Array 1 95875-94932 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDP01000047.1 Escherichia coli strain NS-P009 sequence047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95874 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 95813 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 95752 29 96.6 32 ..A.......................... CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95691 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95630 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95569 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95508 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95447 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95386 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95325 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95264 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95204 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95143 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95082 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95021 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94960 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAGATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115324-113953 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDP01000047.1 Escherichia coli strain NS-P009 sequence047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115323 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 115262 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 115201 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 115140 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 115079 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 115018 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 114957 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 114896 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 114835 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 114774 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 114713 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 114652 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 114591 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 114530 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 114469 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 114408 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 114347 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 114286 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 114225 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 114164 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 114103 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 114042 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 113981 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //