Array 1 109811-107829 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBP01000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2721 NODE_11_length_182186_cov_5.48652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109810 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 109749 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 109688 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 109627 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 109566 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 109505 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 109444 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 109383 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 109322 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 109261 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 109200 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 109139 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 109078 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 109017 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 108956 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 108895 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 108834 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 108773 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 108712 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 108651 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 108590 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108529 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 108468 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 108407 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 108346 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 108285 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 108224 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 108163 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 108102 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 108041 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 107980 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 107919 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 107858 29 100.0 0 ............................. | A [107831] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129546-127443 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBP01000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2721 NODE_11_length_182186_cov_5.48652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129545 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 129484 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 129423 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 129362 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 129300 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 129239 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 129178 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 129117 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 129056 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 128995 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 128934 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 128873 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 128812 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 128751 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 128690 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 128629 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 128568 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 128507 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 128446 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 128385 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 128324 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 128263 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 128202 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 128141 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 128080 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 128019 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 127958 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 127897 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 127836 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 127775 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 127714 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 127653 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 127592 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 127531 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 127470 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //