Array 1 640499-641906 **** Predicted by CRISPRDetect 2.4 *** >NZ_LASM01000003.1 Vibrio parahaemolyticus strain 10-4243 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 640499 28 100.0 32 ............................ GAAAGCTGATTGCTACAGTTACTTATACTGAT 640559 28 100.0 32 ............................ GATTGAATACGGTGAATACGAACGCGTTGGTG 640619 28 100.0 32 ............................ AACAGGCTGGCCGCTTCACGGTTAACTTGCTT 640679 28 100.0 32 ............................ AAAGTACCTAGATGGGTAAAGCGCTGCTGATA 640739 28 100.0 32 ............................ ATTTCTATTTTTAACCGGGACTATTTCAAACG 640799 28 100.0 32 ............................ ATAGCCAGAGGCGAAGTAACCTTGCGCGTCAC 640859 28 100.0 32 ............................ TACACCCCGCCAAGCTTCAATAACGCAGCCAA 640919 28 100.0 32 ............................ GTTGGACGTGGACATGTTCAAGCTCAGTCGGA 640979 28 100.0 32 ............................ AATCGAGTGCGCAACAGGTGGCTTTTTATTAA 641039 28 100.0 32 ............................ TTATCAACAGACAAAACCAGCACCAAGCACGC 641099 28 100.0 32 ............................ CGACATCCTAGAGCGCGATTGTGGTTTACAGC 641159 28 100.0 32 ............................ AAACGGTTTACGTCCGAGTCAAAACCACCACA 641219 28 100.0 32 ............................ TTGGAGGGTAAAGGCTGCATCGAACTGCTAAG 641279 28 100.0 32 ............................ TTTCGCCAAAATTTTCCGTAACTTAACTGCAC 641339 28 100.0 32 ............................ CATAATAAACGATAGGGAACAAAGAAATAATG 641399 28 100.0 32 ............................ ATAAAACGCTCCCAGTTATCCCATAATAAACG 641459 28 100.0 32 ............................ ACCATATTGGCTTGAGTTAGATTGTTGTCTTT 641519 28 100.0 32 ............................ TTTGCTCAGTTTCAAGCTGATACTGATACACT 641579 28 100.0 32 ............................ ACAGTAAAAGCATTAGTTTGTAGTAGGCTGGC 641639 28 100.0 32 ............................ GAAGTAGAAAAACTAACTACATCAAACAAAAC 641699 28 100.0 32 ............................ ATCCTTCCATATCTCCTGTGCACGCTTACTCA 641759 28 100.0 32 ............................ CTGACAAGTGCAGGGCTAGAAAGTTTCTAGGT 641819 28 100.0 32 ............................ ACACTCCGAAACGTTTTGCGGAATGGCTCAAA 641879 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.9 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAACTGGAAAAGACTAAGCCTACCTCGCTCTGTTTATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCGCCTGATAAGAGCAGTAGATTTCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCATTTCGATTGTTATGGACTGAATGCCAAACTCAATCAACAAGACGGTCTTGGGACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGTTATAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTGAAATTTATATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCCTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTATGAAAATCCATAATTATAATTGTTCATATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATCGCTTGGAAGTAATCGGTGAATAATACATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCAATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //