Array 1 1336389-1333803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018614.1 Lactobacillus delbrueckii subsp. indicus strain JCM 15610 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 1336388 28 100.0 33 ............................ CAGGTAGCACGACACCATAGAGAGCCGCTGGGT 1336327 28 100.0 33 ............................ TGTCCATTGACCGCTTAGCTTTAAGCTCTTCGA 1336266 28 100.0 33 ............................ TTTAGATCGGTCAAGGGCCGGCCAATTTTAGGG 1336205 28 100.0 33 ............................ TCAAAGGAAGGGGGGAAAATAAAAATGGATGTT 1336144 28 100.0 33 ............................ AAGCACGATCGACAGCACGATCGACAGCACGAT 1336083 28 100.0 33 ............................ TATCAAGCAAGCTTTGCCAATTTTAAGACTGTT 1336022 28 100.0 33 ............................ TAATTGTATGTATTGTCGTACTTGTCCTCTAAG 1335961 28 100.0 33 ............................ CGGGTTAATTCGCCGGAAATCCTGTATGGCGAA 1335900 28 100.0 33 ............................ TTTATAAGCAAGTTTATTTATTTGCTTTAAGGG 1335839 28 100.0 33 ............................ TTTTAACATTTTTGTTTACCTCTTTTTATCTAA 1335778 28 100.0 33 ............................ TTAGAATGCAATTCGGGCGTCCTATTCTTGCTA 1335717 28 100.0 33 ............................ TTACAGTCCATTTATTGTAGATTGAATCTACAG 1335656 28 100.0 33 ............................ TCAACCCTATACGATCCAAGAGGAACATTTTTT 1335595 28 100.0 33 ............................ TACCATCTACATCAGTTGCATCCATGATTGTTT 1335534 28 100.0 33 ............................ TCCATAAAGCCGCTAAAAAAATGTTCCTCTTGG 1335473 28 100.0 33 ............................ TCCTTGCCCGTAAGTATGTATGCGCAAAGGAAG 1335412 28 100.0 33 ............................ TTCGCCATACAGGATTTCATCTGAGCTTTCACA 1335351 28 100.0 33 ............................ TTAATATGGTGGACAACTACAAGGATTATAACG 1335290 28 100.0 33 ............................ TCACCTCTACACTCACGCCTACCACTTTGCACG 1335229 28 100.0 33 ............................ CTAAGCAAGAGGCGCCAAAGTAGTTGCCGTTTT 1335168 28 100.0 33 ............................ CGGTTTATGGCAGCTATGTTGCCGAAATTGGCG 1335107 28 100.0 33 ............................ TTGTCCTTGGCAAAGAGGGTCTTTGGTCGCAGG 1335046 28 100.0 33 ............................ CTACCTGTTTACCGTTTCTTTCATAGGTCAGTT 1334985 28 100.0 33 ............................ CCATGACGGTCAAAGAGTGGCGGGAAAATTATA 1334924 28 100.0 33 ............................ CCCGTCCCCGTGAGCTAAATGAATTATTACAGA 1334863 28 100.0 33 ............................ CGGGATTGACCGTCGGGTTGCTCAACTTGACGG 1334802 28 100.0 33 ............................ TCTTGCTGAACAGCCGGGAGATGTTGATAAAAG 1334741 28 100.0 33 ............................ TCAACAGTCCGCTGGGCGTGTGAAGGAAACTTT 1334680 28 100.0 33 ............................ TTGCATCCGATGCTAATGCTTGCCATCACGTCA 1334619 28 100.0 33 ............................ TGAGCGCCCCGCTGCTACATAGCGAATAGTTTC 1334558 28 100.0 33 ............................ TTGCATCCGATGCTAATGCTTGCCATCACGTCA 1334497 28 100.0 33 ............................ TGAGCGCCCCGCTGCTACATAGCGAATAGTTTC 1334436 28 100.0 33 ............................ TTATCAGTCTGTGGTCAATGAAAATAGGGAACT 1334375 28 100.0 33 ............................ CTGAGAGGTTTCGTTGACGCTGCAGCTTACAAG 1334314 28 100.0 33 ............................ TCCCACATCCCCGGCCTGGGGGAGCGGGCGCTA 1334253 28 92.9 33 ...G................A....... CAATGGTTAAGAGTGAGAGAAAAATGACTACCG 1334192 28 100.0 33 ............................ TCCAGCTCATACAAGCCAGTGGTTAGCTCAATG 1334131 28 100.0 33 ............................ TACGGCAGCCAAAGAAGTTTTGAAGGAAAACGG 1334070 28 100.0 33 ............................ CTCCATTCGTCGATGAAAAGGGCGGCTTCCATT 1334009 28 89.3 150 ..........A.T.G............. TGGGGGGCGTAGTACACCCCACTGTTATAGATCTATTTTACTTAATCGGCTGTGATCTCATTGCTATTAGTGAGTAACATGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 1333831 28 78.6 0 ...........AT.T.C....A.....A | T [1333824] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 41 28 99.0 36 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGAGGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAAAGGTAATAGAGAAGGAGTGAGGAACAAACATGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAATATAGCGCAAAACACGGGCAAAAGCTATATGAGCATCTGGAAGGTCGCGTCAAAGGCGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGCCTGCCGCTGATGCCAGAGTCTGCATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCACGGCAATAAGCCTGGCACCT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //