCAAAATTCAGTGGGATGGATTGATCTGTGATTATGAACTGAAAACCCAGAAACTAAGAATGGAAAACTCCGCTGAATTAGGGTTTGTTGGCTGGGTCAAGTATCAATTTCCTGACCCAGAACAAAGCAGAGTCGCAACCGTTCTATCCCATTTCTCTTTGTTTGCCGGTGTCGGACGTAAAACAGCGATGGGAATGGGACAAACTGTTTTTGAAAGGTAAGTAAAAGACTCTTATGTAACTTGTGAACAACATCAGACATTTCTGGCAAACCCAAGCAAGGTCAAAAAGCCTGGGAGGTTTGCCAAAACAGTTAAGATCCTTGAAGTTCAATGCTTTTACTGATTTTTATTGATAGAAATATAAATAGCAACGTCAAATCTTAGAAGCCAATCCGAGATTTCTGAACAGGTTTGCCAAAATTATGCTCAGAAGTCCTGATATATAAGCTTTTCCAGGTGAAGA # Right flank : GAGTAGATCATCTTCAGTCCGAACAATGGCAAGGATGCAAGCATCACTCTATATCGCCTTGGGATCTCATCAGGGCGCTTACAAGTCCTAAGTAATGTCGAGATAATCGACGATTAGGCCATTTTGATGGTGCAAAAAAAGTTAGCCAGTAACCTCCTGGAAAAATCGAATTGAGGCATTGCAGGCGATCGCCAAAAGGGTTCGAGAAGCCGCGATCTACTTAAGACAGTTAAAAAGTGCTGAGGCTTAGTCCTCATCCTCATCTCCTAAGAGCTTTCCAAGATTGTGCGTCTCCATTAATTCCCTATATTTCTGAGGGAGACCTTCCCTAAGTGTGTCCTCAACGATACGACTAACCGTTTGATCGCTTAGACCAGATAGCGTCTTCAACAGCCTATCTAAGCTAGGCGTGACGTACAGGCGCAATTCGGTTTTCTTTTTCCTAGCCATCAAACGTTCTTGGTGCCTGCTCAGCTTCAGCAACCTAGCGATCGTAACCA # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.32, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACAGCACCTCTCCCGGTTTACGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 4210965-4210705 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083582.1 Kovacikia sp. CCNU0001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 4210964 38 100.0 39 ...................................... GACGTGAATTCCATGTACCAAGCCTTCGGACGAGTTGTG 4210887 38 100.0 36 ...................................... CTCAACCTAGCAGTTTACCGAGCAGAAATCACGGAA 4210813 38 97.4 34 ..................T................... TATCAAACAACCCAACCAATCGTCGAGTTTGAAG 4210741 37 78.9 0 ..T...............T.......T.C-....G.TC | ========== ====== ====== ====== ====================================== ======================================= ================== 4 38 94.1 37 GGCGCGATCGCCTTTATGGGTACGGGCAAGTTGAAAGT # Left flank : TCTAAAAAATCTGCTTAGCATTGAAATTTTTGTGTTTTCTGGTACATTAGTATCAGCGCATGAACCTGACTAGCGTCATTACGATGCGAGTTCTGGAAATGGGACAGTTTCATTGCTTTCCGTCCCTGGCACTGCCCGCTTACTCACGACCACAAGGAGACAATTCAGCGCTGTGAGTTCGCGATTCTCTACTGTTTATGACAAACTAACGTTTGTCTGGCAGTACAGCAAGATTGTGTATCAGACCAGGTTTGGCGAAGATACGTGGCAGGCTGAATCGCCAATGAAACCAGCGGACTTCCCCTAATTTTTGGCAAACCGAAGCGGGGTTCAAAATTCCGGTACCTTTGCCAAAAGGCTAAAACCCTTATCAGTTCAAAGGTTGAGTAGCATAAGTAAGTCTTCAATTCAGACTACTCTAATTTCTCTAAAACGCTGCATAACACCTTTGGCAAAACTGCTGATGAAACTCAAGCTGATGAGAGGTTTTAGACCATAGA # Right flank : ACATTTGGCTATCTCATAAGTGCCTACGGGAAGTTGAAAGACTAAGCGTGACGATCCCAATGCTTAAGTTAGAGTCGAACTATTTCGCCAAGCTTGGGTTAGCTAAGAAACAAATTACTTTAGTTTTCAGTACGACGTCCCGATCGCACCTGTCTCCTGAGACCTAGTTGCGATCGCTTCGTGTTCCTCAGTCATTCTAACTTTTCTGTAGTAGTAAGACTCTGCTCCTTGTAGCGATCGCTTCATATCGCTCAAATATTTGCAGACCCCTGCCTCTTTCCCTTCCCCTACAAGTATTGTGAAAGATAGGCAAACCTTTTTGCTTGCCATAAGGCAAGACCTATTTCAGGGGTAAGCTAAAATTTTGGAAAAGTGGGAAGAAATAGTTTTTCAGAATTGACACGTATTCCTTCGCTGTATCTCACGAATTGACATACAATTCTTCGCCGCCTTTCACGAATTGACATGTATTTCTTCGTATACCCTACGAATTGACACGC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGCGATCGCCTTTATGGGTACGGGCAAGTTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 4652003-4650051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083582.1 Kovacikia sp. CCNU0001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 4652002 36 100.0 41 .................................... ATAAGGGATTGGGCAGCTTTGCGAATAGCGCTTAGATTGTG 4651925 36 100.0 37 .................................... TTGACGTTGACCGTTGGGACCATTGACAGACTGGTCA 4651852 36 100.0 39 .................................... AATCTCGTAGGACATATCAAACTTGCCATCGATTAAAAT 4651777 36 100.0 39 .................................... TTCTAGTCCTTTAGCACGATGAACGGTCGATAGCGTGAT 4651702 36 100.0 38 .................................... GCAAATCTCCCGACCTCTGCTCCGGAAAACCAAATCGC 4651628 36 100.0 41 .................................... TCTTTTTCCATTGCTGGAGGTGTTTTGGCTTAATGATGGTT 4651551 36 100.0 40 .................................... TATCCCCGCATAAGGCTGCTCAGTTGCGCTTGGAACATAG 4651475 36 100.0 38 .................................... TTGGAACCCTGGGAACTGTCGCGAACTGGGATTGTCAT 4651401 36 100.0 38 .................................... AATTTAAGTTGGCAAACTGCTGAATGACCGCTGGACCA 4651327 36 100.0 43 .................................... CAAAAAAGGATACATAACCCGACAAAAGCGGGATACACAACTG 4651248 36 100.0 40 .................................... GATCACCACCACGAATTGCGGATTGAACTGCCGAGCTTGA 4651172 36 100.0 45 .................................... AAGAACAGGCAAAGCAAGCGATGCAGCGAAAACACTAGAGAGCGC 4651091 36 100.0 50 .................................... TTCTGCAAATGCAGGTGCAACACTATTCCAAAGAACAAGCAAGGAAAAAG 4651005 36 100.0 41 .................................... TATTAGATACTTGCCATAGCTATTGTCATTGACAGTTGCAT 4650928 36 100.0 38 .................................... ACGCAACAACAAGAGCGGTACCAGCGATAACAACAGCA 4650854 36 100.0 38 .................................... TCAAAGTAGGTGTTTTTATCCTTACCTTGATACGTTGA 4650780 36 100.0 43 .................................... TCGCTTGTTGAGTTCGAGAAACAGCCTCCTGCGCTTTTTGCTG 4650701 36 100.0 42 .................................... TCTTGTTAATCGCCGAAACTGCAATGTCATTTGCCTGTTTAG 4650623 36 100.0 40 .................................... GATAATAGTTCGGAATCCGAACAGCGGCTACCTCTCGATG 4650547 36 100.0 41 .................................... CCTTCATATCGTTCAAACTTTCCCCATCCAATTGTTTCTGT 4650470 36 100.0 40 .................................... GTTCCCTGACCAGCAGAGGGGCGAGCGTCGCGTGCTGTGT 4650394 36 100.0 40 .................................... GTAGCTTCCTCATAGGAATTATGAGCAATACCACCTGCTA 4650318 36 100.0 38 .................................... GAATGAGGATGCGTTCATCCATCGTCCTGTTCGCAATT 4650244 36 100.0 46 .................................... ACTGGTTGCAGTTGACGGATTGTTGCGGGCTGTACTGTTGCTGGCT 4650162 36 100.0 40 .................................... CCACTAGGACCAAAGCATGTGGAAGAGTCAGCGTGTCGGT 4650086 36 94.4 0 ...............................AT... | ========== ====== ====== ====== ==================================== ================================================== ================== 26 36 99.8 41 GTTTACCGATTACCCCAAATCGGATTAGTTGGAAAC # Left flank : TTCGGCGGACAAACTGATGCTCGTCCTCGTTGTTTACGATATCCCCAATGATAAGCGACGGTTGAAGCTCGCCAATTTTCTGGAGGGCTATGGGCGAAGGGTGCAGTATTCGGTGTTTGAGTGTTTTCTGTCTCTGGAGGAAATGCGGCAGCTCCACCAGAAGGTAAAGAAAAAGGTGAAAGCAGCGGAGGACAATGTGCGTTTCTACTGGATATCGGAGAGCGCTCTTTCCCAGGTACTAACCATCGGTAGTTCTCTACCCGAAAAACCACCAGAGATTTACATTATTTAGGCTTGTTTCTGATAGAAATGAAAGCTGCCTCCACAATCGAGAGATTGGCTAAAACCCCCAAGTTTTCGTTGGATTGTGACAAATGCCCTTGGGATGAGGCTTTTAGCGGCTCTAAAAGCTTGGATTAAAAGTTAAGATAGGAGCGTATCCCGCATTGTGGAGATTTGATGCCTGAGGTTCCCTCTGGGTATGGCTCCTCCAGGGAACA # Right flank : TACAAGACCTCCGAAGTTTTGAAAACCTCGGAGGTCTGATTTGCCGATTACTTCGCTAACTTTTCTTACTAACCTTTTTTGATTCGATCTCTATAAATTTCCACTAGACTTGTTGCTTTATAAGTTTGAAAAAGCCGCGAAACCCACTCCTAGCAAAGCTTTGAGGTGATTTTTGCGATCAATGGCTATAACCTTTATGCCATAAGGCTTTCAGCGATTTTTCCTGTTAAAAAGCAACAGGTCTAGTCAATCTGATTCGCTTCGTCAGTATCCGCATCACTTCGCCTGGGTTAACGGTCGGAAGTTGTGGAGACCATTCATCGGGTTTGGCATAGCCGTATCTGAAAACGGTGATCACGAAGAGTTGTACAACCTGGGGACTGTCGATCGCCAAGACGCGCAACAAATCGGGAGAAGGGCGATCGCGTAAGTCGATCAGAGGTTGATCGCAAGGGAAATCGGTTTGACCAGATGTATTTTCTGTGATGATGGTTTCAACT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGATTACCCCAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 5 4661748-4659243 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083582.1 Kovacikia sp. CCNU0001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 4661747 36 100.0 39 .................................... TTGGAGGAGGTGTTGGAGGGGTAGCATCTGGTGCCGCAG 4661672 36 100.0 37 .................................... CCGGAAGAGATGGGAACTGCGGTTGCAGCTCTGCTGT 4661599 36 100.0 42 .................................... CTGTTCAAAAATTAAATCTGCCTTTGATGCAACCTTCTGCCT 4661521 36 100.0 47 .................................... CTGCTGAAAACAACGGGGGGCAGATTGATTTGCTATCACTTTTGGCG 4661438 36 100.0 40 .................................... CAACCGTCAGGCGATGTCCGTTGGTTACTGTGAGTGTTGT 4661362 36 100.0 41 .................................... CTAGAAAACTAAACCTGCGGCACGTCGCCTGATTTATCTGA 4661285 36 100.0 42 .................................... TCGAACGCTATATGAAACTGTGGACTCCTGAATTAATCCAGG 4661207 36 100.0 51 .................................... TTACACCATCCAACTGGCAAACGGTGCCTCAGTTTGGTCAACCGGGAACGT 4661120 36 100.0 37 .................................... CTTGATTACTGATGATAATTGCGCCATGCTGATCAAT 4661047 36 100.0 39 .................................... GCACCGGAACCTTTAGCGATTAGTTGTGAATCGGGGAAA 4660972 36 100.0 41 .................................... AATGTGATTCCGGTGAGAGCTATATCTTGGACAATACTCTG 4660895 36 100.0 43 .................................... TTCCATATCCTCAAACTCGAATGCGACGTAATTTGCATCTAAA 4660816 36 100.0 41 .................................... TTAAACTTGTGGCAGTTAGCCATAAAATCTTGCCTACCGAT 4660739 36 100.0 42 .................................... TGACAGAATGCCGCAATCTCTTCCTGTATCCCAACAACCGTT 4660661 36 100.0 38 .................................... TTGAGTCTGTAGCAAAGGTGAGGCTACCCGACTGGTCT 4660587 36 100.0 40 .................................... TCATCACTATGCCCATAACAGGCATCACCCAGAGTTTTAC 4660511 36 100.0 41 .................................... TCTACCCCCCACAAGGATCTTTCCATGGAAATTGGGCATGG 4660434 36 100.0 54 .................................... CTACCGTTGCAGCCTCCCTTGCCTTACCTTCCACATACCGTGCCCGTGTCCATG 4660344 36 100.0 36 .................................... AACTCAGCAGGGGAAAATTCAGCAAGTTGTTTTTGA 4660272 36 100.0 37 .................................... GCACTGAGCAGGCATCCGGGGGGATTGTGCATTGCTG 4660199 36 100.0 43 .................................... TTAAGGGCGTTGCTCAGGGCGGTTCGGGTGCGGCTGCTCCACA 4660120 36 100.0 39 .................................... TTGCCGCCCAATACCTGCACCGTTAAACCGGCAACCAGT 4660045 36 100.0 41 .................................... AGAAAACATTAATAGTCGCCCCCTTCCCCAAAAATGCGGAA 4659968 36 100.0 46 .................................... TTGGGGGAGACCAGGTAATTACTCCAATTCCCTCGCCAATTTCCGG 4659886 36 100.0 35 .................................... TCAACGTGCCCCTTGTGGGGCTTCATGGGAATAAA 4659815 36 100.0 38 .................................... CCGCGCTGTTTCGGCGGGTGTCTCATGTATGTCCATGT 4659741 36 100.0 41 .................................... GCCCACGGCTGCATGTTGTTATGCGCCCCGCCGCCCCCCGT 4659664 36 100.0 42 .................................... ATGGAATCTGCGCCGAAGCTTGATGGGCTTGCCTTCAGAGGT 4659586 36 100.0 45 .................................... TTACCTGATTTTAATACTGCCCAGACATTGTAGCTAATCTGGCAG 4659505 36 100.0 41 .................................... GTTACCACCGGGGATATGGCGGTTAAGACGCAGCTGTACTG 4659428 36 100.0 41 .................................... ATTGGGCCGCCAGGTGGGTGACCTGTGTCGCAATCCCATCT 4659351 36 100.0 37 .................................... TTGTCGCAAATGAAGTTATTTGTTCCTGCCGTAACTC 4659278 36 83.3 0 ............C......G.......TG...T.G. | ========== ====== ====== ====== ==================================== ====================================================== ================== 33 36 99.5 41 CTCACAACCGCCTACACAAAGGCGATCGTTGGAAAC # Left flank : TTCACATGACGTTTTTCTCTTTAAAGACTATTTCCTCATTCTGTCTACATGAACGGGTTTTGTCAATAAAAAAGAGCACTTAAATGCGTGTGATCAATGTGCGCTTCAAAATCCAAAGTGATTGAGGTTAATTCAATATCCGGGCAAGACTGATATCATAGGTTTATTACCTGCCCGACAGGTTAAAGTCGGATTGTTGGAAACATGATGGATGCTTCAATTAATTGATTCAGATGCGAATATGAGATTCTTCCAATCAAGTCTCTTTGCAGAGGAAGAGTCTCATTAGCATTTTGTAATAGCCATTTCTGATTCCCTTGTTGCGAGGGACAGCTCGATTCGTGCTAACGTGCATTTTTCCGTTTGATCCTTCGGCTGCCGATGGGGAAAGGGTTTGAACCTGAACCGGACTAAAATATGGAGCTGCCGAATGAGCTTTTAATCGATCCCTCGCAAAACCGTACTGAATGTTAGTCTAGAAGCAGGTTTCAAAAGGAACC # Right flank : TCTTTTTTCCCCTATTCAGCAGCCTGCTATCCAATGCGGGCTGCTTCTTGTTCTGATAAAAGCAACTGTTAGAAACGATAAAATGACTTGTAGTCTTTCAGAAAAAGCCGTGATGACCGCTAAAGAGAAGCTGCTGCAAGTCATAGAGCATACGCCAGAGCCATTAATTACTGAGGCATTACACTATCTTGAATATTTAATTGAAAAATATGCTGAGGAACAGGAAGAGGAAGAAGACCTGAAAGACTTAGAAGTCATCCGAGCAGAAATGGCTAATGAGGGTACAGTTCCCTGGGATAAGGTCAAACAGGAGTTAGGTTTGTGACCTACCAGGTTGCTTTGTCCAAACGGGCAGAACGCCAACTCAGCAAATTAGATGCTGATACCCAAGCTTTGATCGGTGCCGCAATTGATATTCTGACAATCGACCCTCGACCCTCTGGAGTGAAAAAACTCAAAGGCGAAGAGAACGTTTATCGTATTCGTGTGCGTGACTATCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACAACCGCCTACACAAAGGCGATCGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 5383203-5384775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083582.1 Kovacikia sp. CCNU0001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5383203 36 81.1 37 ....-.....A.TCCA..........A.......... AACGGCTGTCCCGATCCCCTCCGGCAATAATTTCTGG 5383276 37 97.3 40 ..............C...................... CTAATTCCTCCTTCGGGCGGCGCTTTCTTACCTCCATTAA 5383353 37 100.0 34 ..................................... ATCCGGTTCAACTGCTCCCAGTAGGAGCAGCAGG 5383424 37 100.0 35 ..................................... AACGATCAAGGGATGGGTGTTGTTCAAGAGTCTCT 5383496 37 100.0 42 ..................................... TCGGGAATTGTCGGTCACCCCTGCCTGTCTCAGGTGCTCGTA 5383575 37 100.0 35 ..................................... TCAATAAAGCAACTTTAGCCAATTTGACCTATAGA 5383647 37 100.0 42 ..................................... TCGGGAATTGTCGGTCACCCCTGCCTGTCTCAGGTGCTCGTA 5383726 37 100.0 36 ..................................... TCCACATACCAAAGATGATCATCACAACAAAGAGTG 5383799 37 100.0 34 ..................................... GAACCTGATAAGCTGTACGAATCCTGTTCTCAAG 5383870 37 100.0 38 ..................................... GCCGAAGCCATCTATGCTGCCTTCCCGAGCATGACTGC 5383945 37 100.0 34 ..................................... GGATTGACCGACACTGATTCCCGTCGGTACGCAT 5384016 37 100.0 37 ..................................... GAAAAGGAGATGGCGGCATGAGTTTGAAAGATATAAC 5384090 37 100.0 37 ..................................... ACATCGGGCGGCCCTATCCCCTGAAGCCCTTACCGGG 5384164 37 100.0 35 ..................................... AAGGCCCTCTGTAAAGAGGCAGGGATGTCCAATAG 5384236 37 100.0 36 ..................................... ATACCCGCGTCAACTCTTTTCGCAGCCCGACAACAG 5384309 37 100.0 34 ..................................... TTTATTCAAAAGTGGAAAGTCACGAAAAAGGGCA 5384380 37 100.0 35 ..................................... ACTATGGGTTGCTGTGCGAGAGCGGAGAAAGTATT 5384452 37 100.0 37 ..................................... AATCCCAGATATTGAGCGGTTCCCATTTCTCCTTGGG 5384526 37 100.0 34 ..................................... TTTGTCCACGCGGGGACTTCGATCAAAAAGCTTG 5384597 37 100.0 34 ..................................... CCTCCATGCCACCGAAAGACTGAGAGCTTTCGCT 5384668 37 100.0 34 ..................................... GCGGGAACTGGAGAAAACACTCAGACATCAAGGC 5384739 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 22 37 99.0 36 CTTTCAACCTGCCTTGATTAGGACAGGTGATTGCGAC # Left flank : CTTTGAGGTGCGAGAAAATGGTGAACCAGTTGATCCGGTAGCGTATCTGTAGGATTTTGAGTTTTGAGCGACAAGTGGGGGAAGTCAGGAGTCAGAACAAAGATAAAGAAGTATCCCCATCTCCCCCACCTGCCCCATCCCCTTTTTCCCTTTTCCCCTTTCCCATGTAACTATCTTCCCCATCTCCCCGTGCTATACTCACACCAGTACGAGGGCATGTAGCTCAGTGGATAGAGCATCAGGTTCCGGTCCTGAGGGTCGGGGGTTCGAATCCCTCCATGCTCGTTATGTTGTACAGTGACTAATTAAACGTCATCGGGGTCAGATTAATGTCATTTGGGACAAGTTGGTGTCGTCGAGACAAATTGATGTCGCTTAGTTGCTAGTGACAAATTAATGTCGCCAGAATAGGAATTCTTTTTTCCCTATTAGCATGAACCTGATGCTCTATCCTTTCAACCCGCTTTCTCTAATCTTTTTTTTGCTTAAAGAACCAGTAA # Right flank : CTGCAGGTTTCTAAAATCTAGACTTTGCTAGCGTTTCAGAAGGCAGTTGCGCGAATCGCGTTGCCTATCCCTTCTCCACCCCTTTGGTCTCAAGATTTAGAGATTATCTAGCAGCATGAAACCTAGATATCAAAGGAATTCGAGCCTTTGCGCGGATCGCTTCAAGAATTTACTCCCTTTGCGATCGCTGAAATGAAGAATAGAAGCGGGTTCCCCCTTGGGTGGGGGTGATTCGGTAGCCACTACAGCAGTACATCCGCGCCCTTGTTGCCGGGAGCGCACCGACGCCATAATTGAAGCAGACTAACGCATCAACTATGACTTAATCTCGTTTAAGAAACCGAAGTCTCTTATCCGACAGCATCAGGGTGAGCAGCTACCAGGGTCAGAAAGCAGAACGTCTACCGACAGTCAAACTAACCCTCATTTTGCACGAGCGTACACTGCAAGCAGCATACGTCGCGGCGCTGTTTGAATTTTATTCGGTTTTCAAGGTGCAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCTGCCTTGATTAGGACAGGTGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //