Array 1 214623-215793 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NXCL01000006.1 Moraxella catarrhalis strain 5550565E 5550565E_contig_6, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
    214623	    28	 100.0	    32	............................	ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 	
    214683	    28	 100.0	    32	............................	TTGATGTACTAAAGTCGTGTTAATAACATAAT 	
    214743	    28	 100.0	    32	............................	CTGCCACCTCACACAGTGGCAGAGTTTACCCA 	
    214803	    28	 100.0	    32	............................	AAGCATTAATAAAATTCCAAGCATTGAAAGTG 	
    214863	    28	 100.0	    32	............................	GATGTCGTGCCAGATACCCAGTCTATCCAGGC 	
    214923	    28	 100.0	    33	............................	TTACACTTGTAATCGTCGAAATGCTTCTTGTGT	
    214984	    28	 100.0	    32	............................	ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 	
    215044	    28	 100.0	    32	............................	TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 	
    215104	    28	 100.0	    32	............................	ACAATACCGCAGAAGGCATTTCTTTTGATAAA 	
    215164	    28	 100.0	    32	............................	TACCTGAAATCAGACACGATCAAATTAAATTA 	
    215224	    28	 100.0	    32	............................	CCAAAGACACCACACATCAGCTACTGCAAACC 	
    215284	    28	 100.0	    32	............................	ATAACAGCAACAGGTACAACCGCCGATAAGAT 	
    215344	    28	 100.0	    32	............................	TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 	
    215404	    28	 100.0	    32	............................	GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 	
    215464	    28	 100.0	    32	............................	TTGATTAGTTGAGTTTATATTTGCCCAATTGG 	
    215524	    28	 100.0	    33	............................	ATTCATCTCATCAGCCATCATTTCGCATTCAGG	
    215585	    28	 100.0	    32	............................	GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 	
    215645	    28	 100.0	    33	............................	AACCGCTTTAAATGCAACAGATAAGGCATCTGT	
    215706	    28	  96.4	    32	...................A........	TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 	
    215766	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
        20	    28	  99.8	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                 	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.40,-7.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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