Array 1 22912-24134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAKY010000021.1 Neisseria meningitidis strain 107072 NODE_21_length_40895_cov_39.902217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22912 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 22978 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 23044 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 23110 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 23176 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 23242 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23308 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23374 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23440 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23506 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23572 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23638 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23704 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23769 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23835 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23901 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23967 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 24033 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 24099 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //