Array 1 3505865-3504430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022069.2 Salmonella enterica subsp. enterica serovar Hadar strain FDAARGOS_313 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3505864 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 3505803 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 3505742 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 3505681 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 3505620 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 3505559 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 3505498 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 3505437 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 3505376 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 3505315 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 3505254 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 3505193 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 3505132 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 3505070 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 3505008 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 3504947 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 3504886 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 3504825 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 3504764 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 3504703 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 3504642 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 3504581 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 3504520 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 3504459 29 100.0 0 ............................. | A [3504432] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3524404-3522546 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022069.2 Salmonella enterica subsp. enterica serovar Hadar strain FDAARGOS_313 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3524403 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 3524342 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 3524281 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 3524220 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 3524159 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 3524098 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 3524037 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 3523976 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 3523915 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 3523854 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 3523793 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3523732 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3523671 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 3523610 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 3523549 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 3523488 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 3523427 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 3523366 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3523305 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3523244 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3523183 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3523122 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3523061 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3523000 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3522939 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3522878 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3522817 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3522756 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3522695 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3522634 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3522573 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //