Array 1 4237395-4229505 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJMWK010000001.1 Mycobacterium riyadhense isolate MR-206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 4237394 36 100.0 36 .................................... GGGTAACGGCCCCGATCTTCGTCTGGCGTGAGCACG 4237322 36 100.0 35 .................................... GGCGCTTGAGCTGCTGAAATGATGGGTCCTACCGC 4237251 36 100.0 35 .................................... ATCACCAGCGCCGCCGCAGACTTGGCGCGCATCGG 4237180 36 100.0 38 .................................... GAGCGGCATCTGGCACACACCTATTGGGACGAATGCCG 4237106 36 100.0 36 .................................... CCTTAGATGGGGTTGTGCTGGCGTTGATGACCGCAG 4237034 36 100.0 36 .................................... CAGTCATTCTTCGGCATCGTCCCACCACAAGGCCCC 4236962 36 100.0 36 .................................... GGCATGCTCATCCACCCCTGTGTCCAGGGCGTTGAT 4236890 36 100.0 36 .................................... TGCAGCGACATCATCGCTATGTGTTGTGCTGGCCAT 4236818 36 100.0 36 .................................... TAGCGCTGATGGCCGCGGCTTCCGCCCAGCAACCAT 4236746 36 100.0 35 .................................... GTCAACCCGGTCACGATTCCGGTCGGCATCCCCGA 4236675 36 100.0 37 .................................... AGCGACGACGACAACCCGTTCGCGGCCGGATAGCCTC 4236602 36 100.0 36 .................................... GGATGTGCCGGGGAGTCTTCGGTGTTCATTGCGTTG 4236530 36 100.0 36 .................................... CGAGTATCGCGTTCTCATGCTCCAATTCCTGTACAG 4236458 36 100.0 36 .................................... CATCACACCGCGTGCAGCGGCCATCGCCTGATCCGG 4236386 36 100.0 37 .................................... CAAACCTGCTGGTCAGAACCGGCTGCAACCTGCGAAT 4236313 36 100.0 35 .................................... CATGACCGGTCGTCGTTGCGTCCCAAGGCAACTGC 4236242 36 100.0 36 .................................... CCGTTCAAGAAGAACATCTCCGCGCAGGCCGTTCTT 4236170 36 100.0 36 .................................... TCCAATACAACATGACACCGCCGTCACCGCATGTCG 4236098 36 100.0 36 .................................... GGCGTGTACATTGTCGCGCATGAGGCCGGGGTGCCG 4236026 36 100.0 37 .................................... ATGACCGGGCGACCGCAGATAATGAGCCAGCGCCGGA 4235953 36 100.0 35 .................................... CCCAAAGGGGGTGTCGGACTCGTTATCAAACCATT 4235882 36 100.0 35 .................................... GGGCAAGGTGACTTTTGCATTCAACAAGACCGCGA 4235811 36 100.0 36 .................................... AGAGACTTCGCGCCGTCACTCGGCCGACCGTTGTAC 4235739 36 100.0 36 .................................... GTCGAACACCACGTAGCAGCCCGGCCGCAGCATCGG 4235667 36 100.0 36 .................................... AAACTCGGGAAGATGCATCAGACGATGGTGCGGAAG 4235595 36 100.0 36 .................................... CAGATCACGATCGAGCTGCGTTCACCCAGCCAGCGC 4235523 36 100.0 37 .................................... GTCCATCGCGGCGGGGGGTACGACCCCCGCGTCCCGA 4235450 36 100.0 36 .................................... AAAAGGTACGCACTATCGGCCACCCTGGGCATCGCC 4235378 36 100.0 35 .................................... GCTATCCCTGGTGCACCCGGTGTAGGTGTTCCCGG 4235307 36 97.2 35 ...................................T TCCAGTACAGCGATGAATGCGCGGTCGTCAACCTC 4235236 36 100.0 36 .................................... CGGCGATGGTGAGCTGTCCGCGCTCGTCGACAACGC 4235164 36 100.0 37 .................................... AGGCATCCGCCTCTACCGCGTCCCCCAGGGCACGCGG 4235091 36 100.0 36 .................................... CGGCGTGGCGATCTGACACCCCACTCGACGCCCCGC 4235019 36 100.0 36 .................................... TTGGATACGCCCGGGTAACGGACAGCAATCCTTGCT 4234947 36 100.0 35 .................................... ATAGTCACTTACCAGAAGGATCGCGGCAAGCAATG 4234876 36 100.0 36 .................................... GGTGTTCTTCCCGCGGGGCCGACTCGGCCGCTTAGC 4234804 36 100.0 37 .................................... CGGCGCAGGGAGCGGAACGACTCGAAAAGTCGCTGAG 4234731 36 100.0 37 .................................... CATAAGGTTGGTTGCACGACCCCTAGCGCCTGTACAA 4234658 36 100.0 35 .................................... CGGACATCTCCCAACACCTCTCGGGCGGTCTTCCG 4234587 36 100.0 37 .................................... CAGGACGGAGACAGCGGGCCCCATCGCTGTTCCGCGT 4234514 36 100.0 36 .................................... ATGGGACTATCTACTTAGGAGGCGCTGGCGACATCG 4234442 36 100.0 35 .................................... GACCGTAGCGGGACGGACATGACGGCGGTGCGGTG 4234371 36 100.0 37 .................................... GGGTGGGGCGCCGGTGCGTTGTGCGCCGTCGAGGGCG 4234298 36 100.0 36 .................................... CTTCATCTGCCACGAGACCGGGTTCAGTCGGCGCCG 4234226 36 100.0 35 .................................... AAGTCGGCGGCCTTGTCGGTAGCGAAGAATTCCGC 4234155 36 100.0 36 .................................... AGCGTCATGAGTGAGCCGCAGCGCGCTCGCAAGCTC 4234083 36 100.0 36 .................................... TCAGATAGCGGAGTCGTCTCGGATCAGTCGAAGAAC 4234011 36 100.0 36 .................................... GAGATCAGGGAGAGCTGGCCGCGGCGCTCGTTGCCC 4233939 36 100.0 36 .................................... GTTATATCAGCCATCACATATCCTCCACATTCAAAT 4233867 36 100.0 36 .................................... GTGTTGTTGGCGTCTCGCCACATCAGCTCTTGCCGG 4233795 36 100.0 35 .................................... GGGTTGGCGTCGTACCTGCACAATCGTCGTGTCTG 4233724 36 100.0 36 .................................... CTTGGTCATATTGGTCTGTTCATTCGCGGTGACCGG 4233652 36 100.0 37 .................................... GTTTGGTTTAGGCGATGGTAATGGTGGGTTAGTTGTC 4233579 36 100.0 38 .................................... TACGACGAGCTGATGGGCACCGCATGATAACTAAAGAG 4233505 36 100.0 35 .................................... GCTTCCACAGCCGAGGAAGTCGCGATGACGAATGA 4233434 36 100.0 36 .................................... ACCGAAATGCGCGGGTGAGGCGTCGTCCGCGGTCTT 4233362 36 100.0 35 .................................... GAATACCATAAAGATTTGTCTGCAGCACATGCTAA 4233291 36 100.0 36 .................................... ACCAACCGCAACGCCGAAGACATGTACAAGGAATGC 4233219 36 100.0 36 .................................... GTGGAGATCAGCTCCTATCCGTGGCAACGCCGGGTT 4233147 36 100.0 38 .................................... GTGAAGCTCGGCATCGGTATTGCGCCGGGCTGGCAGAG 4233073 36 100.0 36 .................................... GCCGAACGCATGATGATCGCTATACCCAAGGCGATC 4233001 36 100.0 36 .................................... GAAACCCCGAACGTCATCAGGGCTTACCAGGTGCAC 4232929 36 100.0 39 .................................... CAGCTTGTACGGCTACATCGACGCAGCACTTGAGGGCTG 4232854 36 100.0 35 .................................... CTTATGGTGGTCGTGATGGATTGCGGCGCAAACAT 4232783 36 100.0 38 .................................... GGCTTCAATCCGCCAAAGCAGTATTCGGCCACCTACAC 4232709 36 100.0 36 .................................... GGACACGTTGCCGCTGTCAACGACGGAACCCATCGC 4232637 36 100.0 38 .................................... AGAAACCTGCGCCGCGCCATCGACACCTCCGTATACGC 4232563 36 100.0 35 .................................... AGGATCATTTCGGGCTTGCCGGTGTCATTGACCGG 4232492 36 100.0 38 .................................... CTGGCAGGGCCGCTGAGCAGACTCCTGGGCGGTCTCCT 4232418 36 100.0 37 .................................... AAGTTCGCCAACGCCCCATTTGGTCTCTCCCGTCATC 4232345 36 100.0 37 .................................... ATCGTGCTCCTGGTGCAGGGGTTCTTGACGGCGGGTC 4232272 36 100.0 35 .................................... CCGCAGTGAGCGCACTGACGCGCGGCCATCAGTGT 4232201 36 100.0 35 .................................... AGGAGCGATCTTCACGGATCACTTGGCCTGAACCT 4232130 36 100.0 36 .................................... GTCGCGAGTCTGGTACCCCTGGGGGGTTTGATTTTT 4232058 36 100.0 35 .................................... AGGATCGCGGCGTTACGGGTGTCCGCCTTGGCCAT 4231987 36 100.0 36 .................................... ATTTCTGCGCGTCGGGTCGCGCACCAGCGCAGGATC 4231915 36 97.2 36 ....................T............... AATATGCCGATTAAGATGACCAAGCACCTCCCGATC 4231843 36 100.0 35 .................................... ATCTGTATCGATGAGCCCATACGTGGACGGTGGAG 4231772 36 100.0 37 .................................... AACATCGGTGTGCGCCATGGCGGGCCGGGCGGTGGGC 4231699 36 100.0 35 .................................... AATCACTGCGGTCGTCTTCAACGACGGCGGCTTTA 4231628 36 100.0 36 .................................... ATGGACTCGATGCGCACCGGCATTGATTTCCAACGC 4231556 36 100.0 33 .................................... CTGATGTCGCTGACAGGGTGCATGTGGTTGCAC 4231487 36 100.0 35 .................................... TAAAAACGAATTTACTACAATTTCTGCCGGTCCCT 4231416 36 100.0 37 .................................... AATAACATGCAATGCCCAGTTTGTGTTGCCGTGCCAA 4231343 36 100.0 36 .................................... AATCAACCCGGCTAAAGCCAGTACGTCGGGGTGATG 4231271 36 100.0 37 .................................... CGATTTTCCGACCTGCAGTGCTACCCTTGGAAACCAT 4231198 36 100.0 36 .................................... TTCCCTACTCCTGTGGCGTTCCAGTAATGAGTGCGA 4231126 36 100.0 37 .................................... AAGGGGCCGCTGGGGCCATCGGATCTATCGCCGCCAT 4231053 36 100.0 37 .................................... CGGAGTTATGGGCGGAGCGGACGCAACGGCGGCCCGT 4230980 36 100.0 35 .................................... TTAATCATAATCATGATTAATTCTATTTGGTATCT 4230909 35 97.2 36 .................-.................. GTACACCCCGAAATTGGATTGCACGTTGAATCGCAC 4230838 36 100.0 37 .................................... AACACCACCGGTGCGGATGCCCGCCAGGACTCCGAGA 4230765 36 100.0 36 .................................... CTGCTCACGCACGCCAAAGGCCGCGCACACGACGAA 4230693 36 100.0 35 .................................... CCAAATTGGAAATTGGTAAGATCGTCGACACCCTG 4230622 36 100.0 36 .................................... ACGTGAAGGCGGGGAGGCGGACGCGGACGTTGTGAT 4230550 36 100.0 36 .................................... AGCGATCTCGTGCTGCGTCCTCCCCAGTGAGGCGGC 4230478 36 100.0 37 .................................... TCGAAGAACCATTTTGCAACCTGTTCACGGGTGAATC 4230405 36 100.0 36 .................................... ACAGCGGGTACACCGTATCCACTTCATTGAGGGTTC 4230333 36 100.0 37 .................................... GGATTCGTTGCCGCGCATGGCCAACGCACTGAAGAGT 4230260 36 100.0 34 .................................... AGAATGTGGCAGGCTGGTCGGAGCGCGTTGGCAA 4230190 36 97.2 35 ..................C................. CGCCGTCCGTTCCGCCGTCGATTCCGCCGTCCGTT 4230119 36 100.0 38 .................................... CGCGACACCTGCACCTGCCCGGACCCCTGGTGTCCCGT 4230045 36 100.0 38 .................................... GGATTCGACGCCGGCAGTGGCCGGCCGGGTGCGGCGAT 4229971 36 100.0 35 .................................... TTCGTTGGGGATGTCGATGATGATGTCGTCACCGT 4229900 36 100.0 38 .................................... GAGCGGCCCGCCGCGCTCTACCGGTACCTGATCAGCAA 4229826 36 100.0 36 .................................... ATGTTTGCCGTCGACGGTGTCGCTGTTGCGGCAGTC 4229754 36 100.0 35 .................................... GAGGAGCATGGTGGCGAGCTTTTGCTGGGCGGCGT 4229683 36 97.2 37 .........................G.......... CAGTCGCCCGGACAGTTTCACTTCGCCGCGCAGCAGC 4229610 35 91.7 35 ...................T.........C-..... TCGCTGGTGTGGATGTACAAGTGACGGTTGTCAGC 4229540 36 83.3 0 .........A.....A...TG...........TC.. | ========== ====== ====== ====== ==================================== ======================================= ================== 110 36 99.6 36 GTTATTCCGGTCATTTTGGCCGGACACCATTGAGGC # Left flank : CTCGTCGGTGAGCTGCCTGAGTATGTCCCAATGGTGACGAGATGACGCGACGTCGGTACTTGCTGGCATACGACATCGCCGATCCCAAACGACTGCGACGAGTGTGCAACCTGATGGAGGACCACGGTGAGCGACTGCAATATTCGGTATTTCTATGCGACCTCAGCGTTGCGGAGCTATCGGAACTTGAAGCCGCCGTGACCGCTGTGATGCATCTCGTCCAAGACAGCGTCGTCCGAATCGACCTAGGCCCCACGTTTTCAGCAGCTACTATACGACAGATCGGTCGTCGCCGCTGCCTTCCTACGGACGGGCCGCAGATCGTATGAAGCTGCGAGCGGCCATATGAAGGGGCAGATCCGGGGCAGCGCTCGCGGCCTGGTGGGAGACGTTGCGGTAGACGCAGCACCTGACCGTCAAACGCGCCGCAGATGCTGGAACCTTCACCGCTCGCGGTGTCGTGTATTATGCCAGGTCACGGGGCTGTAATTGATCGAGCC # Right flank : ATTAGTTGGCGGTCGGGATCTTTACCAGACGAGATACATTATTCATGGCTGCCCGGGTCCGCAGCGCCGTCGGGTGATCCGACCGGTAACAACACCCGCGACTGTCCGAAATGCACCGCATGGGTTGCCGGCTTCACCTGCCGGCCGGTCCCGAGTTAGGACAATTTAGTGTGCATGGCCGCCATTGATCTTGGCGATGACGTCGCGGAGGTCATCGGGTAGCGGGTCGACAGCGGTCAGGATTTGCCTGCCTGCTTTGATCTGTACGGTTCGGAAGCGGCGTGCGGTTCGTACGAATTTCTTGATGCTCCAGCCGGTTTGGGTCTCGATGTAATGACTGACGGCCAGGGCGGCGAACACGATGGTCAGGTGAGCGTCGATGGATTCGCGCTTGTGGTGGTAGATGGGCCTGGCCTGCAGGTCGTGCTTGGACATCCGGAAGCTCTTCTCGATGCGCCAGAGCTGGTGGTAGGCGCCGATGACGAACTCCGGTTTCTGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCCGGTCATTTTGGCCGGACACCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //