Array 1 2035048-2032764 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKE01000001.1 Actinocorallia herbida strain DSM 44254 Ga0197506_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================================================ ================== 2035047 29 69.0 236 C.....GTA...G.C..A...A.C..... CCCACCACACCCTGGAGATCTCGCGCTCCGAAGGAGCGTCGGTCGCGAACTCGAAGGGTCCGGACAGCCGTCCGGTGCGCTACCGGCTGAGGACGTCAGACATCGGCGCAGACAACGGTCACTGAACGTCCACACCACTCCAAGCCCAACCACTACCGTCAGTTGTATGACGGTTCTCCGCACTCTCCCAACATCTCAAATCGATAACCCCGCCCTTTAGCCGCAGGTCGCGAAGG 2034782 29 100.0 69 ............................. CCGCCCGCGCCGCCGAGCGTCCCGCACCTGGGGTCTGTTTAGCGAATGGTGGGACAGGTTGTTGTTGCT 2034684 29 100.0 32 ............................. CGTCCTACCGCGAGGGGGTCGGGATGTTCGAC 2034623 29 100.0 32 ............................. GCGTTGTCGCGGGTGACCTGGATCGCGCGGTC 2034562 29 100.0 32 ............................. GATCTGCGCGGGCTGGTGATCCCAGCCCTGGA 2034501 29 100.0 32 ............................. GTCGTGCGCCAGTACCTCGACAGCCTCGGCCT 2034440 29 100.0 32 ............................. ACCACGTGGGTGCGTGAGAACGCCGCGCCCGA 2034379 29 100.0 32 ............................. CCGGTCGTCGGCTACTTCATGGACGTCGCGGT 2034318 29 100.0 32 ............................. TTCATCGGATGGGGCGGGCGGTGGCCGATCGG 2034257 29 100.0 32 ............................. GGAGGCCACTGCATTGGCCGTCACCGATCGCT 2034196 29 100.0 32 ............................. CTGCGGATCACGCAGGCGCCGGCCTCGTCGGT 2034135 29 100.0 32 ............................. GGTCGCCACGGGGTCAGGGTCCGCGGCGAGGG 2034074 29 96.6 32 ............................A CCCTGTGGGGGATCTGGTCCGCCCTCGCACGC 2034013 29 100.0 32 ............................. TCCGCATGGCTGTGCCCGAGGCCACCCGGTGC 2033952 29 100.0 32 ............................. AGGAGCCCCTCGCGGATGCGCTCGGTGGTACC 2033891 29 100.0 32 ............................. GCCAACCCCGTCAGCGAGGGCGGGAACGTCGC 2033830 29 96.6 32 ...............A............. CCGGTGCAGGTGGCTCCGGTGCTGCGGCTGGT 2033769 29 100.0 32 ............................. GAGCGCGAGGAGATCGCGGCCCAGCTCGAAGA 2033708 29 100.0 32 ............................. GTGTCCGCGCTCATGGGCAAGCCGTTCATGCC 2033647 29 100.0 32 ............................. AGTTCGATCGCGACGGCGTTGCGCTTGGCCGG 2033586 29 100.0 32 ............................. TGGCTGTTCGCCTGGGCGGTGGAGCCGTTCAT 2033525 29 100.0 32 ............................. CAGCCGGTTCTCGTGGTCCCGTTCACCAGGGC 2033464 29 100.0 32 ............................. GCGTAATCGCGCTGGTTGTTACCGGAGAAGAG 2033403 29 100.0 32 ............................. ATCTTCTCGTACTGGGCGCGTTCCGCGCTCTC 2033342 29 96.6 32 ........................A.... GTGTACGGGTTCTGGTTCAGGTTCATGAAGTC 2033281 29 100.0 32 ............................. ACGGGCCTGACGTTCATGGTCATGGCTGAGCC 2033220 29 100.0 32 ............................. ACGCGGAACTCGCTCAGGGTCGTCACGATCAG 2033159 29 100.0 32 ............................. AACCTCAAGCGGATCGAGCTGAGGCTCGCCCT 2033098 29 100.0 32 ............................. AGGCCATCCCGTCCGCGCTGTGGACGTCCCTC 2033037 29 100.0 32 ............................. ACGATCAGCACGATCGGGTTGCCCGCCATAGC 2032976 29 100.0 33 ............................. CCCCCCAATCGCCTACTACGGCGCCAAGGTCAC 2032914 29 100.0 32 ............................. GCGACCACCAGGGAGCTCAAGAAGGTCACCCA 2032853 29 96.6 32 ......................C...... GTCTGCGTGGCGCTCGCGCGGATCCGCCACCA 2032792 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================================================ ================== 34 29 98.7 39 GTTCGCTCCGCGCAGGCGGAGGTGGTCCG # Left flank : CGACCTAGCATGAGAGCCATGACCACGCCGCCCATCCGCAAAGCCGCCCGCGCCATCCTCCTCGACCCCGAACACCGGGTCCTGCTCCTGCGCTACGACGAGAACGGCGGCTTCTGGGCGACTCCAGGCGGCTCCCTCGACCCCGGCGAAACGCCACAGACGGCGCTCGCCCGCGAACTCCGCGAGGAACTCGGCATCACCGCTGTCGACCTCGGCCCCGAACTTGCGATCCGCACCAAAGACCACCCCGTCGGCGGCCGCCCCGCACGTCAGGTCGAGACCTACTTCGCCGCACACATCGCCCTCGACCAGGTCCGCCCCGAGCAAGCCAGCCACCCCGACAACATCCAAGAACACCGCTGGTGGACCCTGACCGACATCACCAAGGCCGACCAAACGATCTATCCCATACAACTCGGAGACATCGTCCGGGACTACCTGGAAACCGGACCACCCGCACACCCGGTCTCCCTGACCTGATCACCCAAAGCCAGGCCGAT # Right flank : GGGCGACGCGCGTACGCACGACGCGCAAGTATTCCGACCCGCGCAGGTGTGGGACTTGATCCGTTGATGCCTGCAGCGACGGCTTCCTGCACGAGCAGATCCTCGGGGGCTTCGACCGGGTGAATCCGTGAAGCCTGACCATGCTCGCGGCCTATCGGAGCGAGCATGGTCAGGCGTACTCGAGGAAGTCATCTGAAAGGAGCACACCCAGCAGAGATGTCGCACGGCTGGCCGCGACTGTGTCTCGTTTGCCGACCAGCGTCATCGAGCGTGACGGCTACCTGGTGCGGGAGCGGGTTCGGGCCAGGGCGTCGAGGGCGGTGTCGTCGGCATCGGGGAGGGTGTGGAGGTATTTCTCGGTGGTGGAGATGCTGCCGTGGCCTAGGCGTTCTTTGACGACTTGGAGGTCGGCGCCGCCGGCTAGGAGCCAGGAGGCGTGGGCGTGGCGGAGGTCGTGCATTCGGACTTTGAAGTCCAGGCCGGAGGTTTTGAGGGCGGGG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.64, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTCCGCGCAGGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2046700-2045329 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKE01000001.1 Actinocorallia herbida strain DSM 44254 Ga0197506_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2046699 29 100.0 32 ............................. TGTGACGTGTGGCAGAACCTCCGCCGTCTGAT 2046638 29 100.0 32 ............................. TGTGACGTGTGGCAGAACCTCCGCCGTCTGAT 2046577 29 100.0 32 ............................. CGCTACGACGCCGAACGCCGCCAGGTCGAGTC 2046516 29 93.1 32 .C..........................C TGTTCGTGTCGGGTGACACGGGTGTGCTCGTC 2046455 29 100.0 32 ............................. GCGTCGACGTGCCCGACCTCGACGCCGTGGTG 2046394 29 100.0 32 ............................. AGCAGGTCTTCGAACCGGACGGCAGGCACCTC 2046333 29 100.0 32 ............................. CCGAGCACACCATCGCCCGCTGGGCCGAGCTC 2046272 29 100.0 32 ............................. TTCGCGCCGCACCAGTTCGGCGGCGCCGTCGA 2046211 29 100.0 32 ............................. ACGGAGCCGAGGATGCTGCCGACATTTCCTGC 2046150 29 100.0 32 ............................. GCGGCGGCGTTCACTCTGCGGGGCCGCTCGCA 2046089 29 100.0 32 ............................. GCCCTGAGCCTGGGACTCAGGGCCTCCCTTCC 2046028 29 96.6 32 .......................T..... GCGATGGAACCGTTCTTCTTCGGTTTCGCGCC 2045967 29 100.0 32 ............................. TTGTCGAACCGCTTGGCGATGTCGACGAACCA 2045906 29 100.0 32 ............................. TTCGACAGCCCGACGTAGAGGACGTGCGGGGC 2045845 29 96.6 32 A............................ GCGGGGTCACGAAGCGCGCGGTGGCGGCGGCT 2045784 29 100.0 32 ............................. CCGAGCCCGTCGCCGCCCTCGACGCGATGGGG 2045723 29 100.0 32 ............................. AGCACCCCGGCCAGGGGTGTCCCTCGGTTCTC 2045662 29 100.0 32 ............................. GACGAGTACGCCGACGTCGTCGCTGGCGCCAC 2045601 29 100.0 32 ............................. GCGCCCGCGACCTATCTGGCCAGCATGCGCGG 2045540 29 100.0 32 ............................. TCCTTAAGGGCCTCGGCCTTGGTGCTCCAGGT 2045479 29 96.6 32 .................A........... CCCAAGCACGAGATCCTCGCCGCCATGGTCGC 2045418 29 100.0 32 ............................. CTCCTCGCCTACTACGGGACCTCCGACAGCGT 2045357 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.3 32 GTTCGCTCCGCGCAGGCGGAGGTGGTCCG # Left flank : GAGAATCTAGCGTTCACGGCGGCAGAGAGCCAACGTAGTGGAAGGGCGGCGACGGTGTGCATGGCTTGTTCACATCGCGTCAACTCAGTAGCACAGGCTGCCGGACTCCCTGAAGGATCAGATGGTGGCGGCTCAGTGATTCAGGACATGTGTTCGATCAGGTCGTCGCCCAACCGATCACGACGGGCGAGCGGAGTGAGATAACCGCCGCCTACCGCACCACCACGGCCGGACGATGTGACTTATCGATGAGGCCGCCGAGCGTGTTCGGAGCGGCCTCCCATTATCTGCGGAGCGCTGCGGGCCGGCGGAGCAAGGGTTAGTCCTGTACCTGTGGCCCTGTTGCAAATCTAGTCAAAAATGTCCGTTCAGTCCCGTTTCGGGTATCCGACCACATGAGACCAACCAGCTTCTGAGAGCTACGGTAGTGCGCATGCCGCACAGCAACCAATTAAGGTCTCAAAATTGTAACGCACTCACTTAGTCCGAGGTCGCGAAGG # Right flank : TGGGATTCGCTGGTCCGCCTCAGGCCGTTCGCTTCGCGCGGGTGGGTCGCCCGGCTTCGGCTCATGTCTGTGAGGGGGCGGGTGGGATCCGCCCCGGCCACTTTGGCGCATCTGATCGTCCGGCAGGTGTGCCTCGAGTCGGAGGCGACCAATCCGACATTCTCCGTCTTCGTGTCTCCCTGGCCGTCGATCGCCATGCGATCGACGGCCAGGGAGACACGGCCTTCGTCGGCGAGGGTGAACGGGGTGGATACCGAGTGGGGACCTGGCATCGGAGGCTCAAGCCATGCACTTCCCAAGTGCTGCACATGATCGGACCGCGCCCGGTCCGGTCCATGGCGGGTTCCGGTTCAGGGCGTAAGTTGCCTTTATCTATCTCTTGCCCCGCGAAGCGGCCTGCCTAGTCCCAGCGGCAGAGCCCATGCTCTTCTGGCCATGACGGGCACGGGGCATTCGTCATCGCTGCGCAGCGTAGCGGGCAGCCTGCGCCGATCAGTGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTCCGCGCAGGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2059891-2058531 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKE01000001.1 Actinocorallia herbida strain DSM 44254 Ga0197506_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2059890 29 100.0 32 ............................. ACCGCCGAGCTGCACAAGGAACGCATCAGCGA 2059829 29 100.0 32 ............................. GAGTCCACCACGGCGCACACCCTGTGGGGCAT 2059768 29 100.0 32 ............................. CTGCCGCCGAGTTCCTCTGCTTGGCTGAGCTG 2059707 29 100.0 32 ............................. GCGCCCGGACGCGGCGGCATGCTCGCCGGCGC 2059646 29 96.6 32 .....................A....... GTTCAGGCCCCAGACCCGGAGGCAGGGGTGGT 2059585 29 96.6 34 ............................A GGCTCTTATGAGGGAGACGTCCCCCGACGGGAGG 2059522 29 100.0 32 ............................. GTATACGGCCGGTGGCTGCGGACCTCGGCCGA 2059461 29 96.6 32 ..............A.............. TTCCAGATGGACGCCGCTTCCTCCTCAAACCC 2059400 29 96.6 32 ...........................T. CCCTCGTCCTCGAAGCCGCGCACCTTCTTCTT 2059339 29 100.0 32 ............................. ACTTTGGGGCAAATGCGGCCGAAGGTCGTAGC 2059278 29 100.0 23 ............................. CTCATCCCCCTCGCCCTCGTCGC Deletion [2059227] 2059226 29 100.0 32 ............................. CTGCACTTCGGAGCCGCCCGCCCACGTGGTGC 2059165 29 100.0 32 ............................. TGGACGTCGGGCGCGCACGCCGCGGGCCCGCA 2059104 29 100.0 32 ............................. AGCGCCTGGCGCATCTTCTTCGGGGCGCCGTG 2059043 29 100.0 33 ............................. TGGGATCCTGGAGATCCCGGTCCACCTGAACGG 2058981 29 96.6 32 ....A........................ AGCGTCTCCGCGGCGCTCTCCGAGACCGGATG 2058920 29 100.0 32 ............................. ACGGGCGTGCTTCCGCTGCCGCGCAGCCTCGC 2058859 29 100.0 31 ............................. CCAGAGTGGCTCCAGGCCGCCGTCCCCCAGG 2058799 29 100.0 31 ............................. CTCGCGCCCCCCTTGAACACGCGCTCATGGA 2058739 29 93.1 32 ...T...........A............. GCGTTCGAGGTGGCGACGCCGAACTGCTCCGC 2058678 29 100.0 29 ............................. CCGCCGCTCACATTCGCGGCGTCGAAGAC 2058620 29 93.1 32 ...............A....A........ ACGGGGTCAACGTCGAAGGGCTCCCGCCTCAT 2058559 29 89.7 0 .........................GG.A | ========== ====== ====== ====== ============================= ================================== ================== 23 29 98.2 32 GTTCGCTCCGCGCAGGCGGAGGTGGTCCG # Left flank : CATCTCCCTATTGGGAAGATGAGGCCTTGATCATTTGACCGCCGTTTGACCGTGGCCCTGAACCTGCCGATCACCACCGACCGGTAGCCACGCATCCCAGCCCCGACCAGCCGGTCCCCGGTCAGCGGACATGTTCCGACTGGAATGTTCAAACGAATCCCACCGCGAGACACGCCAGGCAGACCGGACACCGACCGGGAGCAAGGCGGCGACGGATTCACTCGAGGTTCCAAGAGGGCCACCGGGGCACCGCCCCGCCACATCTCTCCATCACCAGCCGGACCCTCTTCGTTCCAGACGCCAAGATCGAGACATAACTCCGACGCCTCGGCAAACACCCGACCCAGCAGACCACGACCGCCACCGGCAAACGCCCCGCCCACCTGCCCCGGCACCCGCCCGCCCCGGCCCGCCGCCCGCTACCGTGGAGCACGTGCCACGCCCCAAACAGCTAAGATCTCAAAATAATAACGCCCCCATATAAGCCCAGGTTGCGAAGG # Right flank : GCCTGTGATCTGCCCAGTGTGTGGAGCCAACAGGGGTCAGGCGCTCGCACCGTTTTAGGTCGGGTCGCATTAACCATCGATGATCATGATGAATGGTTACAACGAGGTTTCAGTCCATTCGCGCGGCTCGGATCGATCGCGGTTTTGTCGGTGGGTTGTGTTTCGGTGATGCCGGGGTAATCGACGGACGGAGAAGGGGCGGAAATGAGCTGCGGGGGATCAGGGGTCGTGGATGTTCGGCAGTGGGGGAAGGACAAGGAGTTGCCTTCGGCGTACCCCGTGGTCTGCCACCTCATGGATGCGGCCGCAACAGCTGGGGCGCTTTGGGGGATTTAGTTTGGGAAGGGCGAGCTTGCCCAATGAAAGGGTCTCGTGTCCTTTTGGGCCGGTTTGCATGACATCGGGAAGGTGTCGCCGTCCTTTCAGGTGAAGGTTACGGAGCTTTTCCGGAAGATGGTCGACGAGTCGCCCGAATATGGTTCGGACGAGGCGGTGCCGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTCCGCGCAGGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2564667-2564277 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKE01000001.1 Actinocorallia herbida strain DSM 44254 Ga0197506_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2564666 28 100.0 27 ............................ AGTGCGCGACTCGTGGGTGGGCGAGAG C [2564650] 2564606 28 96.4 33 ...........A................ GCCGCGCCCCGGGCGGCTGCTCCGAGCAGCGGC C [2564591] 2564545 28 100.0 32 ............................ TACGCGCGGCTTAGGGTCGCGCCGCTCAGGTC 2564485 28 89.3 32 ..............G...A....G.... GTGAGCCGGAGCAGCGTCCGGCGGCGCACGAA C [2564469] 2564424 28 75.0 32 G.T.G.T.......G.C......G.... GTCGGCAAGCTCCTGCGCGCGGAGCCGATCGC A [2564405] 2564363 28 78.6 32 G.T.G.T..A......C........... GCGCTAGGGCCGCGATCCTTGCCGGGCCGGGG 2564303 27 85.7 0 ...G........-...A.........G. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 89.3 32 CTCCTCCCCGCGCACGGGGGGTGTTCCG # Left flank : GCAGCGTCCACATCCTCGACCTCCCCTCCCCCGACGCAGCCCGAGCCTTCGCCTTCAACGAACCCAACTACCAGTCCGGCGCCTACCGCGACGTCATGCTCCGCCGCTGGCACAACACCCTCGGCCGCACCATGTGGGACTACCCCCTCGCGTCCCTCAACGATGACGCCTACCTCCTCATCGCCCTAGCCGCCTCCGCCACCCCCGCCGACGAACTCCCCCCACCCTCCCCCTCCCTCATCGCCTACGGCCCCCTCCTCTCCGACGACGCCACCACCTGGCTGGGCACCGCCGCCCTCCTCCGATCGGACTCCCCCACCACCGCGAGCACCTTCCTCACCACCCCCGCCTACGCCTCGATCGAACTCCACCCCTGGTCCCCCGGCGGCCGCCCCACCTAACCCCGAACCCCCCGCATCCGACTGACGTCGAGCCCGCCCGAACCGAACCCAACAAAACGAAAGCCCCCTCCCCCACAACAAACACCCAGACCAGCAAGC # Right flank : CGGGGCCGTCAGGGTTCGGGGGTGAGGCGCCCGGAGTTGAAGATCTGTGGTGCGGGATTCTCCCGTGCCGCCGAGGCCGTCCTCCGGCGGGCGAGGCCGCTAGAGGTCTTCGGGGAGGTCTGTGGCGGGGCCCCAGCGGGCGGCGATTTCGGGCCAGGTGGGGGCGGGGGCGGGGAGGGGGGTGGGGGTCGGGCGGAGGCCGTCGAGGACGATGGTCAGGTAGCGGGGGCGGAGTTCGGTGGTGCGGGCGGGGTCCGGGGTGGTCTTCGTGGCGAGGAGTTTGAGGAGGTAGACGAGGTCGCCCGGGGTGAGGTCGGGGCGGACGGAGCCTTCGGCGGCGGCGCGGGTGAGGATCTCCTGCATGGCGTTCGCGCCCTGTTCACTCAGATCGATCATGGCCTGGGTGACGGGGAAGGAGCCGGCGAAGCCGGAGAGGGCGCCCATGCCGCATTCCAGGGATTCCGTTATGAAGCGGACCAGGGCCGACCAGCCCGACGATT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCACGGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5639855-5639096 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKE01000001.1 Actinocorallia herbida strain DSM 44254 Ga0197506_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5639854 29 86.2 32 C...A......A........A........ ACCCGTGCGGAGGTCTACCTCGTGCGCCGAGG 5639793 29 93.1 32 ....A......A................. ATGTGGCGCGCGCCGGCCCGGGCCCGCAAGCC 5639732 29 86.2 32 C...A......A................T GTCAGCATTCGTGTCGTTCCGCACCGCACCGG 5639671 29 93.1 32 ..............A.............T GTCAGCATTCGTGTCGTTCCGCACCGCACCGG 5639610 29 93.1 32 ..............A.......C...... CAGTCGTCCAAGACGACCTGGCAGTGGGACCT 5639549 29 100.0 32 ............................. GGCTACGGGGAGAGCCTCGGGGAGGTCGGCGA 5639488 29 93.1 32 C..........A................. TTCTCCCCGAGTTCCTTGGTCAGGAACGAACG 5639427 27 89.7 32 ...................--.......C GAGGCCAGTCACTTCACCTGCGGCCCGTCCGT 5639368 29 100.0 32 ............................. ATCCTTCACCCCGACTGGGACGACGTGCGCGT 5639307 29 96.6 32 ............................C TGCGCCCATGGCACCCGTTCCACCTCCGGCGG 5639246 29 96.6 32 ...........A................. CGCCTACCCATCCACGAGCGGGTCACCATCGG 5639185 29 96.6 32 ................T............ TTCCAGATTGAGGCGGCTTGCTCCTCGAACCC 5639124 29 93.1 0 ................T.........T.. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 93.6 32 GTCGGCCCCGCGCCCGCGGGGATGCTCCG # Left flank : GTGATCGCCGACCACAAGCAACGGTCACCCTCATCGCCAACGCCGCCATCCGCTTCACCCACGAATCCGTCACCTACGCGGACACCGAAATCCCCACCGACCAAGCCATCATGATCCCCCGAGCCGCAGCCAACCGAGACCCGAGCACCTTCCCCCCACCCAGCCCCCCTCCACCCTCCTCTGGCGCCGAAGCCGCCAAATGCGCCCCCCAACCCTCCCGTCCTCCTCTACCCCCGCAGCCAGCCAACCCATAAACCCCACACCAGTCGGCCCCCAACAAGCCTGCACGACGTCCTACGAAGACACCACCGAGATAACGAGCGAACACATAGCCCCCCGATCCCAACCTGACCAAGCTCTACACTGCCCTCAAACCTCCATACCCGGAACATCCACCGAACTCCAGACCCACCCACCAGACGCTTGCAGCTATCGATACTAGGAAATTCCGACTAACTAAATTCGGCGCGTCCGACGCACAAACCCCCAGGTCAGCAAGC # Right flank : GGTGCCGAGGCGCTGTGCACGCGGCTCTGCCCTGCCGGCCGACTCGTCCACCTCGTCCAGGTGGTGTTGTTGCACCGCGCCCTCGGCCACGAGCGCGTGGTCGCGGGGATCGCTGCGGCGCTTGGGGGCGGCGCGCTGTTCGCCGACGTGGTCGCGGTCGAAGCCCGCAAAGCCGTCCAGACCGACCCGCAGGCCGATCCGCACCGGACAGTGGTCGCAGTCCGGGTTGCTGAGCTGCCTGACGACCTCGTCTCCTTCACCCGTAGGGAGCCCGGCAGCCTGCCAGCCGGCACGCGGCTGCTGCCCTTGGTGAGCGCCTATGACCAGCTACTGCGCCGCACCAGTCCGGCACAGGCGGGAGAATTCCGATGAGCAGCTCCTACCTCCAGTCGTCGCGGCTGACTCGTCGGCGTGGCCTCATGGAGCCCGCCGCCGAAGCCGCGAGCGACCAGGCCTGCCGGACGCTGCGGCTGCCGGCCTTGCGCCAGTAGTTCGTCGTC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6206635-6206968 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKE01000001.1 Actinocorallia herbida strain DSM 44254 Ga0197506_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6206635 29 100.0 32 ............................. CCGCGTCCGACGCGGCCCAGGAGGAGCTGGCG 6206696 29 100.0 32 ............................. TCCTTGTGTTCCTGCGGCTGTGATATCTGCGT 6206757 29 100.0 32 ............................. TCCTTGTGTTCCTGCGGCTGTGATATCTGCGT 6206818 29 100.0 32 ............................. GCCCGCACCGCGACGGAGACGGCGCTCACCGA 6206879 29 100.0 32 ............................. GTCGCGTTGCCACTGCTCAGAGCTGAGATCGA 6206940 29 86.2 0 .......................G.GA.T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTTCGCTCCGCGCAGGCGGAGGTAGTCCG # Left flank : CCTTCAGGATCCCCGCCAGATGCGTGCGGCTCAGCGACGTCACCAGCCCGACGTCCTCGAGGTGGGCGGCCAACTTCGACAGGCTCCAGGTCGAGAACGCGGTGATGCCCCACTCGGCGGGGGTCGTCCGGGCGATCAGGCAGATGCGCTCACGCACCCACTCACCGATCCTCCTCGAACGGCCCCCTCTCCATTTTGGGTCCAGCGCGTCGAACCCCCGCTCATTGAACGCGTGCACCACCGACCGAACGTAATCATCGCTGACCTGCATCAACGACCGAATCGCAGCCGGGGCCTCTTCGTTTCCAGAAGATCAAGATCGAGACATAACGTCGACACCTTGGCCAATGCCAGCCCCGGCAGACCAGGACCGCCGCTGGCGAACACCTCGTCGCCAGCCCGCCCCGGCCCGCCGCCCGCTACGGTGGAGCACATGCCACGCCGCAACCAACTAGGATCTCAAAAACATAACGCCCCCATATAAGCCCAGGTCGCGAAGG # Right flank : TGTTCCGCGAAGGGCTCTGTTGTGAAACCGGTGGTAACTCAAAGTGGCCGTCCTCGTTCCGGACATTCGCACCCTTCGCGCCACCTCCGGGAGCACTGTCGATAACGAAGTGTCGGTCCCCGGATCACCGAGAACTACGGCAAACCACAGATCTCGGGCATGCACGCTCCGTCACCACCGAATCTGAAACAGAGCCCCGTAATCGGTGGTAGCTCTGTGTGATTTCGTGGCAGGCTGGAGGGTGCTGAGGGCTGAAGAGCTGGTCGGGGTGGTGTTCGCGGGGTTGTCCGCGCTGGTCATCGAGGACGTCGTGGAGGGCGGCGAGGTGATCCGGGTGAGGGCGAGGACGCGTGAGGAGCAGGTGCCGTGCCCGGTGTGCGGGACGTTGACGGGCCGTGTGCATGGCAGGTTCGGCCGGACGGTCGCGGACGTGCCGGTGGATGGGCGTCGGGTGGTGGTGTCGGTGCGGGTGCGGCGGCTGGCCTGCCAGGCGTGGTCGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTCCGCGCAGGCGGAGGTAGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //