Array 1 258288-259339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXG010000001.1 Listeria marthii strain FSL L7-0367 NODE_1_length_922566_cov_101.878723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 258288 29 100.0 35 ............................. TTTTTCTGTTGATTTCCATTTTCGTATCTGATTAG 258352 29 100.0 35 ............................. GAAACTTACGACGTCGTTAACAGTTATGGACAAAC 258416 29 100.0 34 ............................. CCCCCTGTATCTCCTGTAATCAACTCGTGTATAG 258479 29 100.0 34 ............................. TAGAAATAAAAAGTTGAACCCGTTTTTTTGTGGG 258542 29 100.0 35 ............................. AAATGACCCCCACTTGTGTTTTGAATTGAACTTTA 258606 29 100.0 37 ............................. TCGTCAAAAACAAAAAAAGGTTCAATTTTTCTATCTG 258672 29 100.0 34 ............................. TATGAATGGGTAAATGAATATGTAGATAGTAAAC 258735 29 100.0 35 ............................. CTAGAAATCACTTGCAGATTCCCAGTCAATTTTTT 258799 29 100.0 35 ............................. AACGTTAATGAAGACTGATATTGAAAAAGCAATGA 258863 29 100.0 34 ............................. GCTGGTAGAAGAATATTATTAATAGATGGCGAAG 258926 29 100.0 34 ............................. TCGCAAGGTCCTTTCAATGTACTGTAACTTATCT 258989 29 100.0 36 ............................. ATCATTAGCGCACTTACCGGTTTGAAAGATGCGTTT 259054 29 96.6 34 ..A.......................... AAAAACATATTTAAATATCCCTACGCTTTTAAAC 259117 29 93.1 35 ...C..........A.............. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCAT 259181 29 100.0 35 ............................. GAGGTTGGTTTTGATTGCTCGGGACTAGTTCAATG 259245 29 96.6 37 ..............A.............. GATGACAATAGAGGGATTTTGATTGAAAGGTCTGGGC 259311 29 89.7 0 .......T........A......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 17 29 98.6 35 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACTACTTCGGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACTGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGCAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGTGTGAAAAAGGCTGGGGATCGACAGAAAGGTGAGAATGGTTGGAGTGAGGGGAGTTTGGTGCTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TGAGATTCCAAATTTTCCATTCCCTACACAAAAAATCCAACCAACATGATTTAGGCTTATTTTTTATCCTCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCTAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTCAGAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 274283-277358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXG010000001.1 Listeria marthii strain FSL L7-0367 NODE_1_length_922566_cov_101.878723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 274283 29 100.0 36 ............................. TTATGATTAATTCATCGGATTGGCAAGTGTGAACGA 274348 29 100.0 37 ............................. AAATAACTCGGTTGCTTTGTTCCATGACATTCCTGCG 274414 29 100.0 35 ............................. TTCGGTTTTGAAGTTCGTAATCTTTTGGGTACATA 274478 29 100.0 36 ............................. AATGGCATCGGCAACTTCACATAATAAAGCGGCTCT 274543 29 100.0 35 ............................. CTCCTTTGGCTCGACACTTCAATGCCATATTCGCG 274607 29 100.0 38 ............................. TCGGCACTTCGTTTACAGCCTTCTGGATTGTTTGAAAC 274674 29 100.0 34 ............................. CTGTTTGGAAAACGTGCGCGCCAGCCTTCTTTTT 274737 29 100.0 35 ............................. ACGGCACTAATGCTCTTACCAGTATTTTGCATTTT 274801 29 100.0 34 ............................. TTTAGAAAAGCCACGTATTCCGCAATTTCTTTAT 274864 29 100.0 35 ............................. TTTGTAATGCTACTACCAATAGCTGGAAGTCTAAG 274928 29 100.0 36 ............................. ATTGCTAGAGTCAAAAGTAGAAAAATATTTAAGAGA 274993 29 100.0 38 ............................. AATGCTTTTGTGGATAATAAACGAATTGATAACGCTCT 275060 29 100.0 35 ............................. GTACCAGTTCGAAGTACGGGTTACGCAGAAATGAC 275124 29 100.0 35 ............................. TTCGGAATGCAAAGTCAACTAAAAAAATATTTCAA 275188 29 100.0 35 ............................. TCTTCTGTTCGACTTCTGCTACATACAGCATTAAG 275252 29 100.0 38 ............................. GCTGAATAAGAACTACCTTTTCCGCTCGAAATCCCTCC 275319 29 100.0 35 ............................. TTTATATATACCGAACCAGACAGATATACACCAGC 275383 29 100.0 35 ............................. AGCTTATTACGGCATCCTTAGAGGCGTTGAATATG 275447 29 100.0 36 ............................. CTTAATTTTACCTGAATTTAGTCGCGTGTTATCCCA 275512 29 100.0 36 ............................. AAAAGAGAAGAGCGAAAGGATGTGAGAGTCGATGGC 275577 29 100.0 37 ............................. TTAGCAACAACTTTCAACCAACTGCAAGGTTCCGTTG 275643 29 100.0 35 ............................. CCTAAATAACTTATTTTCGTTCGCGCTCCAACTGG 275707 29 100.0 34 ............................. AAGGCAGAGAACTTCGTTGGACTTCGTATAACTA 275770 29 100.0 37 ............................. ACAGTTCTGTTTTGTCCGCTTTCTGTAAAATAAAACG 275836 29 100.0 36 ............................. GTGATTAAATCGGTGGCTTTGTCAATTGCAAGCTGT 275901 29 100.0 37 ............................. ACGAGTGCGTCAAACACTGCGGTCACAATCTGAACAA 275967 29 100.0 35 ............................. GGCTTAAAGTCATTTTCAACTGTAGGTCCAAATAA 276031 29 100.0 34 ............................. TCATGACCAGCGCAGTTTTAAAGCGTCGCACATT 276094 29 100.0 36 ............................. AACAAAGATACGCATTTTGTTCGATGCAATGTAAGT 276159 29 100.0 36 ............................. AGTCCAAAGACAACGAATATCACGCCGAACAATATC 276224 29 100.0 37 ............................. ATGTTTGCAAAAGCAATTTTGTCCATTCGAAATTCTT 276290 29 100.0 36 ............................. ATCTCTACGCTGGAAACCGAGAAAAGAGCAAGCATA 276355 29 100.0 36 ............................. CATACTAAGTTGTGGAGGGACAGCGAATTATGAGAG 276420 29 100.0 37 ............................. TCGCTTGAAAATAAATTGGATATTGATAAGTATATAA 276486 29 100.0 35 ............................. TTTTGATTTTAAATGTGAAATTGATACATTGGAGG 276550 29 100.0 36 ............................. GCGGCCAAAAACGCGGGCAAGGGTGTAGCCAATAGC 276615 29 100.0 37 ............................. ACAATTATGCCAATTACAGGTAGCATTGCTGTAACTA 276681 29 100.0 35 ............................. TTGCGTGCTTCTGTGGAAAATCTTACACTAGAAAA 276745 29 100.0 35 ............................. TGTTTACGCTGAATAAGAAAAGTAGATTCACCAAT 276809 29 100.0 37 ............................. TATATACTCTTCTACGTTCAGTATTCTTTGTACTCAC 276875 29 100.0 34 ............................. TCCGATGAAGAGGTTTCGACTTCCACGGAAAATT 276938 29 100.0 37 ............................. AGCGCCCGCACTGGGTCTTCTTTCGCTTTATCAAACC 277004 29 100.0 35 ............................. AAAAAAGAGTACCTGGGAAGCGGCAACTTCACAAA 277068 29 100.0 36 ............................. AAGGTCACAGCTAAGTATATGTCTAAGCTTCTTTTT 277133 29 100.0 38 ............................. TGTACAGAATCAATTAGGTTAGATACAAATTGTGTACG 277200 29 100.0 35 ............................. CAGCCAGAAAAAGAGCCAGTGAAAGAAGAGCCACA 277264 29 100.0 36 ............................. TTTGTCCAAGCTAAAAAGAATAAACCAGTTAAGCGC 277329 29 86.2 0 ...............C......CA....C | C [277351] ========== ====== ====== ====== ============================= ====================================== ================== 48 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : ATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTCAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATAGTTTTTTCTAGTAGACAACAAAGATGGTTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGAGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAAGCGCCGGCAACCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCCCCAGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //