Array 1 286-1395 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXC01000002.1 Pseudomonas aeruginosa strain VET-60 PA2_G4_NODE_300_length_6833_cov_23.8662_ID_599, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 286 28 100.0 32 ............................ TGCTCGCCGAGGCTCGGTGCTCGCCAGTGCCG 346 28 100.0 32 ............................ TGACGGCCAACTGCCGGCGTACACCGCCGCCG 406 28 100.0 32 ............................ ATCACCACCGCCACCCGTACCGCCATCACCGC 466 28 100.0 32 ............................ ACCACCCGTACCGCCACCATCGCCGCCAGTAC 526 28 100.0 32 ............................ ATCCGGCGCAATCGAGATGGAGCCATCGCAGG 586 28 100.0 32 ............................ ACGAAGTAGAAGCTGTCCGGCTCCAGCGTACC 646 28 100.0 32 ............................ ATCGAGCACGACACACCCAAGGCGTTCAGTGC 706 28 100.0 33 ............................ GTCAGCGTTCGCCAGGGTCCGGCCGTGCGCCTC 767 28 100.0 32 ............................ AGCAGGATGATGCGCCGAGCGCCCCATAGGGC 827 28 100.0 33 ............................ GCCGGCGGCGTCTGGCTCGGCGCGCGGCACTAC 888 28 100.0 32 ............................ AAAAGGGGGAGCGGGTAACGACCGCAGAGACG 948 28 100.0 32 ............................ AGGAAGAGTCCGACATCGGCCGCGAGGGGATC 1008 28 100.0 32 ............................ TAGGATGCTCAAGGTTAAACGCTGAGTTAACC 1068 28 100.0 32 ............................ AGCGGCCTGACAAGCCCCCTGTAGCGCTGGCG 1128 28 100.0 32 ............................ TATCGTGGCTACGCCGCCGGCGGCGTGTACTG 1188 28 100.0 32 ............................ ATGGTTGATCGTCGCGCTCGTTGCGATGGGGA 1248 28 100.0 32 ............................ ATCATCATGTCGAGGCCGATCATTGTTTGGTT 1308 28 100.0 32 ............................ TGATGAACCGGATTACCGAGCGCGGCCTGGCG 1368 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCCGAGCCTGTAGCGTCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGCCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGAATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5042-5730 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXC01000357.1 Pseudomonas aeruginosa strain VET-60 PA2_G4_NODE_73_length_21706_cov_20.9342_ID_145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5042 28 100.0 32 ............................ CTCAACAGGCTCGAACACATCGGATGACCACT 5102 28 100.0 32 ............................ TCGGGCATCGGTTGGCGGCCCTGGGCGATGGC 5162 28 100.0 32 ............................ GTGTTGGCGGCGTACCAGGGGAATGGCCTGGC 5222 28 100.0 32 ............................ TGCAGCAGCACACGCCGCGACCTGCGCATGGC 5282 28 96.4 32 ......................G..... AGATCGAAGCTGCCGTGTACGCAGTGAGAACC 5342 28 100.0 33 ............................ ATCAGGACGTGCCAGATGATTCCGCCAGTGGAC 5403 28 100.0 32 ............................ AGAAGGGGCACGAGAAGCAACCGCTGAAGCTG 5463 28 100.0 32 ............................ ATAGGTCGGCGTCGACACGACGGTGATATTGC 5523 28 100.0 32 ............................ AGAACCCCCTACACTGGCGGCCGCGCGAACCT 5583 28 100.0 32 ............................ TGCGACATGCTGGTCCGGGCGATCATGTCCTC 5643 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 5703 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTATGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15247-14256 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXC01000357.1 Pseudomonas aeruginosa strain VET-60 PA2_G4_NODE_73_length_21706_cov_20.9342_ID_145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15246 28 100.0 33 ............................ GCAGCACACTGGGTCGAAACCTCCAATACGTAT 15185 28 100.0 32 ............................ AACTGCCCGCCCAGCTTCAAGGCCAGCGTCGA 15125 28 100.0 32 ............................ GCGCTGAAGTCTAGACGAAGCCTCGCGTAGAC 15065 28 100.0 32 ............................ TCTGGATCTCGGATATCCGGGGCAATGGTCAC 15005 28 100.0 32 ............................ AGTACCTTGCAAAGGGCACGGCCTCTGCGGCT 14945 28 100.0 32 ............................ GTTTGCGATGAATAGCGCTCGCGAGTTGTTTG 14885 28 100.0 32 ............................ TCACGCCGAACTTCTTTGGATCCGCTACTATC 14825 28 100.0 32 ............................ TTTAGGACTTTGTCCTCAAGGAACTCCCTCCA 14765 28 100.0 33 ............................ CAGTTGCGAGACGGTGGCGACCAGGGTCAGGTC 14704 28 100.0 33 ............................ GACGGCATCAGCACGGCCAGCCCAGTGTTCCGA 14643 28 100.0 32 ............................ GTCCGGGACCTGGTCCTGAGACTGGTCGTCAA 14583 28 100.0 32 ............................ TGGATGCCCACTACCCGGCATCGACCGCGCTG 14523 28 100.0 32 ............................ TGGATATCGGTGTCCCGCGGTTCGATGAAGTC 14463 28 100.0 32 ............................ TACCCCCGGAAAAGCGCAACACCGACCAACTC 14403 28 100.0 32 ............................ TATGCGCTGAACCCTGGCGACGTGTTCTGCGT 14343 28 100.0 32 ............................ TGATAATGGCAAGTACGACGAAGTTGCTCGCA 14283 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCTCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //