Array 1 2723065-2721648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017420.1 Delftia tsuruhatensis strain CM13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2723064 32 100.0 34 ................................ GCCACCAAGCCCCGCAAGCGGGTCTTGGCCCATT 2722998 32 100.0 33 ................................ CTTCTTGGAGCCATCGGCGCCGGTCTCCGTTTT 2722933 32 100.0 36 ................................ CTAACTCAGCAAAACCAGCCTTGCAAACACACTCAT 2722865 32 100.0 34 ................................ ATATCGTTTCGCGGCTTTCTCGATGGGCAGCGCA 2722799 32 100.0 35 ................................ TTTGCTGACAGCGCCTGCGCTGACAACCCAAGGAA 2722732 32 100.0 35 ................................ ACGGTCACTGCATCAGCAGGCACAGGCCCAGAGCC 2722665 32 100.0 33 ................................ TCTCTAGCCAAGGTAATCGCCGAACTGAAGGAC 2722600 32 100.0 33 ................................ GATCTCCAGGCCCTGGCGCCGCAGCTGCTCGAA 2722535 32 100.0 35 ................................ TCGATGAAGCCGTCGGCTGCCGTGGGGCTGAGCGG 2722468 32 100.0 34 ................................ CCTGCATCCCGATCAAGCCCCCAGCACAGGGGGC 2722402 32 100.0 35 ................................ GTCACCGGCCTGCCGCGCCAGGGCAAGACGCTCTG 2722335 32 100.0 33 ................................ CAAAGTGAACTATGAATAAATTAGGCCGGCCTG 2722270 32 100.0 34 ................................ ACCCCTCGCCGCGCAACGTGCCCGTCGACAAGGG 2722204 32 100.0 36 ................................ GCTGTGGTCGCTGTCGGCCCGAGACAAGGAGCTTGC 2722136 32 100.0 33 ................................ TCGTAACCCATGGCGGACTCCTTAGATGCTTGC 2722071 32 100.0 34 ................................ TGATTCCGAAGTGGGGGCTTCTTCCGGCGGGAAG 2722005 32 100.0 33 ................................ GGGTCACGCACCCAATCGCGAAAGACCTGCAGC 2721940 32 100.0 32 ................................ TCGTAGACGCACAGCGTCTTGCCGTTCTTGAG 2721876 32 100.0 33 ................................ GCGGACATGGCGCCGACTATCACGCGCATCGAT 2721811 32 100.0 34 ................................ ATTGCAGGAGTGCACACAGCATGAGCGCCCGATG 2721745 32 100.0 34 ................................ GTTTAAGCGATCCATAGCTTCCATAAGGTGGCTA 2721679 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.9 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGCGTCAGCGGCTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAACCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCGGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCTATCCTGATCAACCGCATGAAGGTGGCTGGTAGCTGATTGGCTTGCGGCTGCGCATGCTGATGAAAAGCGGCCCGAAAGGCCGCTTTTTTGTGGGCACCCAGTCACCGCGTGCCCCGGCCGCAGTTGGCCGCACCAGCTCGCGTCCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGAGGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGCATCACTGCGTCTGTCGTGGTCCTTGCCGTTTTTCCGTGACAGAGCGCGCAGGTTCGCGATGGCGAAGCTTTTTTTGCAGTGGTACGGCTGGGTTATAAGCATGCC # Right flank : ATGGCCATCAAGCGCGAAATGACGGGTTCTGGCAATGGCTGGCAGCCCGATGCCTGCATGTCGGCAAGGCGCTGTCCTACTGGATGTGCAGGGTTTGGGAAGGCGACGCAACTGATTCAAATTGTCAAATTTGTTCCCGGATGTGTTTCTTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTCCTTGCGGTGATCGTGGTCTGCGTGTGCGTGGCCGGCTTCGGCTGGATGAAGCTGCACGATCAGGGGGAGCAGTTGCGTGTTTTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGTGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTTGCCAGGAACGGCCTGGTCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2745948-2743472 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017420.1 Delftia tsuruhatensis strain CM13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2745947 32 93.8 36 CC.............................. GGGACCGGATTACCCGTAGGAATGAAAGTGGGCTGC 2745879 32 100.0 34 ................................ ATCCTGCGCCTCTCGATCGCGCTGCCTCTGCTCA 2745813 32 100.0 34 ................................ ATCTGCACACAGCCCGGCGAAATGCCCTGCCAGC 2745747 32 100.0 35 ................................ TGCGCAGTGCAGTGCGGCGCGACGGGCTTTACCGC 2745680 32 100.0 34 ................................ AACGCGACCCAGATACACACGCGCCACAACATGC 2745614 32 100.0 34 ................................ TACCTGCAGCCATCCGTTGGCGCGCAGGTTTGAC 2745548 32 100.0 34 ................................ TTGATTTTGAGGAGTGCTTCGTCGCGCGTCATAC 2745482 32 100.0 34 ................................ CTACTTAGGGAGCCTCAAGGGATGGGTCAACCCA 2745416 32 100.0 34 ................................ CGTTTGCAGCCTGTGACTCCAGGCGCGAGCACAT 2745350 32 100.0 33 ................................ CACCCCTGGCTGATGCCGATGATCTTGTCCTGC 2745285 32 100.0 35 ................................ GCAGCCAGCACGGCCGCCAGCGTGACAATGGCACC 2745218 32 100.0 34 ................................ GGCCCATGGTGCGGCCCGGCATGGACGGCCAACC 2745152 32 100.0 33 ................................ GGCTCCAGCAGGTTGTCGTTCATCGCTGCCAAC 2745087 32 100.0 33 ................................ GCTCCTGAGCCAGATCGCAGGAAAAGTGGTTGC 2745022 32 100.0 34 ................................ CCTATCTGTGATGGTCCTGGCCTTTTATGTCGCC 2744956 32 100.0 34 ................................ GTCGTCTCGGTGTGGCGCGCGCTTGTCGTGCCAG 2744890 32 100.0 35 ................................ GCAGGTGAAGTCGCCATCAACTTCGGCAACCACGA 2744823 32 100.0 34 ................................ AGCGCGGCCGCGCTGGCACGGTGGAGCGAGCTGT 2744757 32 100.0 34 ................................ TTGGCCCAGGGCGTCAAGGGTCGTCATGGCCGAC 2744691 32 100.0 33 ................................ GGTGGATGGTGTGGATCGGCCCCTTTTGGGGAT 2744626 32 100.0 35 ................................ CATCGACCAAGTGATACACAGTGATACGGTGTAGT 2744559 32 100.0 35 ................................ CATCGACCAAGTGATACACAGTGATACGGTGTAGT 2744492 32 100.0 34 ................................ CTTGAACCATTGACCCACGGATGTGGCGGCGCCC 2744426 32 100.0 35 ................................ GGTCTGAAGTCCGGGTCCTCCAACTTGAAGTACTC 2744359 32 100.0 35 ................................ GGTAATGGGTGGCTCAAACAGCGCGCGGGCGATGG 2744292 32 100.0 34 ................................ GCATAGGGCAGGTTGTTCAGGATCCAGATGGTTT 2744226 32 100.0 34 ................................ TTCGTTGATTTCAAGCTTCCAGCACGCGAGGCTC 2744160 32 100.0 34 ................................ TAGCATCTGTATATCCATACAGCAAAGGAGTTCG 2744094 32 100.0 35 ................................ AGTCACCCAGCCCGTTGAGGCGCCATACCCTGCTG 2744027 32 100.0 34 ................................ ATCGCATCGCGCACGATCCCAGTAGTCGCGCCGG 2743961 32 100.0 34 ................................ ACGGCGTGCTCCACAAAGCCCACCCCGCCCTCGC 2743895 32 100.0 33 ................................ TGCTGGTCGCTGGGCTTCAGACCCAGAGCCTTG 2743830 32 100.0 33 ................................ GACCCAGCTCCACGCTGTACCCGTGCAGCCCCT 2743765 32 100.0 34 ................................ ATCGCATCGCGCACGATCCCAGTAGTCGCGCCGG 2743699 32 100.0 34 ................................ ACGGCGTGCTCCACAAAGCCCACCCCGCCCTCGC 2743633 32 100.0 33 ................................ TGCTGGTCGCTGGGCTTCAGACCCAGAGCCTTG 2743568 32 100.0 33 ................................ GACCCAGCTCCACGCTGTACCCGTGCAGCCCCT 2743503 32 93.8 0 ...............AC............... | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 99.7 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AGCCCGGCGATAAGAAATGAGGTGTGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCCGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAATACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAACCTCCGCGCGAACCCCAAGTGACCGCCACCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGTGCGAGGGATTGGCTGAACGCCGATTCCGCGGCATGACAGCGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTAC # Right flank : CCCTGCCACCACAGCAAGCGCCACATGCATTTGAAACGAATCGCCTGACTCACTCCTCGCCGCGCAGACCGCCATTGAGAGAGAGTCCAGCCACTGCCTGCAGCAGGTACCCGCGTGCCTCATCCAGCGAGGGACCCGCATGCCCATCGATCCGCCGGATATAGGGAGATGTGAGCACAGCCAGGGCATGGCCATCGGGCCCGAGGATGGGGCAGGAGATGTCCACCACGCCATAGGACTGCAGGCTTTCGCTCTGCTTGTGACCCGTGCTGCGTATCTGTTCCAGCATGTCGTGCAGTTGTGCCTCGGGCAGATGTACCTCGCCTTCCAGCGGCGTGTGCTCGGCCAGCATCTGCGCGCGGCGTTCGGGTGTCTGGCAGGCCAGCAGCACATGGCCTGACCCGGTGTCCAGCAGCCCGACGCGTGCGCCCAGCCTGATTGACAGGCCCCAGTTCCCGGGGCCGGGGACCTGGGCCACGATCAGGACATTGCCACGGTCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3980386-3976468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017420.1 Delftia tsuruhatensis strain CM13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3980385 28 100.0 32 ............................ GATTTGGACTCGTCGCAGGACTTCAGCTCGCA 3980325 28 100.0 32 ............................ AGGACAAGGGCCACGCCGTCACGGTGTACCCC 3980265 28 100.0 32 ............................ TTTGCCACGGGCGGCGACCTCGACCACCTGGC 3980205 28 100.0 32 ............................ ATCTCGCGCGACGACATCAACCTGAGCACCGC 3980145 28 100.0 32 ............................ TGCCACGCAATGGCCGCACAGCCGCTGGCGCT 3980085 28 100.0 32 ............................ GCCGTGTGTTCGTTGTCGCAAGCGCTCGAAAC 3980025 28 100.0 32 ............................ TCGTCAAAGTATTGAGAGACACGGCCCTTACT 3979965 28 100.0 32 ............................ TTCATCGACGTGCAGATGCAGGAGGACCAGGC 3979905 28 100.0 32 ............................ TCAAAGAGCGAAGAACTCTTCTCAACATCGAC 3979845 28 100.0 32 ............................ CAAGACGTTCAAGCTGCGCTACCTGCCTGGCG 3979785 28 100.0 32 ............................ TTAGCCTTGTCAATCAAGCCGCGCACCCATTC 3979725 28 96.4 32 ........A................... AAGACGCTTCGCAAGCTCCTTGGTGTCGACCT 3979665 28 100.0 33 ............................ GCAGTCAGCATCGGGTTCCGAGTGCTGGATGGC 3979604 28 100.0 32 ............................ GTCATGCTGAGCGATGCGCCGCCCACGTTGAG 3979544 28 100.0 32 ............................ AGTTCGGCGCGCACCAGGCGCATCTTGGTCTC 3979484 28 100.0 33 ............................ CTGGCCCATGTCGCCGCCTACGCTCAGCACCAG 3979423 28 100.0 32 ............................ GACGCCTCGGCCCTGGACACCATCCTCAACGA 3979363 28 100.0 32 ............................ TGGGCGGCCTCCACCGGCCCGGGCTCGTCATC 3979303 28 100.0 32 ............................ AAGAAGGTCGGCAAGTCCGCCGAGCACGTCCA 3979243 28 100.0 32 ............................ GGCATGGCAATAGATGCTGCGGCGGCCCAGGC 3979183 28 100.0 32 ............................ CACCCCTCATCGCGCGAGACCTGCCCGCCCAG 3979123 28 100.0 32 ............................ ATCCCCCGACCTGATGACGTGACCCCTCAAAC 3979063 28 100.0 32 ............................ TTTGAGGACCAACGCCACTTCATCGGTTTGCT 3979003 28 100.0 32 ............................ TGTCCTGCAGCGCCTGCAGTGCGGCTGATGCA 3978943 28 100.0 32 ............................ TGATGGCCGCAGCACCTCAGATGCTCGCTGCC 3978883 28 100.0 32 ............................ TTCAACCCCGACCCCGATGCCCGCTACCTGCG 3978823 28 100.0 32 ............................ GGCAGAGATCTACCGGAACGTGTTGTTGGATG 3978763 28 100.0 32 ............................ TTCAAGGTATCGCGTGTCTGTGTGCTCATGAG 3978703 28 100.0 32 ............................ TGTTGTCCGGGTGCTCCTCCTTCACGAACGCG 3978643 28 100.0 32 ............................ TGCGGCTACGACAGCACAACGAACATGACAGC 3978583 28 100.0 32 ............................ TGAAAAGCTAAACCCTCCGGGAGGGGCGGGTT 3978523 28 100.0 32 ............................ TGTGGAAACGCATCTTCCACGAGGAAGGTCGT 3978463 28 100.0 32 ............................ TATTCGTGTTTCAAGGAGAGATAGATGCCTGA 3978403 28 100.0 32 ............................ CTTGTCTATCCCTGAGCGTTCTGGCTGCTCAG 3978343 28 100.0 32 ............................ GTCCACGCCTGCGGGTCAAGCAGCAAGCCACC 3978283 28 100.0 32 ............................ CTCAGGGCGTGGTGCCCATGGAGTTCATCGGC 3978223 28 100.0 32 ............................ GCCGTGTGTTCGTTGTCGCAAGCGCTCGAAAC 3978163 28 100.0 32 ............................ AACGGGAGCGATTTGTAAGACGCGCAAATCTC 3978103 28 100.0 32 ............................ TGCCCGCTGCTGCAGCGCGCAGGCCACGTCAT 3978043 28 100.0 32 ............................ AGCGAGCCGCTCCTTGTCCCCTCTATTCACAA 3977983 28 100.0 32 ............................ TCGGCCAGCTCCAGGGCCAGCCATCCCGAGCG 3977923 28 100.0 33 ............................ CAACGGGATCAACCCCGACCACGAATCTGCCCC 3977862 28 100.0 32 ............................ TGCCCGTGCCGGCGTACAAGCTCGGCGGCCAG 3977802 28 100.0 32 ............................ GTTGCGGCGCCTTCGGTTTTTCAACACAGGAG 3977742 28 100.0 32 ............................ TGTGATTGCCACCAGATCCGCGGCTTCGGCAT 3977682 28 100.0 33 ............................ CAGGTGGTGCACGGCAGTTTCGTGGGCGCTGCC 3977621 28 100.0 32 ............................ ATCAGATCACCCTGAACAGCGTGTCGGCCCGG 3977561 28 100.0 32 ............................ GGCTGCGCTGATGCCGGCGCACAGGAGCCCAC 3977501 28 100.0 32 ............................ TTCAATCACTCTCAGTGTGGGGCGCGTTTCGG 3977441 28 96.4 32 .................A.......... AGCGACTCGGGCGTGAACTTGGTCGGGTCGAT 3977381 28 100.0 32 ............................ AGTCCGCTGGCGGCTCGGCGCCGTGGAAGGTG 3977321 28 100.0 32 ............................ TGCACATCAACCCGGGCCGCGAAGTCAGCAAC 3977261 28 100.0 18 ............................ TGTCGGGACGGCCGAGCA Deletion [3977216] 3977215 28 64.3 32 .CG.AT.CGT..GCG............. ATCGACGGCACAGTCGTATCGATAGCGCCGCC 3977155 28 100.0 32 ............................ TTGCGCACGGCCACGCCGAAGAAGTCCTCGCA 3977095 28 100.0 32 ............................ CAGCGCCTCGCGGAGCCGGGGGGTGTCCACCT 3977035 28 100.0 32 ............................ TTCTTCAGCAGTGCTGTGATTGCTTCCTGTGC 3976975 28 100.0 32 ............................ TTGGAGCAGACAAATGATGTGGCTCGACTCAC 3976915 28 100.0 32 ............................ CAGTCAATCTCTAGAGCGGATGCCAGCCAGCA 3976855 28 100.0 32 ............................ ATGACATACCGCAACCGTGACCTCATCCGTGA 3976795 28 96.4 32 ............G............... TGGGCCGTGTAGTGCGTAGGCATTTGGTCCGT 3976735 28 96.4 32 ............G............... ATCCCAGGTGCGGCCATCGAGCTGGCGGCCCG 3976675 28 96.4 32 ............G............... AAGCAAATGCAAGGTGTAGGCCGGTTTTCTTT 3976615 28 92.9 32 ............G.........T..... AATGGCGCGGAGAATCAGCAGGCCATCAGCTG 3976555 28 96.4 32 ............G............... TCCCCAAAGATTACCGATCTGGCCTGCGAGTT 3976495 28 96.4 0 ........A................... | ========== ====== ====== ====== ============================ ================================= ================== 66 28 99.0 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : CGCGCTGCGCGGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCCGCCAGCTTTGGTACCAGAGGGCGCCGTGCCCTGCCTGGTGCAGCGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGACGCCGCATGCGGCGCAAGGGAGAAACCGCTGAACAGGCCGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCACGGCGGGCCAGGAAGGCTTCAACACCTACGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGAGCCTTTTTTCTGGCGGCCTGAAGACTGCCTTGTAAATCAACAGCTTGGCGGATGCCCCGGAATTTGGGGTATTTGCGGGTTTGGGGGGGAAGTTCTTTAAAAATCAATGGATTGGGAGGTTTTTTGTCTA # Right flank : GCACGCACCCCCTCTCTTGGCTAGCCAGAGGCAGATGCGCGACTACGCGGTGCCCAATGCGATCCGGTTAAAGGCCGTGACGGCAATGAGCGAACAGACCGGCGCTCTCACGGAGCCTGCTGGTGCCACGCGGCAGCAGGGCGCCGCGCCTAATTCACCCGGCTTTCCTCCACGTGCTCCACGAAGGAGGGCGCTTCATTGAAAAGTTGCACGAGCTGCGCCAGGCGCAGGCCATAGGCGCATTGGGGCCGGCTGAACGCCTGGTCGGCCAGGACGATGGCGGCGCGGGCGAGGAACCAGGCGTTGTCAAACTTCCATGCCGCGTCGAAGTGGGTGAGCTTCATCTGCCGGATGTGGTTCAGGGCCAGTTCCGTGGCCATGTCCACGTCGGCGTCTTCGTCAACCCAGTCCATGTCTGCGCAGCGCTGGTCGATCAGGGCGGCCAGCTCGGTTTCTGCGCGGTCTATGGACAGGGCAATCATCTGCTGCATGCTGGGCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //