Array 1 424820-426378 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOXB01000003.1 Salmonella enterica subsp. enterica serovar Stanley strain G117 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 424820 29 100.0 32 ............................. TTAGTCGCACCACCGGAACCTACCTGCGCCTC 424881 29 100.0 46 ............................. NNNNNNNNNNNNNNTTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 424956 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 425017 29 100.0 32 ............................. GGCTAGCCTACCCTTTAAGGGGTTCCACAACG 425078 29 100.0 35 ............................. GCTGCCANNNGCACTACTACCCGCCGTCGTTCCGC 425142 29 100.0 32 ............................. CGTTTATGGCCGGTGCAAAATTTGGTGCTAAT 425203 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 425264 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 425325 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 425386 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 425447 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 425508 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 425569 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 425630 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 425691 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 425752 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 425813 29 96.6 82 .............T............... GATTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTACTGTATTATCTCTCGCATAGACCCGGCA 425924 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 425985 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 426046 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 426107 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 426168 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 426229 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 426290 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 426351 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================================================================== ================== 25 29 98.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 442502-443085 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOXB01000003.1 Salmonella enterica subsp. enterica serovar Stanley strain G117 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 442502 29 100.0 37 ............................. GNNNNNCGGGACCTCCAGCGCCACTGCTAATATTCGT 442568 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 442629 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 442690 29 100.0 93 ............................. AACGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGACTATTAGAGATTATTCGCCT 442812 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442873 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442934 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 442995 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 443056 29 93.1 0 A...........T................ | A [443082] ========== ====== ====== ====== ============================= ============================================================================================= ================== 9 29 98.9 40 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //