Array 1 108018-107562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVEM010000017.1 Nocardia farcinica strain JNQH326 NODE_17_length_126049_cov_27.829742_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108017 29 100.0 32 ............................. TGGCCGCCGATGGGTACGTCGCCAGTCACGAT 107956 29 100.0 32 ............................. TGACCAAGCGGTTCCCGTCCCGCTCCAAGTAC 107895 29 100.0 32 ............................. CAATCCTTCCTCTCGAAGGATTCGAACCGCTT 107834 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 107773 29 100.0 32 ............................. GGGTTGACACTGGTCCGCAACGAGACCGGTAA 107712 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 107651 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 107590 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGGCAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCCGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCCGTCGCGCTGTGCGGGGTCGAGTTCATCAGGCCGAACACCGCGTGGGCTCGTACGCGGGCTTCGCCTTCGGGCAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115727-115211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVEM010000017.1 Nocardia farcinica strain JNQH326 NODE_17_length_126049_cov_27.829742_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115726 29 100.0 32 ............................. ACCACCAGTTGCCATCGCTGCAACTCCACTCG 115665 29 100.0 33 ............................. GTGATGTCCTGCAAGGTGTACTCGAGGATGGCC 115603 29 100.0 32 ............................. GCGATCAGCTGATCGACCAGCTCAACGCCGCC 115542 29 96.6 32 ............................G GGTCCGCCTGGGTGACGCCCGGCGCGGATGGC 115481 29 100.0 32 ............................. GGATACCGACTCGTCGAGGAGGCGTCGTGAGT 115420 29 100.0 32 ............................. GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 115359 29 93.1 32 ..........................TT. CAGTCATGAGCGGCCGCCGGGTCCGGTGTCCA 115298 29 93.1 31 ...A..................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGAA 115238 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : TGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGTTGGTCCGGGCTGCGGTGGCGATGGGTCGTCGACGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCCTCAGCGAGGTTGCCCGTCTTGTCCCTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACCCGCAGGCCAGGAAGT # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACCTCGTCGACTTTGCCGCTGGGCAGTTCCCAGATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGACATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCTGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 209770-209914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVEM010000002.1 Nocardia farcinica strain JNQH326 NODE_2_length_601049_cov_27.982977_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================= ================== 209770 26 100.0 33 .......................... CCCGCGGACTCGGTCGAGCACCGGTTGGCCGTG 209829 26 100.0 33 .......................... CCGGACCGTGTAGGCGGGTTCGAGGTCGTCCAC 209888 25 96.2 0 .........................- | GC [209903] Deletion [209913] ========== ====== ====== ====== ========================== ================================= ================== 3 26 98.7 33 GTGCTCCCCGCGCATGGGGATGAGCC # Left flank : TGTTCAGCCCGCTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTGTTTATTTTCTTGGGCCTCGTCCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCCGGCCCGGGACTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGCGCGGAGGCCGTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAGGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CCCGGTCGGTGTGGCCATGGTCAACAGCTCCCGCAGTAGCCTGTCACCTCGTCGTCTCGGCTGGTGATCGGACGACGGTGCTCGTCCGGTGCCGCCCGTTCAATGGTGATCTCGCGTTCAGTTGGTGTTCCGATAGGTGGCGAGTGTCTGTTTGACGGCGTCGGTGACGGGCGGTTCTTCGGTGAGTGAGGTCCAGCTGTAGGCGTCATGTTCGGTGAGCCGGACGGGTTCGAGGGCGGCACATCGGACGGCGAAGTTGAATTGGCGGCTGTGTTTTCCGCTCCCGGAACGGTAGTCGAAGCTGTCGATGTAGCGGCCGATGCCGGTGATCCGAAGGCCGGTTTCCTCTTCGACCTCGCGGGCTAAGGCTTGGTCGATGCTCTCTCCGGGCTCGACTTTGCCGCTGGGCAGTTCCCAGATACCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211116-211815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVEM010000002.1 Nocardia farcinica strain JNQH326 NODE_2_length_601049_cov_27.982977_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 211116 28 100.0 34 ............................ CTCGCCTGCACCCGAAATCACCGGTCCCACAGAG 211178 28 100.0 33 ............................ CGCCGATCACCTGACCGACCGTGCGCCGCTCCA 211239 28 100.0 33 ............................ CTCGGGCCGCCACGCAGGGCCCAGGTCGGCACT 211300 28 100.0 33 ............................ CCTCAGCCCCAGCTCGGCCGCCGAACAGCCCAT 211361 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 211422 28 100.0 33 ............................ CTCCCTTGGACTGCTGATCCGCCGCGCTCATCG 211483 28 100.0 33 ............................ CGACTGCACGATGCCGGCCTGCCCGATTCCCTC 211544 28 100.0 33 ............................ CGGAGCGCCAATGTCCACCACGCAGTACGCCGC 211605 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 211666 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 211727 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 211788 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================== ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGAAACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : CTCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 214176-215074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVEM010000002.1 Nocardia farcinica strain JNQH326 NODE_2_length_601049_cov_27.982977_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 214176 29 100.0 32 ............................. TCGGTTTCCGTGGCCCTCTGCCGCCGCTGGAG 214237 29 100.0 33 ............................. CCACAGCAGCCAACCCAGCGCGGCCATCACTGC 214299 29 100.0 32 ............................. ACCGAACGAGCCCGGGCGCAAGGGTTCCCGGA 214360 29 100.0 32 ............................. CGGTGCGCGATGCCCTCGGCGTAGCAGTGATC 214421 29 100.0 32 ............................. CCAAGTTCAACCGCTCCGAGCTGCTGGCGGCG 214482 29 100.0 32 ............................. CAGGCGCTCACCGAGAAGGTCGCCGAGGATGC 214543 29 100.0 32 ............................. CCGCCTACGTCGCGCGGTTCGGCGAACGCATG 214604 29 100.0 32 ............................. ACCATCCGCTGCTGCTCCTCACTCGCCAGGCG 214665 29 100.0 32 ............................. CGTCCTGGGGTGTCCCGGGACATCCTGCTCGG 214726 29 100.0 32 ............................. GCTGGGAGACCGCGCGGTGCGATCCAGAGCGA 214787 29 100.0 32 ............................. GTGAGGGGACTGCTCAGTGCCAATGCCGCCGT 214848 29 100.0 32 ............................. CCCACCAGGTGATCGGGCACCACCTCGACCTG 214909 29 100.0 32 ............................. ACGGACCGGCAGGGCTACAGCAGCGCCGAGGT 214970 29 100.0 48 ............................. CCCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTCGAC 215047 28 72.4 0 A..T....G..A..T..-C........A. | ========== ====== ====== ====== ============================= ================================================ ================== 15 29 98.2 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : AGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGACTGTCCGATCGACATCTCCTGCGATTCTGACAGTGTGGGTCTGGGACGAGTCCCTCACTGCGTTGACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACCTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCCCCCGAGGCCTACGACCGTGAACGGGTCAACAGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTGCCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 224259-225872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVEM010000002.1 Nocardia farcinica strain JNQH326 NODE_2_length_601049_cov_27.982977_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 224259 28 100.0 33 ............................ CTCGAGGTGCTCTGTTTGTTGACCGGCCGCCGA 224320 28 100.0 33 ............................ CGCGCTGATCACTGCGGCCGACTGCGGGGAGGT 224381 28 100.0 33 ............................ CCCCATCGCCATCAGTTCGTCCGCCTCCGTGTT 224442 28 100.0 33 ............................ CCCACCTACTTCACTCCGCCCTGGGCGGCCTGG 224503 28 100.0 33 ............................ CCAAGCAGCTACCAGCGGGTGAACGGCTCCCCG 224564 28 100.0 33 ............................ CCGAATGAGCTTGCCCTCGTGGGCATTTAAGGA 224625 28 100.0 33 ............................ CTCGTCGCGCATCAGCGCCGCGCGTGTGACGAA 224686 28 100.0 33 ............................ CCGGTCCCATTCCGCATCGACGTCAGTCACCGC 224747 28 100.0 33 ............................ CGATATCCGCGTCCAGGGCCAGAACTGGGCCCA 224808 28 100.0 33 ............................ CGGGATTCTGAACCGGGTGAAGCCGGGTTCGTG 224869 28 100.0 33 ............................ CTAGGCAGGATCGCTAGCTCAATTGGCAGAGCA 224930 28 100.0 33 ............................ CTCGACGGAGCAAGTAGCGGACGCTCTCGAAGA 224991 28 100.0 33 ............................ CAGCCGGAGCCGGGGCCACGAGAGAAGGACTTT 225052 28 100.0 33 ............................ CAATACAGGATTTAAGGTAGGAACTACCAACAA 225113 28 100.0 33 ............................ CAGCAGCGCCAGCCCGTGCGTGTCGGCCAGCAG 225174 28 100.0 33 ............................ CCATGACCATCACCCCCGCCGCGACCTGCTCCC 225235 28 100.0 33 ............................ CTCGGTCACCGGCTCGATCTCACCCAGCAGGAA 225296 28 100.0 33 ............................ CTGGGCGTCGAACATCACGCCGGTGCCCTCGGC 225357 28 100.0 33 ............................ CTCGGAGGCGGTGCCTTCGCCGCGGTACTCCAG 225418 28 100.0 33 ............................ CGACGACGTCTTCGCCCAGACCGGTAGCGGCCG 225479 28 100.0 33 ............................ CGCGCAAAAGAACCTCGTGCCCAGCGGCGACAT 225540 28 100.0 33 ............................ CAGCCCAGCGCAGCGACCACCCGATCAGGTGGG 225601 28 100.0 33 ............................ CCAGGCCGTGGCCGACACGTCGTAGACGCCGGT 225662 28 100.0 33 ............................ CCGCGATGCGCCCGAGCTGCAACGCCTTCCCGC 225723 28 100.0 33 ............................ CTGGAACTGCGACGAGTGGTTCTCCTGCGGCGA 225784 28 100.0 33 ............................ CCCGATGACCGCCATCCCGCCACCCAAGCGGAC 225845 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCTCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCGGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGGAGT # Right flank : CCTCGGAGGTAGTCACCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGTCATCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGCGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCATGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTTGTTCTTCCCGGCCTGGGTGCGGTGTTGTCGGCGCCCGGTCTCCCGGTCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 339443-340446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVEM010000002.1 Nocardia farcinica strain JNQH326 NODE_2_length_601049_cov_27.982977_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 339443 28 100.0 33 ............................ CCCTCGACGGCCGGTTTCCAACACAACAGACAG 339504 28 100.0 33 ............................ CAGCGCTGTGCCGGTGGGTACGGCGAGCGCGAT 339565 28 100.0 33 ............................ CAAGGGGGTGTTCCTGGTGGACAGCGAGGTCAA 339626 28 100.0 33 ............................ CGCCAGCCGATCGGGGCGAGCTTCGACGTCGGC 339687 28 100.0 33 ............................ CTAGAAATCTCGGATCTGAAAGGACGGCTCTCA 339748 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 339809 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 339870 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 339931 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 339992 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 340053 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 340114 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 340175 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 340236 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 340297 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 340358 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 340419 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAGCCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGGCCCGCGTCCTCGACCCTCGGGTGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //