Array 1 215099-215789 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNF01000002.1 Mesoplasma corruscae strain ELCA-2 meso03.02.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================ ================================================================================================================================================= ================== 215099 44 100.0 31 ............................................ TTTAATGCATCTTGAAACATTATTGACATGT 215174 44 100.0 31 ............................................ GATTCAGACCCATTAAACATTGCTTCAATAC 215249 44 90.9 31 ...C............G.....A.................A... TGTAGTGCATTTTGAAACATACAAGACATTA 215324 44 79.5 145 .TT.G.....TGA.........A.....A...........A... GAAGAAGCATAATTAAACATTCACCCCATATTAGTAACATTACTTGTATCTCAGGCTATATATTCTTTTCCGTTTTCACCATTTACTTTTTTAGCAGATAAATCTTGATTGAAATTTGCAGCTCCTTGGAACATTCCATTCATAT 215513 43 84.1 41 ....G..T..TG..........A..........T......-... TAATGGAACACCTAAAGAACTATTAAACATTACTGACATAT 215597 44 93.2 31 ................G.....A.....A............... TATAATGCATTTTGAAACATTGCTGACATGT 215672 44 86.4 31 ....T.....A..C..............A.........C.A... GAAAAATCGGAATTAAACATTCATGACATAT 215747 43 79.5 0 CT.....T..TGA.....C.........A...........-... | ========== ====== ====== ====== ============================================ ================================================================================================================================================= ================== 8 44 89.2 49 TAGTAACATTGCTTGTATTTCATTTTGATATATCACCATTGAAA # Left flank : AACATAAATTACAGGTCCAGCAATTGCAACTGTAAGTAGTAAAGATGATATTATTGCAAATAATATTTTTTTCTTTTTCATTTTTGCCTCCAAGTTAATTAAACTCAACTCAATTATTACAAAAAAAAAAAAAAAACAATACATTATGAAAATAAGTTTGAAATCACAAATAATATTGATTTTAAACTTATTTCTAATATTGTATTCTTAATTAACTTTTTATTTAGTAAAAATTGGCTGTTTATCTCATTTTATATTTTTGTCATTTCAAAATTCTGTATGGTTATTAACCTGACTAACATTTCAATTAGTTAAATCTTGTTTAAAACTCATTTCTTTACCATTAAATGATGGTAAATAATCATTTCAAAACATTTGCGTCATATCTGTAACTTTTGACGTATCTCAAGCTGTATATTCTTCACCATTTTTATCTTTTACTTTTTTAGTAGATATATCTTGATTAAATGAAAATGCATCGCAAAACATATAGCTCATGT # Right flank : ATAATTTAGCACCATTAAAAGTCGCTTGCATATTAGTAATATTTGATGTGTCTCAATTGCTTATCCCTTTAATTGAATTTAATGAAGAATTTGCAAAAAAATCTTTTAGTGATGTTATTTGTTTAGGTAAAATGTTTGGTAATGATTTTACAGTTTTTAAATGATGTATTGTAGAACCATCTGTTTTGAATCCAATTTTATATATTTCAACTGCGTTTAAATTTGAAAAATCCATTAAATCAGTTTCTAATAAATTTCCATTTTTATCTTGATAAACAGTAATATTATCTGCTAATGAGTCATCAGAAATAATTGATGTGACCAATTCAATTGAGCCATTATACTTATAATTATTGTTAACTTCACCTTTACCTGTAAAAGTGTATTTTATTTGATTAACTGTTATTGTTTCATTTTCAATAGGTTCTAATTTTGCTTTTGCAACTTCAATTCCACCAGCAACATCGATATTATCATCAATTATAGCTTGATTTAATTCT # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:0, 3:3, 4:0.46, 5:0, 6:0.25, 7:-1.61, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGTAACATTGCTTGTATTTCATTTTGATATATCACCATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 50980-49954 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNF01000003.1 Mesoplasma corruscae strain ELCA-2 meso03.02.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 50979 36 100.0 30 .................................... AAAAATAATTGTGCTTTAATATAACTAGTT 50913 36 100.0 30 .................................... ATTTAAAAGGTGATGTTGAAGTTGATTATC 50847 36 100.0 30 .................................... ACTTTTCATTTTCGTCAAAACTCTGTTTAA 50781 36 100.0 30 .................................... TTTGTCAGTCATTTTCAGACAATGTATTTT 50715 36 100.0 30 .................................... AAAGTAATCCGAAAGTAATTTGAGAGATTA 50649 36 100.0 30 .................................... TTAAGTTAATTTATGAGATAATATATATAT 50583 36 100.0 30 .................................... TATTTCAAACATCTTCATCTGTTAGACCAT 50517 36 100.0 30 .................................... GTTTATATAAAGGGAATGTAACTCTTTTTC 50451 36 100.0 31 .................................... AAGTTTTAGAAAAATCAGCAACTTCTATGAC 50384 36 100.0 30 .................................... ATTATCTTTTTAGATAGAAGCTTTAATCCT 50318 36 100.0 30 .................................... TAATTTGCAAGAACCAAATAAATCTGATGC 50252 36 100.0 30 .................................... TAATAATATGTGATTAAAAAGTGTATAGTC 50186 36 100.0 29 .................................... TTAAAACACAAGCTATAAAAATAAAAGGT 50121 36 100.0 30 .................................... TTTGGATTATCGATTGGGTTTTGCAATTCA 50055 36 97.2 30 ......A............................. ATTTTTGGTGAGTTGTCAAAACAAGAAGTT 49989 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 99.7 30 GTTGTTCTACCCTGTAAAATTTTTGTGTGCTAAAAC # Left flank : TTGAGAAAGACAATAATTTAGTCGATGAGACCAATATTACCATTTACGATTTGAAACAAATTTATTTAAGATTTTTATCAATATTTGAAACATTTTAAGAAAAAGAAATTATTTTTATTTTTAATGATCCATTTATAGGAATGAATTACGAAGAAGCAAAACAATATTTTAAAAGTCTAGAAAAATTAAAGAATAAATTTATTATTGCAAGTTGAATCCCATATGTTAGTGATGATGAAATAAAAAATATTTGTTTAATAGACAAAAATTTTAATAAAGATTTTAGTTCAATTTTAAATAATATAGAAAATTATCAAATTTATTGCGAAATTGATATAAAAAAACTTTTACCAAAAATTTTAAAAATCTTTTTAGAAAATTATAATTTATATGATTCAATTTTTTTGAAAAAATAAAATTTAGTGATGTTCATTCAGAAACTCTATTCAAAGCATTTTTTTATAATTAAATAATTTTTTTCATAAAAGACTTGACTTGAG # Right flank : AATTAGCTAGTATAGAATTCAAATCACTAAAAAAACGGTTAAGAAAAAAGAATTTGAGTGTCACTTTCTACAAAATTACAACTTCTCTAAAACCAAACTTAAAGAAAAAAATTAATAATTTAAAGAAGTTAATTCGTTATTTGATAAACAATCATTCTTTAGAGTTAATTTACCTGAAACCAAAATTATTAAAATTTCAGTATTAGAAATAAAATAAGAGAAACTAAATCATTCACTAGTGAAGAAATCACTTTCTTTGAATTTGATAAAATTCTTAAAGCTAACACTCAAGAAGTAAAAAAATGAGTTGATGATCATAGAAAAAATTTGGAACAAGAAGATTCTAAAGAAATCGAAGAAAGTGTAACTTTATAGAAAAAATAAAAAAGAGTCGATTACATTATTGAAATAATTGTTGTATAATATTTATGTACAAGGTGCAAATCTTGTAAGTGGTTAGTAATTATGACCGGCAAGCAATCTTTAAGCAGTCAATGTGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCTACCCTGTAAAATTTTTGTGTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //