Array 1 212324-210585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBA010000004.1 Salmonella enterica subsp. enterica serovar Derby strain YC19BS3 YZU2067_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212323 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 212262 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 212200 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 212139 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 212078 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 212017 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 211956 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 211895 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 211834 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 211773 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 211712 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 211651 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 211590 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 211529 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 211468 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 211407 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 211346 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 211285 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 211224 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 211163 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 211102 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 211041 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 210980 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 210919 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 210858 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 210797 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 210736 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 210675 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 210614 29 93.1 0 A...........T................ | A [210587] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229785-228964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBA010000004.1 Salmonella enterica subsp. enterica serovar Derby strain YC19BS3 YZU2067_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229784 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 229723 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 229662 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 229601 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 229540 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 229479 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 229418 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 229357 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 229296 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 229235 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 229174 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 229113 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 229052 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 228991 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //