Array 1 5373-6925 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWE01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5328 NODE_3_length_240598_cov_89.716779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5373 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 5434 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 5495 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 5556 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 5617 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 5678 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 5739 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 5800 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 5861 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 5922 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 5983 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 6044 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 6105 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 6166 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 6227 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 6288 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 6349 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 6410 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 6471 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6532 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 6593 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 6654 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6715 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6776 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6837 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6898 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23240-23757 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWE01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5328 NODE_3_length_240598_cov_89.716779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23240 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 23301 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 23362 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 23423 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 23484 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 23545 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 23606 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 23667 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 23728 29 93.1 0 ............TC............... | A [23755] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //