Array 1 123789-126141 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905548.1 Paenibacillus ginsengihumi DSM 21568 F591DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 123789 32 100.0 35 ................................ CCGGTACGTCATGTTCCCCGGAACATGGTACACCC 123856 32 100.0 33 ................................ CTCCTCCCTTTTGCGCCGTATGACGTCGTGTAG 123921 32 100.0 34 ................................ CTCGACGGTCTGTTGCTTGCGGGGAATCTCCGCG 123987 32 100.0 34 ................................ CTTGTCGAGTTGCGACAGCTGGTTAGCCCCCCGC 124053 32 100.0 35 ................................ TACAAAAAAAACGCCCGATCAATGACCGAGCGTAT 124120 32 100.0 35 ................................ CCGCGTAACTGCCTCCCGCGGCCGGGTGCCGTCCG 124187 32 100.0 34 ................................ ACCCGCATCGTCCGGTCAATCCCGTCCCGGTAGC 124253 32 100.0 35 ................................ TCAACAGCGGCCAGAACCTGTCGCTTGCATTGCGT 124320 32 100.0 36 ................................ AATCGTTCAATACGTGGGTCCGGCTTATTATCAACC 124388 32 100.0 35 ................................ GTAGGAGCCCTCCGGGGCTCCGTGCTACCTATCGC 124455 32 100.0 35 ................................ AACCTAACCAATGCAACGAGCCTGACTGAGCCGTA 124522 32 100.0 35 ................................ CTCTAACGCATCCAAACCAAGTTGAAGCAAATGAT 124589 32 100.0 34 ................................ CGCGGCAGCAAACGGCCAATGTACGAACGAATCA 124655 32 100.0 35 ................................ CCCAAAAAGGCGTAAAAGATGATAGAATGTTGTCA 124722 32 100.0 36 ................................ CAATAAGATTGTATCTTAGAGCGCTCAAAAAATGTC 124790 32 100.0 34 ................................ CGTATGTTGTCAGTGGTGGTTATGTTACCAAGGA 124856 32 100.0 34 ................................ ATCAGGCGACAGGCCGGAGCTTAGAATGATGCTC 124922 32 100.0 33 ................................ ATCGGTGCCGCGGATACTTGTGGTTCGGGGGCC 124987 32 100.0 34 ................................ AGCATAGCGGCATCTTTGGCCGTGTCGATAAAGC 125053 32 100.0 34 ................................ ACCAATGTTTATGGGCTCAAACACCATTTTTGCT 125119 32 100.0 34 ................................ CGGTTTGACCCGGTACTCACCTGGCGCAAGCCTG 125185 32 100.0 33 ................................ GATAAACGGGAAGGGTCGATCATTTATACCGCG 125250 32 100.0 33 ................................ CGAAGTCGATGGACGTTGGGAAGGCGTTTGATA 125315 32 100.0 34 ................................ CGCATCCGGCTCCGGAAACTCGAACGTAAAGCCG 125381 32 100.0 34 ................................ TAACTTGTCGATAAATTCGCGGTACTTTGGTATA 125447 32 100.0 35 ................................ AATCGATTTCATTTGGGCCTCTTGCAAGTCCGCTG 125514 32 100.0 34 ................................ TCCACATTGCTGAACAACTCCAGGCATGGGCCAA 125580 32 100.0 34 ................................ TGGTGCTCTTTGTCGAGCATCCGGAAGATTTGGA 125646 32 100.0 33 ................................ GCCAATGAAGATTTTGACGACGTAGTCGACATC 125711 32 100.0 34 ................................ CGGCATGGTCCAGATCGACAGCAGTCTGATCCGC 125777 32 100.0 34 ................................ CGCTTGAACACGTCAAGTACGTTTATGACGGCAA 125843 32 100.0 36 ................................ TGACTATGCTCACTTGCCAGAGGATCACCCACACAG 125911 32 100.0 34 ................................ CTTTGCTTCTTCAAGGCTGTGCTTTAGTTCATGC 125977 32 100.0 34 ................................ AACTTCGTAAGAATCCGAGAAGCCTTGATATTGC 126043 32 100.0 35 ................................ CTATCGCGGCTGGAGAAGCTGCGGATCGCCCGCGA 126110 32 90.6 0 .........T..AC.................. | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.7 34 GTCGCTCCTCACGTAGGAGCGTGGATTGAAAC # Left flank : TGCAAGTAGCCGCTCTCGCCTGTCCCGATAGCACACATGCGGAGGAAGCGGGAACGTGCTAACTTGGCGTAGTGCCGCGGGCAAAACTTTGTGTGAGGGCTCCTTTTTTGCGGCAAAATGGCTGGAGGAAGCGTCCGAATCGCGCACCTTACCATCCCGAGCCTGCTGCCGGACTCTTTTTTTCTGCGGAGGAGACAGCAGCTGTGAAGGTTGAAAACGTCGAATGAAGGCCAATATGTTCCAAAATGGCGGTTTTGGTTGTATAATGGACGTAAGCCGATTCGGGCGATTTTTCCGTTACACGGCAGGGGCTGGTAAGGTGCGAATGGGAAGCTCCCATAAAAATCCCGGGTCTTTCGCACCTCGAAATTTGTCGAATACATGCGGTTTTGCATAGGTTCAGAAAAAGTCAAGAGCAAATTCATGCGCATTTAGCAACGGTTTTTTTGGAAAATGATTGAATTGATGCTAGAAGTGGATTGATTGTGTGTGTTTTTGCT # Right flank : CTTCGGCTGCCGTCAGGGTTGAAAACGTCGAATGAAGGTCAATATGTTTCAAAATGGCGGACTTGGTTGTATAATGGACGTAAGGCCGATTCGGCGATTTTTTTTCGTTACACGGTAAGGTTGGTAAGGTGCGAATGTGAAGCTCCCATAAAAATCCCGGGTCATTCGCACCTCGAAATTTGTCGGAAATCGTTGAAATTGTTGTTTGCTTGAAAAAGTCAATAGCAAATTGATGCGTATTTGGCAACGGTTTTCCAGAAAGTGTTTGAATTGATGCTGGAAGTGGATTGATTGTGTGTATTTTTGCTGTCGCTCCTCACATAGGAGCGTGGATTGAAACCACCCATTCGTTAACTTTATAAACGTCCTCATAGTCGCTCCTCACATAGGAGCGTGGATTGAAACCATATAGATGTCCGTCATCCCACCAGCATTCGATTGTCGCTCCTCACATAGGAGCGTGGATTGAAACCCCGCTTCACCCTTTCGACAAAATACTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 126449-128990 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905548.1 Paenibacillus ginsengihumi DSM 21568 F591DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 126449 32 100.0 33 ................................ CACCCATTCGTTAACTTTATAAACGTCCTCATA 126514 32 100.0 35 ................................ CATATAGATGTCCGTCATCCCACCAGCATTCGATT 126581 32 100.0 33 ................................ CCCGCTTCACCCTTTCGACAAAATACTCAAATG 126646 32 100.0 35 ................................ GTCATAATCCCAACCGCGGAGCCAGTACGTAAACC 126713 32 100.0 34 ................................ GAGGAATTTGCGAAACGTAACGTAATATTGACGT 126779 32 100.0 34 ................................ AAGCGGAGTGTCAACAATACTAATATCCGTAAGG 126845 32 100.0 33 ................................ GATATCGTCTTCGGTAGCCGGCTGGATGATAAA 126910 32 100.0 34 ................................ CCACGAGTAGCCCGTGAAGCACGACCCGGACCGT 126976 32 100.0 33 ................................ AAACTGGTGGTGGTATCTGGACGACAGAGGGTC 127041 32 100.0 34 ................................ CGATCGCGCCAACATCGTCCACTACGCCTGTAGT 127107 32 100.0 33 ................................ AATGCCACGCATGACGGGGGCTGCACCTATGAA 127172 32 100.0 34 ................................ TTGACGAACCGTTTACGTTGTTCAAACGAGTAGG 127238 32 100.0 34 ................................ ATCCATGCCATCGAGTGGGAGCTTTGCCCGTTTT 127304 32 100.0 35 ................................ CGCAAGAAGGCCGTTGCCTGCGCAGATCGTGCCGA 127371 32 100.0 35 ................................ TGCTTCCCTTGAACACTTATAGCATAGGGATACAT 127438 32 100.0 33 ................................ ACGGTAACTCGGGTGACGTTATTAGATTGTTCG 127503 32 100.0 34 ................................ TCTCGGCAGCAATACATCGACTTCCACGGAAAAG 127569 32 100.0 34 ................................ CAGAGGTAATTTTCTCCAGTTACCACCTGGTGGT 127635 32 100.0 34 ................................ ACAGTGGCGCTGCACCGCGGTCTGGGCCCTAACG 127701 32 100.0 37 ................................ ATCGTGGCGGATTTTTCGGCAATCGAAGGCAGGGTGG 127770 32 100.0 34 ................................ GAGCGCTTGGGCGACGACGTCAGCGAGAAGCACT 127836 32 100.0 34 ................................ CTCTCCAAAATACCCTTGCATCTCTTCAACCCAA 127902 32 100.0 34 ................................ TTGCCCGCGACGTCCAGCTCGACATCCCCGGTGT 127968 32 100.0 33 ................................ CATCCCGGTATAAAGCTCCCGGCCGTCGTTCCG 128033 32 100.0 33 ................................ GCCATACTGTCCGTGCGCACGGCAGCGGCGTGG 128098 32 100.0 34 ................................ CGCAATTTGTACATTTAGCCGCGACCACGACCGC 128164 32 100.0 33 ................................ GCCCCGGCTGGACAGCGTCAGTACCGAAGCCAT 128229 32 100.0 35 ................................ CCGGTCATCCAGACCAAAAAGGGGCCACTTAAATT 128296 32 100.0 33 ................................ CGATCAATCACGAACAGCGGATACTCGCATAGC 128361 32 100.0 35 ................................ AAAAAGTTTGCAAACGGCAAGTCATGGGATCAGCT 128428 32 100.0 35 ................................ TGGTAAACTTATACACGGGGGAGGTGATTAAATGG 128495 32 100.0 34 ................................ CTCCCTGGGAGCCCCGAAGGGCTCCGCGTTATTG 128561 32 100.0 34 ................................ AGAAAACTAGGACTTACTGATCCTGGACAGCGCC 128627 32 100.0 35 ................................ GTTGATAATATCCTCATACGACATAATAGCATTAA 128694 32 100.0 35 ................................ ACCGCAAGGTTGCTGCAGTGTTCACTGCCACCGGG 128761 32 100.0 36 ................................ CTTACATTACGACGTTGCTTGCTGAAAAAATGGGTG 128829 32 100.0 33 ................................ TTGAGGCTGGCGAAATGCTGGTTTTCGTGGCGG 128894 32 93.8 33 ..................T.A........... CCGGTGTATTTCCGGGCGTATTCGTTGTGATCC 128959 32 71.9 0 .....C....C.G..A....AC.C..A..C.. | ========== ====== ====== ====== ================================ ===================================== ================== 39 32 99.1 34 GTCGCTCCTCACATAGGAGCGTGGATTGAAAC # Left flank : TTCTTCAAGGCTGTGCTTTAGTTCATGCGTCGCTCCTCACGTAGGAGCGTGGATTGAAACAACTTCGTAAGAATCCGAGAAGCCTTGATATTGCGTCGCTCCTCACGTAGGAGCGTGGATTGAAACCTATCGCGGCTGGAGAAGCTGCGGATCGCCCGCGAGTCGCTCCTTACACAGGAGCGTGGATTGAAACTTCGGCTGCCGTCAGGGTTGAAAACGTCGAATGAAGGTCAATATGTTTCAAAATGGCGGACTTGGTTGTATAATGGACGTAAGGCCGATTCGGCGATTTTTTTTCGTTACACGGTAAGGTTGGTAAGGTGCGAATGTGAAGCTCCCATAAAAATCCCGGGTCATTCGCACCTCGAAATTTGTCGGAAATCGTTGAAATTGTTGTTTGCTTGAAAAAGTCAATAGCAAATTGATGCGTATTTGGCAACGGTTTTCCAGAAAGTGTTTGAATTGATGCTGGAAGTGGATTGATTGTGTGTATTTTTGCT # Right flank : CCACGGTCACCCATCGTCGTGGCTTTGTATCACTTTCCATGCAAAATTTAGCCTGTCGGCGTATTTGCCGGCAGGCTTATTTGTTTTTTATTCAACGATCCAAAACCCCTAATTTATCCCTCTTTTCCGACAATGAATCCGCTTGATGATGGAAAAATTAAAAAATTCCAAAAATTATGATAGATTTGGAAGGAATCCGCCAAACAGTGTCGAAATAGTACATCGATAGTCTCATGATCAATGGATATGCCAACGAGAAATCGGTCTGAAAGACCGGGATGCCCGGAGGTATTATGGACTACAAGGACTATATTGCTCACATCCGTGAAGCAGATGGGGAAATTCAGACGGCTGAAGAACATTTGCGGGAAGTGCGGAGGTTATGCGAGGAGTACGGGGGCAAAATCGGCCTGAGGCATCTGGCCGGACTGTCCGGGTGGCTGCATGACATGGGGAAATTGACCCAATCCTTCAAGTCATACATTGAAGAAGCAGTAGCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACATAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 137413-138846 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905548.1 Paenibacillus ginsengihumi DSM 21568 F591DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 137413 32 100.0 34 ................................ TTTTACACCACCAAGGACCCGAACATTTTGTCTG 137479 32 100.0 36 ................................ TGTTCGATAACTTTTGAGTCAATCTCCACCCCGTAT 137547 32 100.0 33 ................................ ATCGAGACAACCGTGACTTTCACGGTGTCACCA 137612 32 100.0 35 ................................ ATCTGTTTTTGATGAAAAGTGGATCGCCATCTTAG 137679 32 100.0 36 ................................ ATAATAAGCTGTTCGTCTGCAAAAAATAGGTATACG 137747 32 100.0 34 ................................ CGGTCGCGCCAACATCGTCCACTACGCCTGTGGT 137813 32 100.0 35 ................................ TCCGACTCCGGTCGATGACGTGTCCGACTGGGCCC 137880 32 100.0 35 ................................ AAAAACAGCGACGAAATCGATGGATCGGTTGTGAA 137947 32 100.0 35 ................................ GAACTAACGCAGCGACTGTACGTTTATCGCGATTA 138014 32 100.0 35 ................................ CGTTGTTGACGGCGGGTTTCGCGATTAGTTACCGG 138081 32 100.0 35 ................................ TCGGATATCCACTGCGCCGCAGCCACATACCCCTC 138148 32 100.0 34 ................................ GGTAGATTCAAAGAGCTATGATACGGCGAAGAAA 138214 32 100.0 37 ................................ CGTGTTAATCAGTCGGGTGGAATTGGAGGAACTGGTC 138283 32 100.0 35 ................................ AACATATGTCCCCCTTGTGCTCCCCCGCCCACTGC 138350 32 100.0 35 ................................ AGGTGTGTCGTTAGAGTGTATTGCGAGGGTGCTTC 138417 32 96.9 34 ...............................T ATCCACCCTTGTGAGGTGCAGAATGCAATAAGAC 138483 32 96.9 33 ...............................T GCTGGACGGTCGATGATTACATCAAGGCTGGCC 138548 32 96.9 35 ...............................T TTCGAACTCAAGGCGTCATCACAACGTTAACATCC 138615 32 96.9 35 ...............................T CAAAATTGAAGAGGCAGATAAGGAGGCTTATAAAG 138682 32 96.9 35 ...............................T AGTCCTGCAGCAACTCCCCGGTTGCCTTTTGCATC 138749 32 96.9 34 ...............................T AATCCATGGAAACCGGGTAGAGATGGCTGTGGAA 138815 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ===================================== ================== 22 32 99.0 35 GTCGCTCCTCATGTAGGAGCGTGGATTGAAAC # Left flank : AAGTAGGTGAGGATGTGCTGGTTTTGATCACTTACGATGTAAGCACGACGACTGCGAAAGGACGAAAAAGGCTCGCCCAAGTCGCCAAAACCTGTTTGAACTACGGCCAGCGCGTGCAAAATTCCGTCTTTGAGTGCATTGTTGACACAGCGCAGTTCAGAAGGTTAAAGTATGATTTGGAAGCATTGATCGATAAGGACACCGATAGCTTGCGCTTCTACAATCTCGGCGAGAAGTACAAGACCAAGGTCGAGCATATAGGCGCGAAAAGCTCCTACGACATGGAAGGGCCATTGATCTTGTGAAGCGGAAAGGCAAGGTGCGAATGCGAAGCTCCCATGAAAATCCCGCCTCTTTCGCACCTCGAACTTTGTCGAAAATTGTCGAAACAATTGCTTGCTTGAAAAAGTCAACAGCAAATCGATGCCTATTTCGCAACAATTTTTCCGGAAAATGATTGAATTGATGCCGGAAGTGGAATGCTTGTGCACATTTTTGCT # Right flank : TCTCCTTGATCCTTTTTCTCGATGACGAATGGACCTCTGTCAATAGATTGGACACATAAAATCGAGAGAATCACGCAGCCGGATGAAACATACGTTCGTATTGATTTGGAGTGAAATACCCTATAGAGGAGTGGATTCTTTTTCCATTATAGAAGCATGTGATGTACTCAAAAATCTTCTCCTTGGCTTCTTTCCTCGTTTTGAATTTATTCAAATAGACGAGCTCTTTTTTCAGCACACTATGAAACGACTCAATACAAGCGTTGTCGTAGCAATTTCCCTTGCGGCGCATGCTGCCGGTCATTCCATATTGTTTCAAGCGTTGCTGATAGTCTGAGGATGCGTACTGGCTGCCGCGATCAGAATGATGCAGCACGTTCCCTTTGGGCTTCTGAAGGCGATACGCCTGATCCAGGGCCTTCAAACAAAGCTCCTTCGTCATTCGTTCGTCCATATGGAAGCCGACGATTTTGCGCGTGCAGAGGTCCTCCAAGCTGGAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 140152-140449 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905548.1 Paenibacillus ginsengihumi DSM 21568 F591DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 140152 32 100.0 34 ................................ ATAGAGCTGACAATGAGGATTCTGGGTCACGACC 140218 32 100.0 34 ................................ ATCGGATCGCCGTAATTTGTAACAAAAATGTGAT 140284 32 100.0 36 ................................ ACAAATATGCATGCTGTCACTCAACCGGGAAGCGGC 140352 32 96.9 34 ...............................C CAACTGGTCATTTGCTCGCCCCAAGCTCGGATTG 140418 32 87.5 0 ...........C.C...............T.C | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.9 35 GTCGCTCCTCATGTAGGAGCGTGGATTGAAAT # Left flank : CGACGTTTGCTGCGATTGCTTTCCTTGCGTTTCGTCCATTCGTAATAACCGCTTTTGGAAACGCCGAACAGGGAGCACATCTTCGCGACACGGAACTGCAAGCGGTGTCTGTGGATGAATGGATAAATCAGCGCCGGTCTTTTGCGAAGTAGTGCATGGCCTTTTTTAGAATTTCGTTCTCCTCTTCCAGATCGCGAATTCGCTTCTGAAGGTCACGTAGCGCTTTATCCTCCGGCTTAAGCTGTCCGCTTCCGGGGAAGGCTTGAGTTCCGCTACTCTTGAATTCGGCGATCCAGCGGTACAACGTGTTCTCATGCAGCCCCATTTCTCGGGCTACCTGCGCCACCGTTTTCCCTTCTTCTTGGATGAGTCTTACGGTTTGAAGTTTGAATTCCTTGTCGTACTTTTTCGTCATTTCGGACACCTCGATTATGAATGCTTTTATTGTCGCACTCTCGGTTCTCCGTGTCCAATTTAAAGTCTAGCATCAGAAAGACAAT # Right flank : CTCGCCGCTGCCTTGTTATAGAAAGCAGCCCTCTGCTTTAACGTTTAAAAAAGACGAAAAAAGAAGGCAGCGCACGCGCCGCCTTCCCTTCTCCGAGACGATTAAAGCTTCTGAACGATATTTTCGCCAAACAAACATCAGCTTAGCACCTTCGCCATAAACGCGTAGATCTCTTCATCGGTGATGTTCTCACTATCGGGCGAAACGATTTGCTGGACCTGCAGGCCGCTTTTAAAAATGGCAAGAAACCGGGCGGCTTTCTCCGCCTGAAGGTGCGGGGGAATGACCCCGTGCTGCTGCCCGACCTCGATCCATTGGGCTGCGCTTCGGATCGCCGATTCCTGGTACCGTTTCAGGATGTCGGCAACGCCGGGCTTGTCCTTTTGACTGAGTAAATAAATAAAAATAAGATTGGCCGCATTGGCGGTGCTCGAGAGATGCATCAAACGGCCGGACAAGGCGCTTAACGGGCCTTGAATGCTTGCGGCGGTGGCGGCTGC # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCATGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17427-16484 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905604.1 Paenibacillus ginsengihumi DSM 21568 F591DRAFT_scaffold00057.57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17426 28 100.0 33 ............................ CATCCGACCTTCATCTGCGCGGAAACCGTAACG 17365 28 100.0 33 ............................ CAACTTCACTGTCCGGGGATGTCGAGCTATATA 17304 28 100.0 33 ............................ GGAATCATCGTTGTAACGCTCCACGAAGATTTA 17243 28 100.0 33 ............................ GACAGTTCGCCGTTATGGCTGCCCCCATTGGAG 17182 28 100.0 33 ............................ TATGGGGTCAAAAATGAGAAATAATATGTTGTT 17121 28 100.0 33 ............................ TATACGAGGAGGATTATAATAATGGCAAACGTA 17060 28 100.0 33 ............................ TTGAATCTCAACTTCAATCCGAAGATGATAAAG 16999 28 100.0 33 ............................ TAGATCCAAGAGGAGAAGGGCCTGACAGTTTAT 16938 28 100.0 33 ............................ TAGTTGGTGTTGCACCTATTGGTTTTTGTTTTA 16877 28 100.0 33 ............................ GAGAACCCCGTCCTCAATAGTAGAGATGTCAAA 16816 28 100.0 33 ............................ TCTGATGTCGCCCGTTTACCAACCCGCGCGCGG 16755 28 100.0 33 ............................ TTTAATACAATATTGCCGTATTTCGTGGTATAA 16694 28 100.0 33 ............................ GCCAACCCTGTACCCGTGCCGGAGTAATGGCCG 16633 28 100.0 33 ............................ CGATTGGCAAGCCGATACATCGCGATTGACTAC 16572 28 100.0 33 ............................ TATCCTGTTAGTAGGCGTTCTGTCTATTTCGGG 16511 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 ATGTTCCCCGCGTGTGCGGGGGTGATCC # Left flank : GAACGCGATGAAATGATGGAGATTGGTGCGGTGAAAGTGCGGGAGCGGCAGGTGGAAGCGACTTTTCAAGCCTTGTTGAAGATTAATGGCAGGATATCGCCCTCTGCATCGAAATTAACCGGATTAACGGAAGAGATGCTACAGGCTGAGGGGAGACGGTTGGAGGAAGTATTGCCCGAATTCCTTGCTTTTATCGGAGATTTGCCGGTGATAGCGCATCATGGCTATTTCGACTACGCTTTTATCCGGGCGGCGTGCGCAAAATACGGTTTTCCGCTTATTACCAATCAACGGACGGATACGAACTCGCTGGCCAAACGCTGCATTGATAAGTTGGCAAATTACAGGCTGGATACGTTGGTTGACTATTTTCAGATCCCGGTTAAACGGCTGCACCGCAGTTTGGATGACTGTTTTGCCACAATGCAACTTTATCAGAAACTCAATGAAATCAGGGAGCAAGAGTTATAAAAAGCGGATGATTACGGGATTTTTTTAGT # Right flank : CGCCTCGCTGCAATCGCGTACGCCGATATCGTCATGTTCCCCGCGTATGCGGTTTGCGTACGAGTGATTTTGCAGAGAGAATGTATGGCGGCGACCAATGGGGCGTCTCTCCTTGATGGCGTTACATGCGCGAGCTCTGGCCCGCGGTCGCAAGCACGGCTGTCTGGAACGAATATCGCATACTTTGGTCCTCGCGCTGCTGTGCGTTCATCGGCAGGTCAAGTGGAGAATGGCGGCCATTCCGCTTCTACTAAGCCTCGACGAGTGGATGGCAGAACAAGACCTGATCCCGAGGACCAGGTCTGCTTTAATGGCTTGCGAGGCTGCAGCGGCGTTGGCTTAATGGAATTGAACGTCGATGCGTTTTCTTGTATCTCCCTGCTGCTTCGGCATGCGGATTTCCAGCACGCCGTTCCGGTACGTCGCTTTGATGCCCTCAGGCGATACGTCGTGCGGCAGGGTAACGGACCGGTGAAAACGGCCGGCAAAACGCTCCTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGTGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1726-2297 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905617.1 Paenibacillus ginsengihumi DSM 21568 F591DRAFT_scaffold00070.70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1726 33 100.0 35 ................................. CAGCAATGCTATTATCTTGGCAAGGCCATCCGAAA 1794 33 100.0 36 ................................. CATGCCAGTACAAATCATCATCAACGGCGAGAACGC 1863 33 100.0 34 ................................. ACCAGGGAGCCGGCGGCGTCCGACGGGAACCGGC 1930 33 100.0 33 ................................. AATAATCTCGGGGTGGATTATTTTTTGTTGTGG 1996 33 100.0 34 ................................. TCCTTCGGAAGCGTTATTTTATCGTACTGGTCAT 2063 33 100.0 34 ................................. AGCTTATCCCAAGTAGGACCAAGTGCCGAATCTT 2130 33 100.0 34 ................................. CGCTGAACCCCCTTGAAATTGCGCAACGGCAAGC 2197 33 100.0 35 ................................. CCCCCAATGCCTCAGGAGGTGCTCCAAATGCCGCG 2265 33 97.0 0 ..................G.............. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 99.7 34 GTCGCATCCCGTACGGGGTGCGTGGATTGAAAC # Left flank : AATTTAGCGCCTTTTACGCCGCTGCTTGAAGCGGGAGCGCTGCTGCATGCCGGAAAAAATTCGACCATCGGGTTCGGGCATTTCAGCGTGACTTATGATCGATAATGACGAGGGGGCGCCAATAGATACCGGTGCCGGCCCGCTTTCTAGGCCGCCCACATCCAGCCCGGGGTTCCGGGCTTTGTTTTTAATCTATTTGTTGTCATCAGGTTTGCATATTTTCAGCCCTTTGCCTTGCTTATTGTCAATGCCCTCATTTAATCTTCCCCCTCCTGTAAAATAATCTTCCGATCTTCATGTCATCCTTATATACACCTTCAAGAATGCTCAGGTGCGAATGCCAAGCTCCCATGATTTTCCCGGGAGATTCGCACCTCTTGATTTTACTGGGTTTTTGGCATTTTATCGTGAATTTGGCTTTGTTTTTTTAGTATAATAAAAGGGCATTCGCACTAAAGGGCTTTCAAACCCTTGCCGCTCAAGGGCACTCAAGCGATGCT # Right flank : CGCCATCAGGGTCGGCCAAATGATTGTGCCGCTACTCGGCTCTCAACGAGTCCACAATCAACTGCACGTAGCGCTCTAGCATGTCGATGTCCTCGCAGCCAGGCTCGGGAACGACCTTTTTTCGAGTGGCGAGGCGCTGCATCAGCCCCAGCATCGTTTGCGTTACCGTCTCGGCAAGCAGTTCCGGGTCGGAGTCGGCGCGCAGGGAGCCGTCCCGAATTCCTTCGACGATAGTATGGACGGACGATTTTTTTAAATTCGAGATAAATTGGCTGTATTTGAGCTGCAGCTCCGGCGACGGGTAGTCAGAACTGTACGCATGGTCGAATATTGCCGTGAAGCGGATATAATCCTTATTTTCCTTGAAAAAATCGAGATAGTTCTGCAGGTATTGCCGCAGCTTGTCCGCCCCGCTTTGGCCTGGCTCCATGCGCTGCACACGACTTTCGCTTAATTTGGTCAAAATGCTGATTTGAATATCAAAAATGATGTCGTGAATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTACGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14226-15209 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905621.1 Paenibacillus ginsengihumi DSM 21568 F591DRAFT_scaffold00074.74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================================================================================================================================================================================================================== ================== 14226 33 84.8 32 ....T...T...........T.GA......... CTCGCCGAGGAAACCAAGCCAAATTGCGACTC 14291 31 84.8 243 .......T......A...G..--.......... CTGTAGCGATGAGACCCGGAGGGTTAGCCCGGAGTCGATCATGAATTCATCATGCCAAACGTAATTCAAGATCAAGTGCGAATGCCAAGCTCCCATGATTTTCCCGGGGGATTCGCACCCCTTGATTTTACCGGGTTTTCGGCATTTTAGCGTGAATTTTGCCCGGTTATCGAGTATAATAAAAGGACATTCGCACTAAAGGGCTTTCAAACCCTTGCTTCTCAAGGGCTCTTGGGCTGTGCT 14565 33 100.0 37 ................................. AAACGTTCGCCAAACCTTTCGCGATAACCGTACGAAA 14635 33 100.0 33 ................................. CAGCCTGTTGCTGACTATTTTCGGAACCTTGGT 14701 33 100.0 36 ................................. TTGGCGAGGTCGGTTGCGGGGGCGGTTTCTTTATAA 14770 33 100.0 35 ................................. CCCGCCTACCCGGCCAACGAGGTCAGCGTGCGCAG 14838 33 100.0 34 ................................. CGGATACGTACCGTCAATCAGCGCGCCAGTCGTT 14905 33 100.0 35 ................................. CCGCAGCGGCTACCGACGTAATCGGGTGCCGTTGG 14973 33 97.0 35 .............C................... CTACGATCATACGCGTAAGTATGACGCAAAGCACG 15041 33 93.9 35 .............C....G.............. GTCTTATACTCGGGAGCCGCCGTGACGGCCGATAC 15109 33 93.9 35 .............C....G.............. CCAACCGACCGGGGCGTAAAAGTTGTCGGCCAGAT 15177 33 93.9 0 .............C.............C..... | ========== ====== ====== ====== ================================= =================================================================================================================================================================================================================================================== ================== 12 33 95.7 54 GTCGCATCCCGTATGGGGTGCGTGGATTGAAAC # Left flank : TGCCGAACGGATCGGGCATGTGCCCAAGTTTTGTGCGGACATTGAGCGCGGCCAAGCGGGGATGTCCATTGATACTATGCTGGGCATCTGTTCGGTGTTAAAGTTTTCTCCGAATGAGTTGCTTTTTGCCAGTACGGATGAAGCCGGGTCGGATGAAAGCAAGCTCATCGCAGCTGCATTGAATCAATGCAAGGTGCAGCAGCGCAAGGATGCATATGCCCTCCTGAAACTATTTCTTACGGCGATTCGCTAATGCTTCTCCCTGCTTCCCCTTAAAAAAGATACCGATCCCGCATCTCGATGGCACAGTCCAATTGCAGGGGATCTTTCGGTGCGAGTCCTAAGCTCCCATGATTTTCCCGGGAGACTCGCATCCCTTGATCTTGCTGGGGCTTTCGGCGTTTTAGCGTGAATTTTGCATGGTTATCGATTATAATAAAAAGGCATTTGCCCTAAAGGGATTTCGGGCCTTTGTCTCTCCAGGGCTTTTGAATTGTGCG # Right flank : CATCCAATCGCTCATGGATGACTATGTATCGGCGAATCACATCCCATACGTATCGCGTGTTTAGCACATCTGCCCCATATCCGGCATCCCCATAAAAATGAAAAAAGCACTCTACTCCGAAAAGTAGAATGCCTTCGTGATTTAACTCTGCATCCCTGTATATCTATATCCCCATATAATGGAAGTTCCGTGTTATCGACTTCGCTCCGTTGGAGGTCGCCGCCGCCAGACCTCTTTCTAGCCTTCTAGCGCATCCGTAAGCCGCATTTCAACCCCGGGCCTAGCCCAACTTATGCCCACAATTCGGGCAAAAATTCGCCCCTTCGTTTTTCGTGCCGCAATTCGGGCAGAAGTTCGGTTTGCTTCCGGAGGAGGCAGGCGCCGGCTCGGACTTGTCCTGTTGCGCCGGGTTGGCCTGGCTGCGGTTCATATTTTTCATCATTTCGTTCGCCAGGTTCATGCCCATCATCATGCCGGCCATATCCGAAGCGGCGCCGCCG # Questionable array : NO Score: 6.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-1.94, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTATGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19595-21191 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905621.1 Paenibacillus ginsengihumi DSM 21568 F591DRAFT_scaffold00074.74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 19595 33 100.0 35 ................................. GCTTTCGTCATTCGGCCCCGTCCTCCTTTTTCTTT 19663 33 100.0 37 ................................. CTTCAGACGTAAACTCGATATCATTAATATTAATTGA 19733 33 100.0 36 ................................. AAAGTAGTCGTGCAGCAGCAAGTCAATCGCGGTCAA 19802 33 100.0 35 ................................. CAAAAACTCACTGATTGCACTTAATTTTTACAGGT 19870 33 100.0 35 ................................. GATCAAGAGCGCTACAACGAGCGTGCAGCCGTTGC 19938 33 100.0 33 ................................. AGCCATGCGGGAAAGCGCACTGGCACGGCAGAC 20004 33 100.0 33 ................................. AGTTTAAAGATCTTGATAAGCTCACTCCAGAAC 20070 33 100.0 35 ................................. TGGCTGGCGCTGTGCGCCTGCTGGCTGGCTGCTGC 20138 33 100.0 35 ................................. TCAAACGTGGTGTCTTTTTCTTCGATGTACGTCCC 20206 33 100.0 35 ................................. GACGTCGATGCGCTCAAGGTACGCACCCTCGTCAC 20274 33 100.0 35 ................................. GGGTATGCCGTATATCTTGACATACCAGTGCGGGT 20342 33 100.0 34 ................................. CGATCATCCTCTCAACTTGTTAACCTTATTGTAC 20409 33 100.0 37 ................................. ACCTCGGATGACTACGTAACAGAGTTGGCGGCACGGC 20479 33 100.0 37 ................................. AGACAAACCGGAGGACAACGCAGCCAGATCGCGGCTG 20549 33 100.0 37 ................................. CAATAGTGCGGGTCTCCAGAAATTTTTTCGGGAGGTG 20619 33 100.0 34 ................................. TTCGACCCACGCCTCCGCCGCGGGGTGGTTTGCC 20686 33 100.0 34 ................................. GTTGATACGGCGACGTGGGGGTTGGCGAATTGGG 20753 33 97.0 35 ........................A........ TCGTCGATATACGTCCAATATCCCGGCCAGACCTC 20821 33 97.0 33 ........................A........ GCCGACGAAGGCGAGCACCGGCGGCAAATATGT 20887 33 100.0 36 ................................. GCCGGCTTTTCGGGCGCGAGCGGCCTCCTCGATCGT 20956 33 97.0 34 ...........G..................... GCTTGCCTTGACAGATTCATGAACCATAACATTG 21023 33 97.0 35 ...........G..................... GCGCCACAGCCGAACATATGATCAAAATCCCGCGT 21091 33 93.9 35 ...........G.....A............... GCTATGGTTTGAATGATGCTAGGAGCCATCAACGT 21159 33 81.8 0 ...........A.C...AA............CG | ========== ====== ====== ====== ================================= ===================================== ================== 24 33 98.5 35 GTCGCATCCCGTATGGGGTGCGTGGATTGAAAC # Left flank : ATTTGTTCAAAGTTATCTGAGCCGATGGATCGATTTATTGCACTGAGCAATGGAGTGAAGGGGGAAATCCCGTTGTGGCTGTGGTGCGTGTAGTTTAAGGTTTTGAGCGGTGGCATCCATCGGGGCTTATGCTCTGTTGGTCGAGGATATTCCAATTGACGACCAAATACTTACTGTGATTCATAATTCTGTCAAGATCGTATTATTCGTTTATGATGCATATTTATTATTTTCCAGCGTGAGTCAGATGGTGGAACCCGTGTTGCCAGTCTGATATCATCAAACAAGCCTGCTCCATGGGGGCTAACAATCCGCCGCAAGCAATGCCCCAGGTGCGAATGCCAAGCTCCCATGATTTTCCCGGGGGATTCGCACCTCTTGATTTTACTGGGTTTTTGCCATTTCAGCGTGAATTTGGCTCTGTTTTTTTGTATAATAAAAGGACATTCGCACTAAAAGGCTTCCAAAGCCTTGCCGCTCAAGGACTGTGCGACTGTACT # Right flank : GGGTGGCGCGAGATGGCCGGCACGCCTGCTACGATTCGCACTCCTACAGGGCGCGATCGTGATCAGGCGTTCACACGTTTTACAAGCCATTCTTTCATGAGCTACTAAACATCTCCCCTTCTTATCAGTCTCCTTCCCCTGTTTTTCTAATCATTCAAAGGAACTATTTTTTTGGCGAAAGCAGTCCTTTTTTGTAAACATTTGTGGTGAAACCTTGTTAAAATTTAACTTTCAATGCTTCCTGTGTAGGTCGAAAGACGGGTTTATAAGATGTTTTCTCATCTGGATACTGTGACATTTCGAGCCTCTTCTGTCGCCCAACAAGAAGGCAGATTGCCTCCGTACCTGGGCTCGATGTTGAGAGAACTCATCGGGCATTGCTTGCATGCGGGACTTCGTATGCCCTACGCCTCATGCGTAAGTGTCGTCGATGCGATATCAGGCATCATTGCGGCTATACCCAGATGTTCTGCTCCCCGGCAACGAAGCCGGAGCGGTCA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTATGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //