Array 1 66-1596 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRVW01000044.1 Mitsuokella sp. AF21-1AC AF21-1AC.Scaf44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66 28 100.0 32 ............................ TATGAGTTACCCCAGAGGTACGATGTAGAGAC 126 28 100.0 33 ............................ TTCTTGAGGCCGATTATGTGAATGGGTGTATTT 187 28 100.0 32 ............................ AAGAGATCCGATTGGCATAGAGAGCCCCCATG 247 28 100.0 33 ............................ ATTATCATCATATTATATTAGTATATTATGCTT 308 28 100.0 32 ............................ GCGCTTCGGGCGAATGAGGTAAATCTTATCTG 368 28 100.0 32 ............................ ATTGGGATGTCGGCGCAAACCTTTGTGACCGT 428 28 100.0 32 ............................ TATTCCGTAAATCAAGGTGAACATGCCACAAA 488 28 100.0 32 ............................ GTCACGCTTCGCATTGCTCTCGTTGATTTCCT 548 28 100.0 32 ............................ TTTATCTGTCGTGCTACCATGTACGTAACTAC 608 28 100.0 32 ............................ ATGATATTCATCTTGTTGAGCAACCGGATGAT 668 28 100.0 33 ............................ ATCTCGCTTCGCATTGCTCTCGTTGATTTCCTT 729 28 100.0 32 ............................ AAGAAGAAGGTAGCTTATCTCCTGTGGGGTAA 789 28 100.0 32 ............................ ATACTAAAATAGTCCGTCACAATGTCGCGGGC 849 28 100.0 32 ............................ TGCACACAGAACGGCACAGTCGGCAATGATTT 909 28 100.0 32 ............................ TCAAAAGAAAGGATACCATATGATGACAGCAA 969 28 100.0 32 ............................ TGGAGCTGATCCTATATGGCAAATCGAATACG 1029 28 100.0 32 ............................ ATAACACCCGTGCCCACGGAATGGGCAACAGG 1089 28 100.0 32 ............................ TGTTTGCCGTTTTGCCAGACATTGAAAGACGA 1149 28 100.0 32 ............................ GTCGAATATGGTCTGAAATACGGTGTGTACTA 1209 28 100.0 32 ............................ AAAAGCTCACGCGACGGGCATTGCAGGCAATG 1269 28 100.0 32 ............................ GAAAAATATTTAGCCATTTTTAACTTCCTTTC 1329 28 100.0 32 ............................ AAAAGTATCCATAAGCCCGACGCGATAATACA 1389 28 100.0 32 ............................ TCTTGCTGACTTGTAATCATCAGATTACTAAT 1449 28 100.0 32 ............................ GACAAGATTCTTTTTTATATCTTTGCTATATC 1509 28 100.0 32 ............................ TTGCCAAGCACCTCATTTTGCCAGGCACGTAT 1569 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTAAAAATAAATCAGTGTTTTAGTAACTGCGAAGTTTGAGTCAATAACTAACAGTGTTTTTAATAG # Right flank : AAGGACGGTCATCGCGATGCGCGTATCATAGTGTAAGCGCTAAATTATCCGGTGTATAATCTGCCAGCCTGATGGCTAAAATTTTCGTCATCACTGAAATGCGCATCAAAAAGCGCTGCTGTGCGAGCAAGGAAATTTGGATGGTTCATTTGCAGTTTCACTGGATTGTCTCATTCCATGGCAGGACGTCGTCGAGGTACTCGGGATGCTGCTGGATGTCGGCGTTTGGCAGGTGCTCGAAGAGGTATTGGAACGGATTCAGGCCGTTGGCCTTGGCTCCTTTCAGAGAGTCGCTGAACAACCAGTTCTTGCGCCCCTTCTCTTTGTGGACCTGTACGGGTGTCTCATCTGCATGGATGACATCCTGCTCGAGGAGGTCCTGCTGCAGTCGCGAGACGAGCGGCATGGCCGGCTTCTCGATGGAGAAATGCTCTTCCTTGCGGCAAGCGAGGCACTGGAAGGATTTGCGGCAGTAGTCGATGACCTTAATCTTGGCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8893-10542 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRVW01000044.1 Mitsuokella sp. AF21-1AC AF21-1AC.Scaf44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 8893 23 100.0 48 ....................... GGATAATTCATTTCTTCACAGTAATAATTATTCCAAATTTGAAACCAA 8964 23 100.0 47 ....................... GTGCTCGCCACGATAAGTAATGACGTGCTTCACGTATTTGAAACCAA 9034 23 100.0 54 ....................... AATCAGGATGGAACTGCTGCTTCTGATGCAGATAAAAAATTTATTTGAAACCAA 9111 23 100.0 52 ....................... GGCGTAAAAGCGTACACATATACGCATTGTGCCAAAACGTATTTGAAACCAA 9186 23 100.0 53 ....................... CTGCTTCAAGATTTTCCGCGCTTGACGCGTTACTGTTTTAAATTTGAAACCAA 9262 23 95.7 51 ............A.......... CTCTTCGTCTTCATCGTCTTCGTCTGTGCTAATACCATAATTTGAAACCAA 9336 23 100.0 50 ....................... TTCTACACGGCTAAGCAGGAACGTCTGCTAGACGAATGATTTGAAACCAA 9409 23 100.0 51 ....................... CTGTTCTTTTATTGTCTTAATTATATCAACTCATTTAATATTTGAAACCAA 9483 23 100.0 53 ....................... TAAAATGTCTGGCAAAAACGTGCCTATCAACACGGGGCCAAATTTGAAACCAA 9559 23 100.0 51 ....................... AAAGTCGACCCATGACGATTGTGAATTATAGGCGAATCCATTTGAAACCAA 9633 23 100.0 51 ....................... AAGCCGCGTTCTTTTAAATACGGCTGTACTGCATGTACAATTTGAAACCAA 9707 23 100.0 52 ....................... TCATGACCGCAGCTATAAGTAATCGTGACTTTCATTTCAGATTTGAAACCAA 9782 23 100.0 48 ....................... GCAGGTCGCAGAACTTGCCTCGCGCAACGACAAGTAATTTGAAACCAA 9853 23 100.0 53 ....................... TTAACTGAAAAATAACTTCTGTAGCATTAGCCAGTGATGTTATTTGAAACCAA 9929 23 100.0 54 ....................... TCCCTGCACACTCAATGCCTTATCCATGTCGCCAGTCGTGAAATTTGAAACCAA 10006 23 100.0 53 ....................... GCAATGAGAATAAACAAAAGATGCATTGTATCCGTCATATTATTTGAAACCAA 10082 23 100.0 53 ....................... TGTTACCGTCTCCTATAATGATGTGGTCAATAACAGGGATAATTTGAAACCAA 10158 23 100.0 51 ....................... AGTCCTGCTTTCTTGATTGCATAATCAAGCTCCAGTGCGATTTGAAACCAA 10232 23 100.0 45 ....................... TTCTTCCATCGGCATTACAATGTTTTTCATGACATTTGAAACCAA 10300 23 100.0 52 ....................... TGTACTTTTCAGCTGCTTCCTGCGCTTCCGCTCTTGTGTAATTTGAAACCAA 10375 23 100.0 50 ....................... ATTTCAACGTCCTGTAAATAATCTGCATCGGAAACGTAATTTGAAATCAA 10448 23 100.0 49 ....................... GCCCCGCATGATAAACGAACCCTTTTCTTTCTCATAAATTTGAAACCAA 10520 23 91.3 0 .....................TA | ========== ====== ====== ====== ======================= ====================================================== ================== 23 23 99.4 51 CATCCCCGACAGGGGACGGAAAC # Left flank : AGAAGGTTGGTTCAAGTGCGACTTCGATGATTTTTGCGTTGCGGATGAGGGCCGTGCGCTCGTTTTCGAGTGTGTAGTCGTGGAAGTAGTGGAGCAGGAAGGCTCCGAGCAAGGCGAAGGACGCAAAGATGATGAGCAAAAAGGATGTTACGAGCCGGCGCGTGATTTTTGAACGAAACATAAACATTTCCCCTGACTGCAGAGTTGATTCGACGCCTTTATTATATCATATTTATTTGTGATGTCTGGCAAGAGTCCTTGCACAGTCAATGTATGTCAAAAATAAGAAAACAAGAAGGATTTTGCGTATCTGCGTAGAATTAAAAATAATAAATCCATTGTGGTGGTGACATAATCCGCACCGCGGCTTGCTGTATAAGGATTCGAGCAACATATAGAAATTTTTCGATTGACAAAACTGAGCGTTTTGCCATCCGCCCCGCAAAAGCCCGTTTCTCCATTGTCGCGCAACGGATTCCACCGACAGGATTTGAAACCAA # Right flank : AATAGAAGGGAGGTCTTGCAATGAGTTTTGTTTATATCACAGAAGATGGCGCCTTTATCCGTAAGCGCGGGGGCAGCTTTATCGTGGGGCAGAACGATCAGGAGCTTATGGAGATCCCCGAAGCAGTGCTTGATGGATTGGTCATCATCGATTCCGTGCAAGTATCTTCTCGGGCGATGGTTGAGTTTCTTCGTTTGGGAATCCCCGTGACCTGGCTTTCACGGCGAGGTGCCTTCTTTGGCCGCCTGGAATCTACACGTCATGTCAATGTCTTTCGTCAGGAAAAACAGGTCTTGCAGCGTGGCGGGCCATTTTATCTGGCCTTGGCCAAGAAATGTATTGCAGCGAAAATTCATAATCAACTGACGATTTTACGGCGCTATAATCGTTATACAGAGTCATCTGATGTGCAAGACGGCATACGTCAAATCATCGCTAACAGCCGCCATATTGATACGGCAGGAACCAATGAGGAATTGATGGGGTATGAGGGCATCGTT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCCCCGACAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4589-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRVW01000049.1 Mitsuokella sp. AF21-1AC AF21-1AC.Scaf49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4588 28 100.0 32 ............................ TATATGCTTTATAAATCCAATACCCGCGCCGT 4528 28 100.0 32 ............................ AGTTGGCTTTCCCGCGCAGGACGTCGCCGCCT 4468 28 100.0 32 ............................ TTGAGCAGACGACCGAGGAGCGCATCGAAGAG 4408 28 100.0 32 ............................ CACATGCTGCCGTTCATCCTCGCCCATGAGAT 4348 28 100.0 32 ............................ TCTGTAAATAGCTTGTCCATATTCCGCAATGT 4288 28 100.0 32 ............................ ATCCAGCTGACGGAAAACTATGGCCGCCTGTC 4228 28 100.0 32 ............................ ATGAGCATCACGACCTTTTCACCATTTGACCT 4168 28 100.0 32 ............................ AATACATGGACTGGCAGTCCTGGCCGAAGGGA 4108 28 100.0 32 ............................ ATACTCATACTGTGTTGCTCTCTGTACTCTCG 4048 28 100.0 32 ............................ AGATTCCAAAGGTATCCGCATTTCTCTTCTGC 3988 28 100.0 32 ............................ TAATAGTTTGACTATTCCGTTTAGGTATATTG 3928 28 100.0 32 ............................ TTCTGCAACTGCTTTGCCTGTGCTGTCAGTTC 3868 28 100.0 32 ............................ AGCGATCAATGTAACGCCGACAGGGACAGATC 3808 28 100.0 32 ............................ TTCTTTAAGTGGGTTTAATATCCGTTATCGTA 3748 28 100.0 32 ............................ GCCACTATTCACTGACATGTTTCCCCATTGTA 3688 28 100.0 32 ............................ TGCCGTGACTGCGCCCGAGATCAGCGAGGTCA 3628 28 100.0 32 ............................ TTCATCGCATATTTCGCGATCATGACGGCCAG 3568 28 100.0 32 ............................ AGCAAGGCCGGTAGCGACGACCGTGATACCTT 3508 28 100.0 32 ............................ GATACCTGCACTCACGCGGTATCCCTTGCAAT 3448 28 100.0 32 ............................ ATACGCCACATGAGTGCCGTCATACGCTTGCA 3388 28 100.0 32 ............................ GTTCTCGCGGATTCGGAATTTCCCGCCTTTGT 3328 28 100.0 33 ............................ GGCTGCTGAAAGAAGGGCTTGAGTCTGTATCTG 3267 28 100.0 32 ............................ GAATTTGCCGCCCTCGCGCGGCGGCACCATTT 3207 28 100.0 32 ............................ TCGAGGTTACACTCGAGTTTCCGGCCGGCTTA 3147 28 100.0 32 ............................ GGCGACTCGTATAAAGTCAAGCTGCAGGACAG 3087 28 100.0 33 ............................ CATGGATTTGAGCGTATGGTCATTGAGCGGGAT 3026 28 100.0 32 ............................ GGACCATAGCCGCCGCAATAGAGCAGATTGAG 2966 28 100.0 32 ............................ TCTGTGAGCTGCTCGAGCGTCTCCTTGAGGCG 2906 28 100.0 32 ............................ TGCAGTCAAATTCGCTGAATGGCGAGGATGAG 2846 28 100.0 33 ............................ TTGTAGACGGTGCCGTCCGCCTCACGATATTGG 2785 28 100.0 32 ............................ GCGGGTGCGGGGCTCACCCATAGCCTCGGACA 2725 28 100.0 32 ............................ GGCTGCTTGGCTGAGATGTACATTGCATCCCC 2665 28 100.0 32 ............................ GCCCGCCTCGACGAGCTGCATGATTTTCTTAA 2605 28 100.0 32 ............................ AATGTCTGGACGACGCGCATTGCGGCCAGTGC 2545 28 100.0 32 ............................ TATGAGCATGGTTACCGTTTCGGTGATTATGA 2485 28 100.0 32 ............................ AGAAAACCGAAGAATAAGCAAAGAAGAAAGCC 2425 28 100.0 32 ............................ TCTTTGCCAATGACTGGGAGGTGGTGCCGTGA 2365 28 100.0 32 ............................ TCTTTGCCAATGACTGGGAGGTGGTGCCGTGA 2305 28 100.0 32 ............................ TCTTTGCCAATGACTGGGAGGTGGTGCCGTGA 2245 28 100.0 32 ............................ TCGGGCGTACAGCAATCGAATGAAGAAAGGAT 2185 28 100.0 32 ............................ AATTGACCCGGTAGTAAACGTGGTTGTCAATC 2125 28 100.0 32 ............................ ATACTGTTATACCTTCTTCGCCGTCACTGTTA 2065 28 100.0 32 ............................ GAGAGCCGCGCGCCGATACCGAGCATGATCTT 2005 28 100.0 32 ............................ GTCTGGATTTCCTGCATCTTTTTTGCATTTTC 1945 28 100.0 32 ............................ AGAAAGCGTGAGGAGCATGGTATTAGGGGATG 1885 28 100.0 32 ............................ AAAAGTGCCTTTTACATTAGGCAATTCCCCGA 1825 28 100.0 32 ............................ GCAAAAGCGTCATAGAGTACGTGCCATTGCAG 1765 28 100.0 32 ............................ GAAATCTCTACTTCTTCGATTCGGCCTACATT 1705 28 100.0 32 ............................ AAATGCCGAGTTCCGGCGTCTCACCGCGCAAG 1645 28 100.0 32 ............................ TGCTTATTCTATTTTCAGAGAAAGGAAAAAGA 1585 28 100.0 32 ............................ AATGGCCGACAGAAGGGTGTTGAACGCCCCGC 1525 28 100.0 33 ............................ CGTCCCCGTTGATGTTGATCCACGTCGGATGGA 1464 28 100.0 32 ............................ AATGCGGACGGCTGCGCGACCGTTAATGAATA 1404 28 100.0 32 ............................ ACCCTGCACGGCTTTCTGCAAAGCAGATACTT 1344 28 100.0 32 ............................ TTTCGCTCGATGTCTTTATCGTCGCTGTACGA 1284 28 100.0 33 ............................ TTTGCTGGCATGTACTGTTCTTCGGTTTTCTCG 1223 28 100.0 32 ............................ TGCTTGCAAAGCGCAAAGCCGCCCGCGACAAA 1163 28 100.0 32 ............................ GTCGTATGGCTGCCGCTCTTGCCGCAACTCTG 1103 28 100.0 32 ............................ TTGTCGCATTGCTGCATAGTCATACCATACTT 1043 28 100.0 32 ............................ ATAGAGCACAGTCTACTTTCCCTGCTTTCAGA 983 28 100.0 33 ............................ TGTGGCTTTTCCGATTGCATTTACCAGTAAAAA 922 28 100.0 32 ............................ ACGAGCGCAGCGACAACGCGGATGGCACGTGG 862 28 100.0 32 ............................ TTGAAGTGGGGCAGGCTTTTCTTGCTCAACTC 802 28 100.0 32 ............................ AATTTAAGTTTAACGAACCGTTGTCGCCGCTA 742 28 100.0 32 ............................ TCCCTTTTGATCCCGAATGTAAAATCGGGAAA 682 28 100.0 32 ............................ AACTGAACCGAAACACGCTTAACAATCGTCTT 622 28 100.0 33 ............................ AGCAGACTGCTTGCCGAACGAGTCCGACCGCAT 561 28 100.0 32 ............................ GTCGCCTGACTCTCAGCTTGGATGACTGCGGC 501 28 100.0 32 ............................ ATCGATACCAAGATCTCGGTCGAGCGGGATCT 441 28 100.0 32 ............................ AGACGGGTGATTGTGAAACACAAAGCACCCAT 381 28 100.0 32 ............................ GGCTTGAAAGATGCGTCGAAGGAAGTCGAGGA 321 28 100.0 32 ............................ TTTTTGTCTCTATAATGGTAGGAAACTTGCAG 261 28 100.0 32 ............................ GTTTTACCGGCACGATCACAGGCGATCACATC 201 28 100.0 32 ............................ GCTCCGGTCGGATCTGTGATACGCGCCTCGAA 141 28 100.0 32 ............................ CGACCGGCTGGGATCTTGTCGGGGCTGCACAG 81 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 76 28 100.0 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTTGCAGCATTTGAATCTGACTGAGGCATTGAAGCGCTTTACACCAGATTATGTGAAAATCAAGACCATCCGTCCAGTCCCCGTCAGGGCCTGCAAAGGCTTCGTGACGTACAGCCGCTATCAGCCAGAGGCCACAGCGATGCGAAAAGCTAGACGCTATGCAAAACGGCATGATATGTCGATAGAAGAAGCCCAAAAGCTTTTCCCGGCACTTACTCATAAGGTTCAATATCCGTATATCCAATTGGAGAGTATGACCAACCATCATCGTTTTAGCCTGTTCATCCAAAAAAAAGAAGCAGTTGAGCAGCCCTTCAAGGGATTTTCTGCATATGGGTTCAGTACTGAAACATCGGTCCCTGACTTTTGACCCAAAATTTTTCCGTTGCTGGCAGGCCTTGTGAAGCAAGGGCTTTGACAAGAACCTAAAACTTTGGTTAAATAAGGGTAAATAACTGCGAGCTTAGGCAGAATAAGGATATTCACGCAGGAGATTACT # Right flank : ATTATATATCAATAACTCAAACTTCGCACACCTGAATCCCTCATAAGATAAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33253-33512 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRVW01000016.1 Mitsuokella sp. AF21-1AC AF21-1AC.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 33253 37 100.0 36 ..................................... CCTCGAGACCGGAAAAGAACACATTAACGATTTCGA 33326 37 100.0 38 ..................................... TTAGAATAGGATGATCGTAACGCAGAATTTTGGAATTC 33401 37 100.0 38 ..................................... ATTCTGCAAGAGCTTCATCAAAGCTAGGTACAGACTGA 33476 37 86.5 0 .............................T..CTCC. | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 96.6 38 ATTGTAGCCCTCCTAATACCGTTTTCGGTATTGAAAC # Left flank : TAATGCAAATTCATCTCCATATCCATAGTTACGCACCAGGGATTCGATTAAAAAGGAGTGCTCACCATGATTTCATTTCTGTTGTATGCAGCTATCATGTTCGGGTCCATTCTTGCGCTGCTCTGTCTCATTGCCGGGATTGCCGGTTTTATCTCCGGCATCATCCATTCCATCCGGCATGACCTTTGACGCCAGACCGTTCTGCACGAGTAGCAAAAACAGGAAAACCGACATACTTCGCTGCCCGAGAATTTGACAAAATATTCCCATGATGGTATACTGCAAACTATAGAAAACCATTTTAAGGGGTAAAAACGCCCCAGGTTTTCCGTTTTTTCACCGAACACCGCCAAGCCTTGTTAGTCAAGCGTTCTCGCAATCTGATTTGCTTGAAAAGCGAACACGGGCTTTCATCGCAGCGTTCGAAAAACCGAAAAACGACTGAGGTTTTCCACTTTACTAATCTGGGGCCAGTAACCCCAAGGGCTCAGGGGCACAGT # Right flank : CATCATCATCAAATTAAAAATCCCCGATTACATATAGATTCAACAAATCCATATGTAATCGGGGATTTTTTGAACATAAACGAAAGGAACGCGTATGCCCACTTATCTTGCCATTGACCTCAAATCTTTCTACGCCTCAGTCGAATGCCGGGAACGGGGACTCAATCCGTTGACGACGAATCTCGTCGTGGCGGATCCGACGCGGACGGAAAAGACCATCTGTCTGGCCGTTTCGCCGTCGCTCAAGGCCTATGGCCTTCCGGGCCGTCCGCGCCTGTTCGAAGTCGTGCAGCGCATCAGGGACGTAAACAGCCAGCGGCGGTTTCACGCACCCGGCCACACGCTGACGGGGAAATCCGCCGATGCCAAAGAACTCGCGCAGCACCGGGAATATGCCGTCGACTACATCAAGGCCACGCCGCGCATGGCCCTCTACATGGCGTACAGCACGCGAATCTACCAGATTTACCTGCGCTATGTCGCCCCGGAGCTCATTCATG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCCCTCCTAATACCGTTTTCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //